Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011244.1

Orthogroup ID

OG0003640

Physical Location & Seq

Genomic Coordinates Forward (+)

6841 .. 8038

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011244.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgggtcgccggcagaacgagtccgacctcggccgttttgcacttctggcgcttctccttatgggtgcaatctcctgctgcatgctctacctgttcatctctatggtcttgaaacccaatagtgccacatttgctccaatttcagagctaggtgagaatggcggtgaggttgttttggcgggtaaagaagaaggcgagtgttgtagagggatcgagcatttggagctttggggtgatgctgtgaaatggggggctgagtttagatgcaattcttcgaaggagtgctgcatggcttgtaaggatatgtgtggggatccaaatgggccgtgtttgtgtgattcttgggtgttttgtggggatagagcggcttgcggagataagtttggtgagtgttggttaaaaaaacaaaaggatacattggagcctgatcggcgagactcaggggatctagttatgtggacttctggacatatatttgggaaaggagaggtaattcatgttccaggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4 Pro_isomerase

Protein Analysis

169

Amino Acids

18.48

Weight (kDa)

4.99

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17070
fragaria_vesca	FvH4_5g20480 FvH4_5g20480 FvH4_7g09211
malus_domestica	MD06G1046500.v1.1 MD07G1096900.v1.1 MD07G1097200.v1.1
prunus_persica	Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.5G054800_v2.0.a1
pyrus_communis	pycom06g03920 pycom07g08000
rosa_chinensis	RchiOBHm_Chr1g0345271 RchiOBHm_Chr7g0205801
rosa_laevigata	RLG00000003353 RLG00000028842
rosa_multiflora	Rmu_sc0000076.1_g000049 Rmu_sc0002329.1_g000010 Rmu_sc0008518.1_g000009 Rmu_sc0011244.1_g000002
rosa_roxburghii	Rroxscaffold_3G00251970 Rroxscaffold_4G00309140
rosa_rugosa	Rorug01G0177100 Rorug07G0093200
rosa_samantha	Rh1AG195200 Rh1BG161300 Rh1CG179600 Rh1DG191700 Rh7AG224700 Rh7BG219900 Rh7CG238400 Rh7DG231400
rosa_wichuraiana	Rw1G016080 Rw7G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	365
AciI	CCGC	4 cut(s)	162, 179, 365, 372
AclWI	GGATC	4 cut(s)	218, 308, 321, 453
AcoI	YGGCCR	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	2 cut(s)	148, 226
AluI	AGCT	2 cut(s)	148, 226
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	4 cut(s)	218, 308, 321, 453
AoxI	GGCC	2 cut(s)	31, 323
ApeKI	GCWGC	2 cut(s)	78, 285
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	4 cut(s)	164, 176, 245, 398
AsuII	TTCGAA	1 cut(s)	275
BamHI	GGATCC	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	65, 272
BceAI	ACGGC	2 cut(s)	18, 310
BciT130I	CCWGG	1 cut(s)	504
BciVI	GTATCC	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	3 cut(s)	149, 449, 508
BfoI	RGCGCY	1 cut(s)	53
BfuI	GTATCC	1 cut(s)	406
BglI	GCCNNNNNGGC	1 cut(s)	430
BisI	GCNGC	3 cut(s)	79, 286, 366
BlsI	GCNGC	3 cut(s)	80, 287, 367
Bme1390I	CCNGG	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	315, 423
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	2 cut(s)	226, 254
Bpu14I	TTCGAA	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bse118I	RCCGGY	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	246, 453
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	65, 272
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	33, 325
BsiEI	CGRYCG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	10
BsmAI	GTCTC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	33, 325
Bsp119I	TTCGAA	1 cut(s)	275
Bsp143I	GATC	4 cut(s)	210, 313, 427, 445
BspACI	CCGC	4 cut(s)	162, 179, 365, 372
BspANI	GGCC	2 cut(s)	33, 325
BspCNI	CTCAG	2 cut(s)	247, 452
BspLI	GGNNCC	2 cut(s)	315, 423
BspPI	GGATC	4 cut(s)	218, 308, 321, 453
BspT104I	TTCGAA	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	4 cut(s)	210, 313, 427, 445
Bst2UI	CCWGG	1 cut(s)	504
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	11, 83, 370
BstDEI	CTNAG	2 cut(s)	255, 439
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	4 cut(s)	213, 316, 430, 448
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	4 cut(s)	210, 313, 427, 445
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 131, 223, 430
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	502
BstV1I	GCAGC	2 cut(s)	65, 272
BstX2I	RGATCY	2 cut(s)	313, 445
BstYI	RGATCY	2 cut(s)	313, 445
BstZI	CGGCCG	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	33, 325
Cac8I	GCNNGC	3 cut(s)	11, 83, 370
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	323
CviAII	CATG	3 cut(s)	82, 289, 497
CviJI	RGCY	9 cut(s)	33, 148, 226, 254, 293, 325, 368, 424, 507
CviKI_1	RGCY	9 cut(s)	33, 148, 226, 254, 293, 325, 368, 424, 507
DdeI	CTNAG	2 cut(s)	255, 439
DpnI	GATC	4 cut(s)	212, 315, 429, 447
DpnII	GATC	4 cut(s)	210, 313, 427, 445
EaeI	YGGCCR	1 cut(s)	31
EagI	CGGCCG	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	31
Eco52I	CGGCCG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	502
FaeI	CATG	3 cut(s)	85, 292, 500
FaiI	YATR	9 cut(s)	62, 83, 104, 290, 305, 455, 471, 473, 498
FatI	CATG	3 cut(s)	81, 288, 496
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	79, 286, 366
Fsp4HI	GCNGC	3 cut(s)	79, 286, 366
FspBI	CTAG	3 cut(s)	149, 449, 508
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	3 cut(s)	79, 286, 366
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	33, 325
HapII	CCGG	1 cut(s)	10
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	3 cut(s)	85, 292, 500
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	3 cut(s)	20, 338, 437
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	4 cut(s)	164, 176, 245, 398
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	2 cut(s)	25, 145
Hpy188III	TCNNGA	2 cut(s)	109, 465
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	2 cut(s)	185, 271
HpyCH4V	TGCA	5 cut(s)	41, 68, 81, 267, 288
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 131, 223, 430
HpyF3I	CTNAG	2 cut(s)	255, 439
Hsp92II	CATG	3 cut(s)	85, 292, 500
HspAI	GCGC	1 cut(s)	50
KroI	GCCGGC	1 cut(s)	9
KroNI	GCCGGC	1 cut(s)	11
Kzo9I	GATC	4 cut(s)	210, 313, 427, 445
LmnI	GCTCC	3 cut(s)	139, 223, 421
LpnPI	CCDG	8 cut(s)	23, 32, 88, 104, 426, 438, 450, 489
Lsp1109I	GCAGC	2 cut(s)	65, 272
LweI	GCATC	2 cut(s)	226, 254
MaeI	CTAG	3 cut(s)	149, 449, 508
MalI	GATC	4 cut(s)	212, 315, 429, 447
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	4 cut(s)	210, 313, 427, 445
MboII	GAAGA	2 cut(s)	200, 264
MflI	RGATCY	2 cut(s)	313, 445
MluCI	AATT	3 cut(s)	138, 268, 492
MlyI	GAGTC	2 cut(s)	29, 431
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	4 cut(s)	38, 160, 200, 481
MroNI	GCCGGC	1 cut(s)	9
MseI	TTAA	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	4 cut(s)	47, 131, 223, 430
NaeI	GCCGGC	1 cut(s)	11
NdeII	GATC	4 cut(s)	210, 313, 427, 445
NgoMIV	GCCGGC	1 cut(s)	9
NlaIII	CATG	3 cut(s)	85, 292, 500
NlaIV	GGNNCC	2 cut(s)	315, 423
NmeAIII	GCCGAG	1 cut(s)	9
NspI	RCATGY	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	85
PdiI	GCCGGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	3 cut(s)	80, 287, 367
PleI	GAGTC	2 cut(s)	28, 431
PpsI	GAGTC	2 cut(s)	28, 431
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	2 cut(s)	315, 423
PspPI	GGNCC	1 cut(s)	323
PsrI	GAACNNNNNNTAC	1 cut(s)	483
PsuI	RGATCY	2 cut(s)	313, 445
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	3 cut(s)	79, 286, 366
Sau3AI	GATC	4 cut(s)	210, 313, 427, 445
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	2 cut(s)	29, 431
ScrFI	CCNGG	1 cut(s)	504
SetI	ASST	7 cut(s)	30, 93, 150, 154, 171, 228, 492
SfaNI	GCATC	2 cut(s)	226, 254
SfuI	TTCGAA	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	101
SphI	GCATGC	1 cut(s)	85
Sse9I	AATT	3 cut(s)	138, 268, 492
SsiI	CCGC	4 cut(s)	162, 179, 365, 372
SspMI	CTAG	3 cut(s)	149, 449, 508
StyD4I	CCNGG	1 cut(s)	502
TaqI	TCGA	2 cut(s)	213, 275
TasI	AATT	3 cut(s)	138, 268, 492
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TseI	GCWGC	2 cut(s)	78, 285
TspDTI	ATGAA	2 cut(s)	85, 485
XceI	RCATGY	1 cut(s)	85
XspI	CTAG	3 cut(s)	149, 449, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.