MD07G1096900.v1.1

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0003640
Physical Location & Seq
Forward (+)
10657686 .. 10660600
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1096900.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGGGTCGTCGTCGGCAGAGCGACTCAGAACTCGGCCGTCTCACACTTCTGGCCCTTTTCCTGATGGGCGCAATCTTCTGCTGCATGGTGTACCTGTTCCTCGCTGTGGCCTCAAAACCCAGCAGCATAACAACAGCTGATTCGGTTTCGGAATTCGGAGACGTTGGATGGAGGAGTGGAGAAGAAGATGGAGAATGCTGCAGAGGGATTGAGAATTTAGAGCTCTGGGGTGATGCTGTGAAATGGGGTTCTGAGTTTAAGGTGAATTCTTCTAAAGAGTGCTGCATGTCTTGTAAGGATATGTGCGGGGATCGAGATGGGCATTGTTTGTGTGACAGTTGGGTGTTTTGTGGGGATAGAGAGGCTTGTGGACTTAGATATGGTGAGGGTATGGGGAATTACACTAGAGCGTGTAGCCAACTTGGTTACGCCCATTGTTGGTTAAAGAAACAAAAGGATACCTTGGACCCTGATCGGAAAGACTCAGGTGATCTGATTGCATGGACTTCTGGACTCGTCTTTGGAAAAGGAGAGGGTATTGTCGGCTTGGAAACAGAGTATGGGACTCTTCATATAAAGGTTAATTCTTCCTCCTCAGGAGTAGATGCCATCTACTCTCGTTCGGTTCTTAAATTTATGCAGCTCCGTCCTGATTGTGCCCCACATTCTGTTGCCTACATTCTTGAGCTGTTGCAAGTGCCCCGTTATGCAGGCTGCCAATTTTATCGCGCAGAAAACCGGGGAAGCTTTTGGGACTCACTAGGAAACCATGTAAAAAATGCTCCGTTTGGCCCGCCTTTCGCGCTAATACAAGGAACGCTTGCAGCTCACGGGTTCGTATTTAAGGAGATTCCGGCAGAGGTGTCTGGCACCATCAGAAGAGGATCGGTTGCCTGGATTGGTTCCGGTCCAGAATTCTTCATCAGCCTAGCCAACCATTTTGAGTGGAAAAAAGCTTACACTGTGTTTGGTTCCGTTCTTCCTGAAGACATGGAAATCGCCGAGAAAATTGCCCAGCTTCCGACCAAACAAGAGGTCTGGAGTAACATCAATGTCTCCGTCTTGGAGAGTCCTGTCGCTTTATGGTTCCGAAGAATCAAGCCGGAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4 Pro_isomerase

Protein Analysis

371

Amino Acids

40.97

Weight (kDa)

5.74

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 214 - 355 9.6e-10 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 869
AccII CGCG 2 cut(s) 729, 803
AciI CCGC 2 cut(s) 306, 794
AclWI GGATC 2 cut(s) 318, 892
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 5 cut(s) 152, 214, 265, 632, 914
AcuI CTGAAG 1 cut(s) 1005
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 106, 438
AjnI CCWGG 1 cut(s) 893
AluBI AGCT 8 cut(s) 137, 223, 643, 688, 747, 827, 956, 1018
AluI AGCT 8 cut(s) 137, 223, 643, 688, 747, 827, 956, 1018
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 3 cut(s) 44, 153, 1060
AlwI GGATC 2 cut(s) 318, 892
AoxI GGCC 4 cut(s) 34, 51, 108, 790
ApeKI GCWGC 7 cut(s) 81, 123, 198, 282, 640, 714, 824
ApoI RAATTY 5 cut(s) 152, 214, 265, 632, 914
ArsI GACNNNNNNTTYG 2 cut(s) 1020, 1052
AspLEI GCGC 3 cut(s) 71, 731, 805
AspS9I GGNCC 4 cut(s) 52, 466, 791, 908
AsuC2I CCSGG 1 cut(s) 740
AsuHPI GGTGA 4 cut(s) 242, 274, 395, 500
AvaII GGWCC 2 cut(s) 466, 908
AxyI CCTNAGG 1 cut(s) 595
BaeGI GKGCMC 2 cut(s) 661, 702
BanI GGYRCC 1 cut(s) 869
BanII GRGCYC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 993
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 7 cut(s) 68, 135, 185, 269, 652, 701, 836
BccI CCATC 6 cut(s) 58, 162, 182, 311, 617, 881
BceAI ACGGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 992, 1026
BciT130I CCWGG 1 cut(s) 895
BciVI GTATCC 1 cut(s) 451
BcnI CCSGG 1 cut(s) 740
BcoDI GTCTC 3 cut(s) 44, 153, 1060
BfaI CTAG 3 cut(s) 405, 761, 929
BfmI CTRYAG 1 cut(s) 199
BfuI GTATCC 1 cut(s) 451
BisI GCNGC 7 cut(s) 82, 124, 199, 283, 641, 715, 825
BlsI GCNGC 7 cut(s) 83, 125, 200, 284, 642, 716, 826
Bme1390I CCNGG 2 cut(s) 740, 895
Bme18I GGWCC 2 cut(s) 466, 908
BmgT120I GGNCC 4 cut(s) 52, 466, 791, 908
BmiI GGNNCC 5 cut(s) 468, 871, 904, 973, 1088
BmrFI CCNGG 2 cut(s) 740, 895
BmsI GCATC 2 cut(s) 223, 595
BpiI GAAGAC 1 cut(s) 993
BpmI CTGGAG 1 cut(s) 1060
BpuEI CTTGAG 1 cut(s) 704
BpuMI CCSGG 1 cut(s) 740
BsaJI CCNNGG 2 cut(s) 462, 739
BsaWI WCCGGW 1 cut(s) 905
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 438
Bse21I CCTNAGG 1 cut(s) 595
BseBI CCWGG 1 cut(s) 895
BseDI CCNNGG 2 cut(s) 462, 739
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 2 cut(s) 106, 438
BseMII CTCAG 4 cut(s) 39, 243, 498, 609
BseRI GAGGAG 2 cut(s) 187, 583
BseSI GKGCMC 2 cut(s) 661, 702
BseX3I CGGCCG 1 cut(s) 34
BseXI GCAGC 7 cut(s) 68, 135, 185, 269, 652, 701, 836
BseYI CCCAGC 2 cut(s) 119, 1014
Bsh1236I CGCG 2 cut(s) 729, 803
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 4 cut(s) 36, 53, 110, 792
BshNI GGYRCC 1 cut(s) 869
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 4 cut(s) 739, 854, 906, 1103
BslFI GGGAC 2 cut(s) 577, 767
BslI CCNNNNNNNGG 2 cut(s) 106, 438
BsmAI GTCTC 3 cut(s) 44, 153, 1060
BsmBI CGTCTC 2 cut(s) 44, 153
BsmFI GGGAC 2 cut(s) 577, 767
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 4 cut(s) 36, 53, 110, 792
Bsp1286I GDGCHC 3 cut(s) 225, 661, 702
Bsp143I GATC 4 cut(s) 310, 472, 490, 884
BspACI CCGC 2 cut(s) 306, 794
BspANI GGCC 4 cut(s) 36, 53, 110, 792
BspCNI CTCAG 4 cut(s) 38, 244, 497, 608
BspFNI CGCG 2 cut(s) 729, 803
BspHI TCATGA 1 cut(s) 1109
BspLI GGNNCC 5 cut(s) 468, 871, 904, 973, 1088
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 2 cut(s) 318, 892
BspT107I GGYRCC 1 cut(s) 869
BssECI CCNNGG 2 cut(s) 462, 739
BssMI GATC 4 cut(s) 310, 472, 490, 884
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 895
Bst4CI ACNGT 2 cut(s) 338, 964
Bst6I CTCTTC 2 cut(s) 573, 874
BstC8I GCNNGC 3 cut(s) 712, 794, 822
BstDEI CTNAG 5 cut(s) 25, 252, 374, 484, 595
BstF5I GGATG 1 cut(s) 173
BstFNI CGCG 2 cut(s) 729, 803
BstHHI GCGC 3 cut(s) 71, 731, 805
BstKTI GATC 4 cut(s) 313, 475, 493, 887
BstMAI GTCTC 3 cut(s) 44, 153, 1060
BstMBI GATC 4 cut(s) 310, 472, 490, 884
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 802
BstNI CCWGG 1 cut(s) 895
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 2 cut(s) 738, 893
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 2 cut(s) 661, 702
BstUI CGCG 2 cut(s) 729, 803
BstV1I GCAGC 7 cut(s) 68, 135, 185, 269, 652, 701, 836
BstV2I GAAGAC 1 cut(s) 993
BstZI CGGCCG 1 cut(s) 34
Bsu36I CCTNAGG 1 cut(s) 595
BsuI GTATCC 1 cut(s) 451
BsuRI GGCC 4 cut(s) 36, 53, 110, 792
BtsCI GGATG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 960
Cac8I GCNNGC 3 cut(s) 712, 794, 822
CciI TCATGA 1 cut(s) 1109
CfoI GCGC 3 cut(s) 71, 731, 805
Cfr13I GGNCC 4 cut(s) 52, 466, 791, 908
Csp6I GTAC 1 cut(s) 91
CviAII CATG 6 cut(s) 85, 286, 501, 770, 991, 1110
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 5 cut(s) 25, 252, 374, 484, 595
DpnI GATC 4 cut(s) 312, 474, 492, 886
DpnII GATC 4 cut(s) 310, 472, 490, 884
EaeI YGGCCR 1 cut(s) 34
EagI CGGCCG 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 573, 874
EarI CTCTTC 2 cut(s) 573, 874
Ecl136II GAGCTC 1 cut(s) 223
EclXI CGGCCG 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 466, 908
Eco52I CGGCCG 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 1005
Eco81I CCTNAGG 1 cut(s) 595
EcoICRI GAGCTC 1 cut(s) 223
EcoRI GAATTC 3 cut(s) 152, 265, 914
EcoRII CCWGG 1 cut(s) 893
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 462
Esp3I CGTCTC 2 cut(s) 44, 153
FaeI CATG 6 cut(s) 88, 289, 504, 773, 994, 1113
FalI AAGNNNNNCTT 4 cut(s) 446, 478, 804, 836
FaqI GGGAC 2 cut(s) 577, 767
FatI CATG 6 cut(s) 84, 285, 500, 769, 990, 1109
FauI CCCGC 2 cut(s) 299, 801
Fnu4HI GCNGC 7 cut(s) 82, 124, 199, 283, 641, 715, 825
FokI GGATG 1 cut(s) 180
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 7 cut(s) 82, 124, 199, 283, 641, 715, 825
FspBI CTAG 3 cut(s) 405, 761, 929
GlaI GCGC 3 cut(s) 70, 730, 804
GluI GCNGC 7 cut(s) 82, 124, 199, 283, 641, 715, 825
GsaI CCCAGC 2 cut(s) 123, 1018
GsuI CTGGAG 1 cut(s) 1060
HaeIII GGCC 4 cut(s) 36, 53, 110, 792
HapII CCGG 4 cut(s) 739, 854, 906, 1103
HhaI GCGC 3 cut(s) 71, 731, 805
Hin1II CATG 6 cut(s) 88, 289, 504, 773, 994, 1113
Hin6I GCGC 3 cut(s) 69, 729, 803
HinP1I GCGC 3 cut(s) 69, 729, 803
HindIII AAGCTT 2 cut(s) 745, 954
HpaII CCGG 4 cut(s) 739, 854, 906, 1103
HphI GGTGA 4 cut(s) 242, 274, 395, 500
Hpy166II GTNNAC 2 cut(s) 91, 371
Hpy188I TCNGA 9 cut(s) 28, 151, 158, 253, 477, 495, 878, 1023, 1091
Hpy8I GTNNAC 2 cut(s) 91, 371
Hpy99I CGWCG 2 cut(s) 12, 15
HpyCH4III ACNGT 2 cut(s) 338, 964
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 8 cut(s) 84, 201, 285, 500, 640, 694, 710, 824
HpyF10VI GCNNNNNNNGC 1 cut(s) 802
HpyF3I CTNAG 5 cut(s) 25, 252, 374, 484, 595
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 6 cut(s) 88, 289, 504, 773, 994, 1113
HspAI GCGC 3 cut(s) 69, 729, 803
Kzo9I GATC 4 cut(s) 310, 472, 490, 884
LmnI GCTCC 2 cut(s) 648, 787
Lsp1109I GCAGC 7 cut(s) 68, 135, 185, 269, 652, 701, 836
LweI GCATC 2 cut(s) 223, 595
MaeI CTAG 3 cut(s) 405, 761, 929
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 3 cut(s) 332, 425, 1043
MalI GATC 4 cut(s) 312, 474, 492, 886
MboI GATC 4 cut(s) 310, 472, 490, 884
MhlI GDGCHC 3 cut(s) 225, 661, 702
MluCI AATT 9 cut(s) 152, 214, 265, 397, 583, 632, 719, 914, 1008
MlyI GAGTC 6 cut(s) 17, 476, 507, 559, 749, 1078
MmeI TCCRAC 2 cut(s) 145, 1046
MseI TTAA 5 cut(s) 258, 443, 582, 630, 843
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 4 cut(s) 739, 854, 906, 1103
MspR9I CCNGG 2 cut(s) 740, 895
Mva1269I GAATGC 1 cut(s) 200
MvaI CCWGG 1 cut(s) 895
MvnI CGCG 2 cut(s) 729, 803
MwoI GCNNNNNNNGC 1 cut(s) 802
NciI CCSGG 1 cut(s) 740
NdeII GATC 4 cut(s) 310, 472, 490, 884
NlaIII CATG 6 cut(s) 88, 289, 504, 773, 994, 1113
NlaIV GGNNCC 5 cut(s) 468, 871, 904, 973, 1088
NmeAIII GCCGAG 2 cut(s) 12, 1027
NmuCI GTSAC 1 cut(s) 332
NspI RCATGY 1 cut(s) 289
PagI TCATGA 1 cut(s) 1109
PctI GAATGC 1 cut(s) 200
PfeI GAWTC 4 cut(s) 140, 850, 1095, 1106
PkrI GCNGC 7 cut(s) 83, 125, 200, 284, 642, 716, 826
PleI GAGTC 6 cut(s) 17, 476, 507, 559, 749, 1077
PpsI GAGTC 6 cut(s) 17, 476, 507, 559, 749, 1077
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 893
PspFI CCCAGC 2 cut(s) 119, 1014
PspGI CCWGG 1 cut(s) 893
PspN4I GGNNCC 5 cut(s) 468, 871, 904, 973, 1088
PspPI GGNCC 4 cut(s) 52, 466, 791, 908
PstI CTGCAG 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SacI GAGCTC 1 cut(s) 225
SaqAI TTAA 5 cut(s) 258, 443, 582, 630, 843
SatI GCNGC 7 cut(s) 82, 124, 199, 283, 641, 715, 825
Sau3AI GATC 4 cut(s) 310, 472, 490, 884
Sau96I GGNCC 4 cut(s) 52, 466, 791, 908
SchI GAGTC 6 cut(s) 17, 476, 507, 559, 749, 1078
ScrFI CCNGG 2 cut(s) 740, 895
SduI GDGCHC 3 cut(s) 225, 661, 702
SfaNI GCATC 2 cut(s) 223, 595
SfcI CTRYAG 1 cut(s) 199
SinI GGWCC 2 cut(s) 466, 908
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 9 cut(s) 152, 214, 265, 397, 583, 632, 719, 914, 1008
SsiI CCGC 2 cut(s) 306, 794
SspMI CTAG 3 cut(s) 405, 761, 929
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 738, 893
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 2 cut(s) 338, 964
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 313
TasI AATT 9 cut(s) 152, 214, 265, 397, 583, 632, 719, 914, 1008
TfiI GAWTC 4 cut(s) 140, 850, 1095, 1106
Tru1I TTAA 5 cut(s) 258, 443, 582, 630, 843
Tru9I TTAA 5 cut(s) 258, 443, 582, 630, 843
TscAI CASTG 1 cut(s) 967
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 7 cut(s) 81, 123, 198, 282, 640, 714, 824
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 560, 910
TspGWI ACGGA 4 cut(s) 635, 774, 964, 1048
TspRI CASTG 1 cut(s) 967
VpaK11BI GGWCC 2 cut(s) 466, 908
XapI RAATTY 5 cut(s) 152, 214, 265, 632, 914
XceI RCATGY 1 cut(s) 289
XspI CTAG 3 cut(s) 405, 761, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.