Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003640

Physical Location & Seq

Genomic Coordinates Forward (+)

17841528 .. 17845026

Gene Structure 3499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G121100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGTCGCAGGCAGAGCGACTCAGAACTCGGCCGGTTTGCACTTCTGGCCCTTTTCTTGATGGGTGCAATCTTCTGTTGCATGGTGTATCTTTTCCTGTCTATCGTCTCAAACCCCAATAGCATAACTGTTGATTCGGTTTCAGAGTTGGGTGAGAATGGCCGTGAAGTTGCATTGGGGAGTGAAGAAGAAGATGAAGAAGATGGAGAATGTTGTGGAGGGATTGAGCATTTGGAGCTTTGGGGTGATGCTGTGAGATGGGGTTCTCAGTTTAAGGTCAATTCTTCTGAAGAATGCTGCGTGGCTTGTAAAGCTATGTGTGGAGATCAAGGTGGGCCTTGTTTGTGTGATAGTTGGGTGTTTTGTGGGAACAGAGTGGCTTGTGGACTTAGATTTGGTGAGTGTTGGTTAAAGAAACAAAAGGATACCTTGGAGCCTGATCGGAAAGACTCAGGTGATCTAGTTATGTGGACTTCTGGATTCATCTTTGGAGAAAGAGAGGGTATTGTTGGTTTGGAAACAGAATATGGTGTTCTTCGCATAAAGCTGTTTCCTGATTGTGCCCCACATTCTGTTGCCTATATTCTTGAGATGTTGCAAGTACCTCATTATGCAGGTTGCCACTTTTATCGTGCAGAAGACCGTGGAAGTTTTTGGGACTCACTAGGAAACCATGTAGAAAATGCTCCATTTGGGCCGCCTTTCGCATTAATACAAGGAACACTTGAAGCGCATGGGATCATATTTAAGAACATTCCAACAGAGGTCTCTCATGCTGTCAGAAGAGGATCAGTTGCCTGGATTGATTCCGGCCCGGAATTCTTCATCAGCCTTGCGAACCATTTTGAGTGGAAAAAAGTGTACACCGTGTTCGGTTCTGTTCTTCCGGAAGACATGGAAATTGCGGAGAAAATTGCCCAGCTTCCATCCAAACAGGAGGTCTGGAGTAGCATTAATGTCTCTGTCTTGGAGAGACCCGTTGATTTATGGGTCCGAAGAATCAAGTCGAACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4 Pro_isomerase

Protein Analysis

339

Amino Acids

37.66

Weight (kDa)

4.85

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17070
fragaria_vesca	FvH4_5g20480 FvH4_5g20480 FvH4_7g09211
malus_domestica	MD06G1046500.v1.1 MD07G1096900.v1.1 MD07G1097200.v1.1
prunus_persica	Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.5G054800_v2.0.a1
pyrus_communis	pycom06g03920 pycom07g08000
rosa_chinensis	RchiOBHm_Chr1g0345271 RchiOBHm_Chr7g0205801
rosa_laevigata	RLG00000003353 RLG00000028842
rosa_multiflora	Rmu_sc0000076.1_g000049 Rmu_sc0002329.1_g000010 Rmu_sc0008518.1_g000009 Rmu_sc0011244.1_g000002
rosa_roxburghii	Rroxscaffold_3G00251970 Rroxscaffold_4G00309140
rosa_rugosa	Rorug01G0177100 Rorug07G0093200
rosa_samantha	Rh1AG195200 Rh1BG161300 Rh1CG179600 Rh1DG191700 Rh7AG224700 Rh7BG219900 Rh7CG238400 Rh7DG231400
rosa_wichuraiana	Rw1G016080 Rw7G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	605
AccIII	TCCGGA	1 cut(s)	886
AciI	CCGC	2 cut(s)	698, 905
AclWI	GGATC	2 cut(s)	746, 796
AcoI	YGGCCR	2 cut(s)	31, 160
AcsI	RAATTY	1 cut(s)	818
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	2 cut(s)	603, 863
AgsI	TTSAA	1 cut(s)	728
AjnI	CCWGG	1 cut(s)	797
AluBI	AGCT	4 cut(s)	238, 314, 547, 922
AluI	AGCT	4 cut(s)	238, 314, 547, 922
Alw26I	GTCTC	4 cut(s)	112, 772, 964, 967
AlwI	GGATC	2 cut(s)	746, 796
Aor13HI	TCCGGA	1 cut(s)	886
AoxI	GGCC	6 cut(s)	31, 48, 160, 335, 695, 811
ApeKI	GCWGC	1 cut(s)	297
ApoI	RAATTY	1 cut(s)	818
ArsI	GACNNNNNNTTYG	2 cut(s)	924, 956
AseI	ATTAAT	2 cut(s)	710, 954
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	5 cut(s)	49, 335, 695, 812, 991
AsuC2I	CCSGG	1 cut(s)	815
AsuHPI	GGTGA	4 cut(s)	164, 257, 410, 467
AvaII	GGWCC	1 cut(s)	991
BaeGI	GKGCMC	1 cut(s)	565
BbsI	GAAGAC	2 cut(s)	645, 897
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	4 cut(s)	55, 197, 252, 934
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	799
BciVI	GTATCC	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	815
BcoDI	GTCTC	4 cut(s)	112, 772, 964, 967
BfaI	CTAG	2 cut(s)	461, 665
BfuAI	ACCTGC	1 cut(s)	605
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	2 cut(s)	298, 698
BlsI	GCNGC	2 cut(s)	299, 699
Bme1390I	CCNGG	2 cut(s)	799, 815
Bme18I	GGWCC	1 cut(s)	991
BmgT120I	GGNCC	5 cut(s)	49, 335, 695, 812, 991
BmiI	GGNNCC	2 cut(s)	435, 992
BmrFI	CCNGG	2 cut(s)	799, 815
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	2 cut(s)	645, 897
BpmI	CTGGAG	1 cut(s)	964
BpuEI	CTTGAG	1 cut(s)	608
BpuMI	CCSGG	1 cut(s)	815
BsaI	GGTCTC	2 cut(s)	772, 967
BsaJI	CCNNGG	2 cut(s)	429, 643
BsaWI	WCCGGW	1 cut(s)	886
Bse118I	RCCGGY	1 cut(s)	33
BseAI	TCCGGA	1 cut(s)	886
BseBI	CCWGG	1 cut(s)	799
BseDI	CCNNGG	2 cut(s)	429, 643
BseGI	GGATG	1 cut(s)	926
BseMII	CTCAG	3 cut(s)	36, 281, 465
BseSI	GKGCMC	1 cut(s)	565
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	284
BseYI	CCCAGC	1 cut(s)	918
BsgI	GTGCAG	1 cut(s)	654
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	6 cut(s)	33, 50, 162, 337, 697, 813
BsiEI	CGRYCG	1 cut(s)	34
BsiSI	CCGG	4 cut(s)	34, 810, 815, 887
BslFI	GGGAC	1 cut(s)	671
BsmAI	GTCTC	4 cut(s)	112, 772, 964, 967
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	671
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	6 cut(s)	33, 50, 162, 337, 697, 813
Bso31I	GGTCTC	2 cut(s)	772, 967
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp13I	TCCGGA	1 cut(s)	886
Bsp1407I	TGTACA	1 cut(s)	861
Bsp143I	GATC	5 cut(s)	325, 439, 457, 738, 788
BspACI	CCGC	2 cut(s)	698, 905
BspANI	GGCC	6 cut(s)	33, 50, 162, 337, 697, 813
BspCNI	CTCAG	3 cut(s)	35, 280, 464
BspEI	TCCGGA	1 cut(s)	886
BspHI	TCATGA	1 cut(s)	1013
BspLI	GGNNCC	2 cut(s)	435, 992
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	2 cut(s)	746, 796
BspTNI	GGTCTC	2 cut(s)	772, 967
BsrFI	RCCGGY	1 cut(s)	33
BsrGI	TGTACA	1 cut(s)	861
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	429, 643
BssMI	GATC	5 cut(s)	325, 439, 457, 738, 788
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	799
Bst4CI	ACNGT	3 cut(s)	130, 644, 868
Bst6I	CTCTTC	1 cut(s)	778
BstAUI	TGTACA	1 cut(s)	861
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	4 cut(s)	22, 267, 389, 451
BstDSI	CCRYGG	1 cut(s)	643
BstF5I	GGATG	1 cut(s)	926
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	5 cut(s)	328, 442, 460, 741, 791
BstMAI	GTCTC	4 cut(s)	112, 772, 964, 967
BstMBI	GATC	5 cut(s)	325, 439, 457, 738, 788
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 47, 235, 311
BstNI	CCWGG	1 cut(s)	799
BstSCI	CCNGG	2 cut(s)	797, 813
BstSLI	GKGCMC	1 cut(s)	565
BstV1I	GCAGC	1 cut(s)	284
BstV2I	GAAGAC	2 cut(s)	645, 897
BstZI	CGGCCG	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	6 cut(s)	33, 50, 162, 337, 697, 813
BtgI	CCRYGG	1 cut(s)	643
BtsCI	GGATG	1 cut(s)	926
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	1 cut(s)	11
CciI	TCATGA	1 cut(s)	1013
CfoI	GCGC	1 cut(s)	733
Cfr10I	RCCGGY	1 cut(s)	33
Cfr13I	GGNCC	5 cut(s)	49, 335, 695, 812, 991
Csp6I	GTAC	2 cut(s)	602, 862
CviAII	CATG	6 cut(s)	82, 674, 734, 773, 895, 1014
CviQI	GTAC	2 cut(s)	602, 862
DdeI	CTNAG	4 cut(s)	22, 267, 389, 451
DpnI	GATC	5 cut(s)	327, 441, 459, 740, 790
DpnII	GATC	5 cut(s)	325, 439, 457, 738, 788
EaeI	YGGCCR	2 cut(s)	31, 160
EagI	CGGCCG	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	778
EarI	CTCTTC	1 cut(s)	778
EclXI	CGGCCG	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	429
Eco31I	GGTCTC	2 cut(s)	772, 967
Eco47I	GGWCC	1 cut(s)	991
Eco52I	CGGCCG	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	309
EcoRI	GAATTC	1 cut(s)	818
EcoRII	CCWGG	1 cut(s)	797
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	6 cut(s)	85, 677, 737, 776, 898, 1017
FalI	AAGNNNNNCTT	4 cut(s)	413, 445, 708, 740
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	6 cut(s)	81, 673, 733, 772, 894, 1013
Fnu4HI	GCNGC	2 cut(s)	298, 698
FokI	GGATG	1 cut(s)	913
Fsp4HI	GCNGC	2 cut(s)	298, 698
FspBI	CTAG	2 cut(s)	461, 665
GlaI	GCGC	1 cut(s)	732
GluI	GCNGC	2 cut(s)	298, 698
GsaI	CCCAGC	1 cut(s)	922
GsuI	CTGGAG	1 cut(s)	964
HaeIII	GGCC	6 cut(s)	33, 50, 162, 337, 697, 813
HapII	CCGG	4 cut(s)	34, 810, 815, 887
HhaI	GCGC	1 cut(s)	733
Hin1II	CATG	6 cut(s)	85, 677, 737, 776, 898, 1017
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HinfI	GANTC	7 cut(s)	20, 134, 449, 480, 659, 806, 999
HpaII	CCGG	4 cut(s)	34, 810, 815, 887
HphI	GGTGA	4 cut(s)	164, 257, 410, 467
Hpy166II	GTNNAC	4 cut(s)	386, 471, 862, 864
Hpy188I	TCNGA	6 cut(s)	25, 145, 289, 444, 782, 995
Hpy188III	TCNNGA	7 cut(s)	58, 477, 554, 587, 887, 943, 1014
Hpy8I	GTNNAC	4 cut(s)	386, 471, 862, 864
HpyCH4III	ACNGT	3 cut(s)	130, 644, 868
HpyCH4V	TGCA	7 cut(s)	41, 68, 81, 173, 598, 614, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 47, 235, 311
HpyF3I	CTNAG	4 cut(s)	22, 267, 389, 451
Hsp92II	CATG	6 cut(s)	85, 677, 737, 776, 898, 1017
HspAI	GCGC	1 cut(s)	731
Kpn2I	TCCGGA	1 cut(s)	886
Kzo9I	GATC	5 cut(s)	325, 439, 457, 738, 788
LmnI	GCTCC	3 cut(s)	235, 433, 691
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	461, 665
MalI	GATC	5 cut(s)	327, 441, 459, 740, 790
MboI	GATC	5 cut(s)	325, 439, 457, 738, 788
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	4 cut(s)	280, 818, 900, 912
MlyI	GAGTC	3 cut(s)	14, 443, 653
MmeI	TCCRAC	1 cut(s)	782
MnlI	CCTC	6 cut(s)	212, 493, 615, 757, 779, 931
MroI	TCCGGA	1 cut(s)	886
MseI	TTAA	5 cut(s)	273, 410, 710, 747, 954
MspI	CCGG	4 cut(s)	34, 810, 815, 887
MspR9I	CCNGG	2 cut(s)	799, 815
Mva1269I	GAATGC	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	799
MwoI	GCNNNNNNNGC	4 cut(s)	15, 47, 235, 311
NciI	CCSGG	1 cut(s)	815
NdeII	GATC	5 cut(s)	325, 439, 457, 738, 788
NlaIII	CATG	6 cut(s)	85, 677, 737, 776, 898, 1017
NlaIV	GGNNCC	2 cut(s)	435, 992
NmeAIII	GCCGAG	1 cut(s)	9
PagI	TCATGA	1 cut(s)	1013
PctI	GAATGC	1 cut(s)	299
PfeI	GAWTC	4 cut(s)	134, 480, 806, 999
PkrI	GCNGC	2 cut(s)	299, 699
PleI	GAGTC	3 cut(s)	14, 443, 653
PpsI	GAGTC	3 cut(s)	14, 443, 653
PshBI	ATTAAT	2 cut(s)	710, 954
Psp6I	CCWGG	1 cut(s)	797
PspFI	CCCAGC	1 cut(s)	918
PspGI	CCWGG	1 cut(s)	797
PspN4I	GGNNCC	2 cut(s)	435, 992
PspPI	GGNCC	5 cut(s)	49, 335, 695, 812, 991
PsrI	GAACNNNNNNTAC	2 cut(s)	854, 886
RsaI	GTAC	2 cut(s)	603, 863
RsaNI	GTAC	2 cut(s)	602, 862
SaqAI	TTAA	5 cut(s)	273, 410, 710, 747, 954
SatI	GCNGC	2 cut(s)	298, 698
Sau3AI	GATC	5 cut(s)	325, 439, 457, 738, 788
Sau96I	GGNCC	5 cut(s)	49, 335, 695, 812, 991
SchI	GAGTC	3 cut(s)	14, 443, 653
ScrFI	CCNGG	2 cut(s)	799, 815
SduI	GDGCHC	1 cut(s)	565
SfaNI	GCATC	1 cut(s)	238
SinI	GGWCC	1 cut(s)	991
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	4 cut(s)	280, 818, 900, 912
SsiI	CCGC	2 cut(s)	698, 905
SspMI	CTAG	2 cut(s)	461, 665
StyD4I	CCNGG	2 cut(s)	797, 813
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	3 cut(s)	130, 644, 868
TaqI	TCGA	1 cut(s)	1007
TasI	AATT	4 cut(s)	280, 818, 900, 912
TatI	WGTACW	1 cut(s)	861
TauI	GCSGC	1 cut(s)	700
TfiI	GAWTC	4 cut(s)	134, 480, 806, 999
Tru1I	TTAA	5 cut(s)	273, 410, 710, 747, 954
Tru9I	TTAA	5 cut(s)	273, 410, 710, 747, 954
TseI	GCWGC	1 cut(s)	297
TspDTI	ATGAA	3 cut(s)	210, 472, 814
VpaK11BI	GGWCC	1 cut(s)	991
VspI	ATTAAT	2 cut(s)	710, 954
XapI	RAATTY	1 cut(s)	818
XspI	CTAG	2 cut(s)	461, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.