Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000076.1

Orthogroup ID

OG0003640

Physical Location & Seq

Genomic Coordinates Forward (+)

218846 .. 222366

Gene Structure 3521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000076.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atgggtcggaggcagaacgatccagaagccacccattactccactcccttcctcctctgggtgggtctggtctcctgtgctctggtctacgctcttctctctgtggtgcttaaacccaatgcgcccgagctccagtcaatggcattggtggagcagagtggggagaagggagagagtgatagggggtgttgcagagggattgagaatttggagctgtggggtgcagctgtgaagtggggttctgagtttaagttcaattcttctgaggagtgttgccaggcttgtaaagcaatgtgtactgggactgatgggccttgtttgtgtgatagttgggtcttctgtgggaagaaggaggcttgtggctctaaatttggtgagtgctggttgaagaagcagaaggatacattggcccctcagcgccaggaagcaggggagaaagttagttggacatctggaatcatctttgggagaggagagggcattgttggcttggaaacacaatatgggactctacatataaaacttttccctgactgtgcccctcattctgtggcctacattcttgagttgttggaattgcgtcattgtgcaggctgccaattttatcgtgcagagagccgtggggaatcatgggactcagaaggaaaccacattaaagatgctcctttcggccctccttttgcactggttcagggaacactggaagcccaaggagccacatttaagaagtttccaactgaagtttgcccaaccttaagaaggggttcggtagcatggattggctctggtcctgaatttttcataagccttgcgaaccatgaggagtggaaaaaagaatacactgtctttgcttctgttcttccagaggacatgtacattgctgagaaaatcactcagcttcccaccacccctgatgtttggaacaatatcaatgtgtcagtgttggagaagcctgttcctttgatgttgcgaagaatcaagacaagccatggggatctcaccagaaacggaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4 Pro_isomerase

Protein Analysis

338

Amino Acids

37.42

Weight (kDa)

5.89

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17070
fragaria_vesca	FvH4_5g20480 FvH4_5g20480 FvH4_7g09211
malus_domestica	MD06G1046500.v1.1 MD07G1096900.v1.1 MD07G1097200.v1.1
prunus_persica	Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.5G054800_v2.0.a1
pyrus_communis	pycom06g03920 pycom07g08000
rosa_chinensis	RchiOBHm_Chr1g0345271 RchiOBHm_Chr7g0205801
rosa_laevigata	RLG00000003353 RLG00000028842
rosa_multiflora	Rmu_sc0000076.1_g000049 Rmu_sc0002329.1_g000010 Rmu_sc0008518.1_g000009 Rmu_sc0011244.1_g000002
rosa_roxburghii	Rroxscaffold_3G00251970 Rroxscaffold_4G00309140
rosa_rugosa	Rorug01G0177100 Rorug07G0093200
rosa_samantha	Rh1AG195200 Rh1BG161300 Rh1CG179600 Rh1DG191700 Rh7AG224700 Rh7BG219900 Rh7CG238400 Rh7DG231400
rosa_wichuraiana	Rw1G016080 Rw7G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	87
AclWI	GGATC	2 cut(s)	14, 1002
AcsI	RAATTY	3 cut(s)	205, 368, 794
AcuI	CTGAAG	1 cut(s)	759
AfaI	GTAC	2 cut(s)	298, 875
AfiI	CCNNNNNNNGG	4 cut(s)	58, 61, 139, 759
AflII	CTTAAG	1 cut(s)	754
AflIII	ACRYGT	1 cut(s)	870
AgsI	TTSAA	2 cut(s)	256, 388
AjnI	CCWGG	2 cut(s)	276, 420
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	4 cut(s)	130, 214, 227, 898
AluI	AGCT	4 cut(s)	130, 214, 227, 898
Alw21I	GWGCWC	2 cut(s)	82, 132
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	2 cut(s)	14, 1002
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	4 cut(s)	311, 408, 552, 670
ApeKI	GCWGC	2 cut(s)	224, 594
ApoI	RAATTY	3 cut(s)	205, 368, 794
Asp700I	GAANNNNTTC	1 cut(s)	763
AspLEI	GCGC	2 cut(s)	124, 420
AspS9I	GGNCC	4 cut(s)	311, 409, 671, 788
AsuHPI	GGTGA	2 cut(s)	386, 991
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	788
BaeGI	GKGCMC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	328
Bbv12I	GWGCWC	2 cut(s)	82, 132
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	236, 581
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	603
BciT130I	CCWGG	2 cut(s)	278, 422
BciVI	GTATCC	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	76
BfoI	RGCGCY	1 cut(s)	421
BfrI	CTTAAG	1 cut(s)	754
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	2 cut(s)	225, 595
BlsI	GCNGC	2 cut(s)	226, 596
Bme1390I	CCNGG	2 cut(s)	278, 422
Bme18I	GGWCC	1 cut(s)	788
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	4 cut(s)	311, 409, 671, 788
BmiI	GGNNCC	2 cut(s)	411, 715
BmrFI	CCNGG	2 cut(s)	278, 422
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	649
BmuI	ACTGGG	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	3 cut(s)	619, 709, 988
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 61, 139, 759
Bse1I	ACTGG	4 cut(s)	133, 304, 690, 705
Bse3DI	GCAATG	2 cut(s)	297, 876
BseBI	CCWGG	2 cut(s)	278, 422
BseDI	CCNNGG	3 cut(s)	619, 709, 988
BseLI	CCNNNNNNNGG	4 cut(s)	58, 61, 139, 759
BseMI	GCAATG	2 cut(s)	297, 876
BseMII	CTCAG	6 cut(s)	234, 255, 428, 651, 873, 908
BseNI	ACTGG	4 cut(s)	133, 304, 690, 705
BseRI	GAGGAG	4 cut(s)	44, 281, 486, 836
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	2 cut(s)	236, 581
BsgI	GTGCAG	3 cut(s)	243, 609, 630
BshFI	GGCC	4 cut(s)	313, 410, 554, 672
BsiHKAI	GWGCWC	2 cut(s)	82, 132
BsiHKCI	CYCGRG	1 cut(s)	125
BslFI	GGGAC	3 cut(s)	316, 520, 647
BslI	CCNNNNNNNGG	4 cut(s)	58, 61, 139, 759
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	3 cut(s)	316, 520, 647
BsnI	GGCC	4 cut(s)	313, 410, 554, 672
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	3 cut(s)	82, 132, 541
Bsp1407I	TGTACA	1 cut(s)	873
Bsp143I	GATC	2 cut(s)	19, 994
Bsp19I	CCATGG	1 cut(s)	988
BspANI	GGCC	4 cut(s)	313, 410, 554, 672
BspCNI	CTCAG	6 cut(s)	235, 256, 427, 650, 874, 907
BspLI	GGNNCC	2 cut(s)	411, 715
BspPI	GGATC	2 cut(s)	14, 1002
BspQI	GCTCTTC	1 cut(s)	99
BspTI	CTTAAG	1 cut(s)	754
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	2 cut(s)	297, 876
BsrGI	TGTACA	1 cut(s)	873
BsrI	ACTGG	4 cut(s)	133, 304, 690, 705
BssECI	CCNNGG	3 cut(s)	619, 709, 988
BssMI	GATC	2 cut(s)	19, 994
BssT1I	CCWWGG	2 cut(s)	709, 988
Bst2UI	CCWGG	2 cut(s)	278, 422
Bst4CI	ACNGT	2 cut(s)	536, 844
Bst6I	CTCTTC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	754
BstAUI	TGTACA	1 cut(s)	873
BstC8I	GCNNGC	1 cut(s)	592
BstDEI	CTNAG	6 cut(s)	243, 264, 414, 637, 882, 894
BstDSI	CCRYGG	2 cut(s)	619, 988
BstENI	CCTNNNNNAGG	1 cut(s)	757
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	2 cut(s)	124, 420
BstKTI	GATC	2 cut(s)	22, 997
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	2 cut(s)	19, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 486, 713
BstNI	CCWGG	2 cut(s)	278, 422
BstNSI	RCATGY	1 cut(s)	874
BstSCI	CCNGG	2 cut(s)	276, 420
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	2 cut(s)	236, 581
BstV2I	GAAGAC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	994
BstYI	RGATCY	1 cut(s)	994
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	4 cut(s)	313, 410, 554, 672
BtgI	CCRYGG	2 cut(s)	619, 988
BtsIMutI	CAGTG	4 cut(s)	683, 698, 840, 945
Cac8I	GCNNGC	1 cut(s)	592
CfoI	GCGC	2 cut(s)	124, 420
Cfr13I	GGNCC	4 cut(s)	311, 409, 671, 788
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	2 cut(s)	297, 874
CviAII	CATG	5 cut(s)	630, 774, 818, 871, 989
CviQI	GTAC	2 cut(s)	297, 874
DdeI	CTNAG	6 cut(s)	243, 264, 414, 637, 882, 894
DpnI	GATC	2 cut(s)	21, 996
DpnII	GATC	2 cut(s)	19, 994
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	709, 988
Eco24I	GRGCYC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	788
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	759
Eco88I	CYCGRG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	757
EcoRII	CCWGG	2 cut(s)	276, 420
EcoT14I	CCWWGG	2 cut(s)	709, 988
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	2 cut(s)	709, 988
FaeI	CATG	5 cut(s)	633, 777, 821, 874, 992
FaiI	YATR	9 cut(s)	504, 516, 518, 631, 775, 803, 819, 872, 990
FaqI	GGGAC	3 cut(s)	316, 520, 647
FatI	CATG	5 cut(s)	629, 773, 817, 870, 988
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	225, 595
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	225, 595
GlaI	GCGC	2 cut(s)	123, 419
GluI	GCNGC	2 cut(s)	225, 595
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	4 cut(s)	313, 410, 554, 672
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	2 cut(s)	124, 420
Hin1II	CATG	5 cut(s)	633, 777, 821, 874, 992
Hin6I	GCGC	2 cut(s)	122, 418
HinP1I	GCGC	2 cut(s)	122, 418
HinfI	GANTC	5 cut(s)	456, 508, 626, 635, 975
HphI	GGTGA	2 cut(s)	386, 991
Hpy166II	GTNNAC	2 cut(s)	88, 297
Hpy188I	TCNGA	4 cut(s)	9, 244, 265, 640
Hpy188III	TCNNGA	6 cut(s)	23, 453, 563, 791, 863, 979
Hpy8I	GTNNAC	2 cut(s)	88, 297
HpyAV	CCTTC	6 cut(s)	58, 160, 343, 391, 635, 753
HpyCH4III	ACNGT	2 cut(s)	536, 844
HpyCH4V	TGCA	5 cut(s)	192, 224, 590, 611, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 486, 713
HpyF3I	CTNAG	6 cut(s)	243, 264, 414, 637, 882, 894
Hsp92II	CATG	5 cut(s)	633, 777, 821, 874, 992
HspAI	GCGC	2 cut(s)	122, 418
Kzo9I	GATC	2 cut(s)	19, 994
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	5 cut(s)	135, 151, 211, 667, 713
Lsp1109I	GCAGC	2 cut(s)	236, 581
LweI	GCATC	1 cut(s)	649
MalI	GATC	2 cut(s)	21, 996
MboI	GATC	2 cut(s)	19, 994
MboII	GAAGA	7 cut(s)	86, 252, 328, 358, 400, 851, 984
MflI	RGATCY	1 cut(s)	994
MhlI	GDGCHC	3 cut(s)	82, 132, 541
MluCI	AATT	6 cut(s)	205, 256, 368, 575, 599, 794
MlyI	GAGTC	2 cut(s)	502, 629
MmeI	TCCRAC	4 cut(s)	425, 552, 758, 924
MroXI	GAANNNNTTC	1 cut(s)	763
MseI	TTAA	5 cut(s)	111, 249, 654, 723, 755
MspA1I	CMGCKG	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	754
MspR9I	CCNGG	2 cut(s)	278, 422
MvaI	CCWGG	2 cut(s)	278, 422
MwoI	GCNNNNNNNGC	3 cut(s)	287, 486, 713
NcoI	CCATGG	1 cut(s)	988
NdeII	GATC	2 cut(s)	19, 994
NlaIII	CATG	5 cut(s)	633, 777, 821, 874, 992
NlaIV	GGNNCC	2 cut(s)	411, 715
NspI	RCATGY	1 cut(s)	874
PciI	ACATGT	1 cut(s)	870
PciSI	GCTCTTC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	763
PfeI	GAWTC	3 cut(s)	456, 626, 975
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	226, 596
PleI	GAGTC	2 cut(s)	502, 629
PpsI	GAGTC	2 cut(s)	502, 629
PscI	ACATGT	1 cut(s)	870
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	276, 420
PspGI	CCWGG	2 cut(s)	276, 420
PspN4I	GGNNCC	2 cut(s)	411, 715
PspPI	GGNCC	4 cut(s)	311, 409, 671, 788
PsuI	RGATCY	1 cut(s)	994
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	298, 875
RsaNI	GTAC	2 cut(s)	297, 874
SacI	GAGCTC	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	5 cut(s)	111, 249, 654, 723, 755
SatI	GCNGC	2 cut(s)	225, 595
Sau3AI	GATC	2 cut(s)	19, 994
Sau96I	GGNCC	4 cut(s)	311, 409, 671, 788
SchI	GAGTC	2 cut(s)	502, 629
ScrFI	CCNGG	2 cut(s)	278, 422
SduI	GDGCHC	3 cut(s)	82, 132, 541
SetI	ASST	5 cut(s)	132, 216, 229, 755, 900
SfaNI	GCATC	1 cut(s)	649
SinI	GGWCC	1 cut(s)	788
SmlI	CTYRAG	2 cut(s)	563, 754
SmoI	CTYRAG	2 cut(s)	563, 754
Sse9I	AATT	6 cut(s)	205, 256, 368, 575, 599, 794
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	276, 420
StyI	CCWWGG	2 cut(s)	709, 988
TaaI	ACNGT	2 cut(s)	536, 844
TasI	AATT	6 cut(s)	205, 256, 368, 575, 599, 794
TatI	WGTACW	2 cut(s)	296, 873
TfiI	GAWTC	3 cut(s)	456, 626, 975
Tru1I	TTAA	5 cut(s)	111, 249, 654, 723, 755
Tru9I	TTAA	5 cut(s)	111, 249, 654, 723, 755
TscAI	CASTG	4 cut(s)	690, 705, 847, 945
TseI	GCWGC	2 cut(s)	224, 594
TspDTI	ATGAA	1 cut(s)	790
TspRI	CASTG	4 cut(s)	690, 705, 847, 945
Van91I	CCANNNNNTGG	1 cut(s)	139
Vha464I	CTTAAG	1 cut(s)	754
VpaK11BI	GGWCC	1 cut(s)	788
XagI	CCTNNNNNAGG	1 cut(s)	757
XapI	RAATTY	3 cut(s)	205, 368, 794
XceI	RCATGY	1 cut(s)	874
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.