Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003640

Physical Location & Seq

Genomic Coordinates Forward (+)

8942643 .. 8945969

Gene Structure 3327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09211.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGTCGCCGGCAGACCGAGTCCGACCTTGGCCGTTTTGCCCTTGTGGCACTTCTCCTCATTGGTGCAATCTCCTGCTGCATGCTTTACCTTTTCATCTCTATGGTCCTGAAACCCAACAGTGCGACATTTGTTTCGAATTCAGAGCTGGGTGAGAATGGCGGTGAGGTTGGTTTGGTGAGTGAAGAAGATGGTGAGTGCTGTAGTGGGATCGAGCATTTGGAGCTTTGGGGTGATGCAGTGAAATGGGGTGCTCAGTTTAAGGTCAATTCTTCAAAGGACTGCTGCATGGCTTGTAAGGATATGTGTGGGGATCGAAATGGGGCTTGTTTGTGTGATTCTTGGGTGTTTTGTGGGGATAGAGAGGCTTGTGGAGATAAATTTGGTGAGTGTTGGTTAAAAAAACAAAAGGATACCATGGATCCTGATCGGCGAGACTCAGGGGATCTAGTTATGTGGACTTCTGGACATATATTTGGAGAAGGAGAGGGTATTGTTGGCATGGAAACAGAATATGGGATTCTTCGTATAAAGCTCTTTGTTGATTGTGCTCCTCGTTCTGTATTCTATATTCTTGAGCTGTTGCGAGAGCATTATTGTGGGGGTTGTCAATTTCATCGTGTGGAAAGCCGTGGAAGCTATTGGGACTCCATAGGAAATCACATCCAAAATGCTCCCGTTGGCCCCCCTTTTGGATTAATACAAGGAACAATTGAAGCCCACGGGATTATATTTAAGAAGATTCCAAAAGAGGGTAACCACAACATCAGAAGGGGATCGGTAGCCTGGGTTGGTTCTGGTCCAGGTTTCTTTATCAGCCTAGCCAACCATTTTGAGTGGAAAAAAGCATACACCGTGTTTGGTTCTGTTCTTCCTGAAGACATGGAGATTGCAGAGAAAATAGCACAGCTTCCAACCAAGCCAGAGGTTTGGAGTAACATTGATGTCTCTGTCTTGGAGAGACCTGTTGCTTTACAGTTCCAAAGAATCAAATCAAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4 Pro_isomerase

Protein Analysis

335

Amino Acids

37.04

Weight (kDa)

5.37

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	166 - 316	1.1e-12	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17070
fragaria_vesca	FvH4_5g20480 FvH4_5g20480 FvH4_7g09211
malus_domestica	MD06G1046500.v1.1 MD07G1096900.v1.1 MD07G1097200.v1.1
prunus_persica	Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.5G054800_v2.0.a1
pyrus_communis	pycom06g03920 pycom07g08000
rosa_chinensis	RchiOBHm_Chr1g0345271 RchiOBHm_Chr7g0205801
rosa_laevigata	RLG00000003353 RLG00000028842
rosa_multiflora	Rmu_sc0000076.1_g000049 Rmu_sc0002329.1_g000010 Rmu_sc0008518.1_g000009 Rmu_sc0011244.1_g000002
rosa_roxburghii	Rroxscaffold_3G00251970 Rroxscaffold_4G00309140
rosa_rugosa	Rorug01G0177100 Rorug07G0093200
rosa_samantha	Rh1AG195200 Rh1BG161300 Rh1CG179600 Rh1DG191700 Rh7AG224700 Rh7BG219900 Rh7CG238400 Rh7DG231400
rosa_wichuraiana	Rw1G016080 Rw7G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1003
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	6 cut(s)	218, 321, 416, 429, 453, 784
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	3 cut(s)	139, 380, 997
AcuI	CTGAAG	1 cut(s)	897
AfiI	CCNNNNNNNGG	2 cut(s)	692, 752
AgsI	TTSAA	2 cut(s)	276, 716
AjnI	CCWGG	2 cut(s)	785, 802
AluBI	AGCT	6 cut(s)	148, 226, 535, 580, 639, 910
AluI	AGCT	6 cut(s)	148, 226, 535, 580, 639, 910
Alw21I	GWGCWC	2 cut(s)	256, 553
Alw26I	GTCTC	3 cut(s)	429, 952, 955
AlwI	GGATC	6 cut(s)	218, 321, 416, 429, 453, 784
AoxI	GGCC	2 cut(s)	31, 682
ApeKI	GCWGC	2 cut(s)	78, 285
ApoI	RAATTY	3 cut(s)	139, 380, 997
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AseI	ATTAAT	1 cut(s)	698
AspS9I	GGNCC	3 cut(s)	106, 683, 800
AsuHPI	GGTGA	6 cut(s)	164, 176, 190, 206, 245, 398
AsuII	TTCGAA	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	106, 800
BamHI	GGATCC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	2 cut(s)	256, 553
BbvI	GCAGC	2 cut(s)	65, 272
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	18, 615
BciT130I	CCWGG	2 cut(s)	787, 804
BciVI	GTATCC	1 cut(s)	406
BcoDI	GTCTC	3 cut(s)	429, 952, 955
BfaI	CTAG	2 cut(s)	449, 821
BfmI	CTRYAG	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	406
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	2 cut(s)	79, 286
BlsI	GCNGC	2 cut(s)	80, 287
Bme1390I	CCNGG	2 cut(s)	787, 804
Bme18I	GGWCC	2 cut(s)	106, 800
BmgT120I	GGNCC	3 cut(s)	106, 683, 800
BmiI	GGNNCC	2 cut(s)	423, 685
BmrFI	CCNGG	2 cut(s)	787, 804
BmsI	GCATC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	885
Bpu14I	TTCGAA	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	596
BsaBI	GATNNNNATC	1 cut(s)	426
BsaI	GGTCTC	1 cut(s)	955
BsaJI	CCNNGG	5 cut(s)	28, 417, 631, 721, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	692, 752
Bse118I	RCCGGY	1 cut(s)	9
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	787, 804
BseDI	CCNNGG	5 cut(s)	28, 417, 631, 721, 786
BseGI	GGATG	1 cut(s)	663
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	692, 752
BseMII	CTCAG	2 cut(s)	269, 453
BseRI	GAGGAG	2 cut(s)	47, 543
BseXI	GCAGC	2 cut(s)	65, 272
BseYI	CCCAGC	1 cut(s)	148
BshFI	GGCC	2 cut(s)	33, 684
BsiHKAI	GWGCWC	2 cut(s)	256, 553
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	2 cut(s)	692, 752
BsmAI	GTCTC	3 cut(s)	429, 952, 955
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	2 cut(s)	33, 684
Bso31I	GGTCTC	1 cut(s)	955
Bsp119I	TTCGAA	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	256, 553
Bsp143I	GATC	6 cut(s)	210, 313, 421, 427, 445, 776
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	2 cut(s)	33, 684
BspCNI	CTCAG	2 cut(s)	268, 452
BspLI	GGNNCC	2 cut(s)	423, 685
BspPI	GGATC	6 cut(s)	218, 321, 416, 429, 453, 784
BspT104I	TTCGAA	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	955
BsrFI	RCCGGY	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	5 cut(s)	28, 417, 631, 721, 786
BssMI	GATC	6 cut(s)	210, 313, 421, 427, 445, 776
BssT1I	CCWWGG	2 cut(s)	28, 417
Bst2UI	CCWGG	2 cut(s)	787, 804
Bst4CI	ACNGT	3 cut(s)	122, 856, 978
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	11, 83
BstDEI	CTNAG	2 cut(s)	255, 439
BstDSI	CCRYGG	3 cut(s)	417, 631, 721
BstEII	GGTNACC	1 cut(s)	755
BstF5I	GGATG	1 cut(s)	663
BstKTI	GATC	6 cut(s)	213, 316, 424, 430, 448, 779
BstMAI	GTCTC	3 cut(s)	429, 952, 955
BstMBI	GATC	6 cut(s)	210, 313, 421, 427, 445, 776
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 223, 636
BstNI	CCWGG	2 cut(s)	787, 804
BstNSI	RCATGY	1 cut(s)	85
BstPI	GGTNACC	1 cut(s)	755
BstSCI	CCNGG	2 cut(s)	785, 802
BstSFI	CTRYAG	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	65, 272
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	2 cut(s)	421, 445
BstXI	CCANNNNNNTGG	1 cut(s)	930
BstYI	RGATCY	2 cut(s)	421, 445
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	33, 684
BtgI	CCRYGG	3 cut(s)	417, 631, 721
BtsCI	GGATG	1 cut(s)	663
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	127, 246
Cac8I	GCNNGC	2 cut(s)	11, 83
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	3 cut(s)	106, 683, 800
CviAII	CATG	5 cut(s)	82, 289, 418, 502, 883
DdeI	CTNAG	2 cut(s)	255, 439
DpnI	GATC	6 cut(s)	212, 315, 423, 429, 447, 778
DpnII	GATC	6 cut(s)	210, 313, 421, 427, 445, 776
EaeI	YGGCCR	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	28, 417
Eco31I	GGTCTC	1 cut(s)	955
Eco47I	GGWCC	2 cut(s)	106, 800
Eco57I	CTGAAG	1 cut(s)	897
Eco91I	GGTNACC	1 cut(s)	755
EcoO65I	GGTNACC	1 cut(s)	755
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	785, 802
EcoT14I	CCWWGG	2 cut(s)	28, 417
ErhI	CCWWGG	2 cut(s)	28, 417
FaeI	CATG	5 cut(s)	85, 292, 421, 505, 886
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	5 cut(s)	81, 288, 417, 501, 882
Fnu4HI	GCNGC	2 cut(s)	79, 286
FokI	GGATG	1 cut(s)	650
Fsp4HI	GCNGC	2 cut(s)	79, 286
FspBI	CTAG	2 cut(s)	449, 821
GluI	GCNGC	2 cut(s)	79, 286
GsaI	CCCAGC	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	33, 684
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	5 cut(s)	85, 292, 421, 505, 886
HinfI	GANTC	7 cut(s)	20, 338, 437, 520, 647, 742, 987
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	6 cut(s)	164, 176, 190, 206, 245, 398
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	3 cut(s)	25, 145, 770
Hpy188III	TCNNGA	5 cut(s)	109, 425, 465, 575, 875
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	2 cut(s)	476, 765
HpyCH4III	ACNGT	3 cut(s)	122, 856, 978
HpyCH4V	TGCA	5 cut(s)	68, 81, 239, 288, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 223, 636
HpyF3I	CTNAG	2 cut(s)	255, 439
Hsp92II	CATG	5 cut(s)	85, 292, 421, 505, 886
KroI	GCCGGC	1 cut(s)	9
KroNI	GCCGGC	1 cut(s)	11
Kzo9I	GATC	6 cut(s)	210, 313, 421, 427, 445, 776
LmnI	GCTCC	3 cut(s)	223, 556, 679
Lsp1109I	GCAGC	2 cut(s)	65, 272
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	2 cut(s)	449, 821
MaeIII	GTNAC	2 cut(s)	755, 935
MalI	GATC	6 cut(s)	212, 315, 423, 429, 447, 778
MboI	GATC	6 cut(s)	210, 313, 421, 427, 445, 776
MboII	GAAGA	7 cut(s)	197, 200, 264, 515, 751, 863, 890
MfeI	CAATTG	1 cut(s)	711
MflI	RGATCY	2 cut(s)	421, 445
MhlI	GDGCHC	2 cut(s)	256, 553
MluCI	AATT	6 cut(s)	139, 268, 380, 611, 711, 997
MlyI	GAGTC	3 cut(s)	29, 431, 641
MmeI	TCCRAC	2 cut(s)	48, 938
MnlI	CCTC	7 cut(s)	68, 160, 358, 481, 564, 745, 919
MroNI	GCCGGC	1 cut(s)	9
MseI	TTAA	4 cut(s)	261, 398, 698, 735
MslI	CAYNNNNRTG	2 cut(s)	101, 597
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	2 cut(s)	787, 804
MunI	CAATTG	1 cut(s)	711
MvaI	CCWGG	2 cut(s)	787, 804
MwoI	GCNNNNNNNGC	3 cut(s)	47, 223, 636
NaeI	GCCGGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	6 cut(s)	210, 313, 421, 427, 445, 776
NgoMIV	GCCGGC	1 cut(s)	9
NlaIII	CATG	5 cut(s)	85, 292, 421, 505, 886
NlaIV	GGNNCC	2 cut(s)	423, 685
NspI	RCATGY	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	137
PaeI	GCATGC	1 cut(s)	85
PdiI	GCCGGC	1 cut(s)	11
PfeI	GAWTC	4 cut(s)	338, 520, 742, 987
PflFI	GACNNNGTC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	80, 287
PleI	GAGTC	3 cut(s)	28, 431, 641
PpsI	GAGTC	3 cut(s)	28, 431, 641
PshBI	ATTAAT	1 cut(s)	698
PsiI	TTATAA	1 cut(s)	1003
Psp6I	CCWGG	2 cut(s)	785, 802
PspEI	GGTNACC	1 cut(s)	755
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	2 cut(s)	785, 802
PspN4I	GGNNCC	2 cut(s)	423, 685
PspPI	GGNCC	3 cut(s)	106, 683, 800
PsuI	RGATCY	2 cut(s)	421, 445
PsyI	GACNNNGTC	1 cut(s)	19
RseI	CAYNNNNRTG	2 cut(s)	101, 597
SaqAI	TTAA	4 cut(s)	261, 398, 698, 735
SatI	GCNGC	2 cut(s)	79, 286
Sau3AI	GATC	6 cut(s)	210, 313, 421, 427, 445, 776
Sau96I	GGNCC	3 cut(s)	106, 683, 800
SchI	GAGTC	3 cut(s)	29, 431, 641
ScrFI	CCNGG	2 cut(s)	787, 804
SduI	GDGCHC	2 cut(s)	256, 553
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	202
SfuI	TTCGAA	1 cut(s)	137
SinI	GGWCC	2 cut(s)	106, 800
SmiMI	CAYNNNNRTG	2 cut(s)	101, 597
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SphI	GCATGC	1 cut(s)	85
Sse9I	AATT	6 cut(s)	139, 268, 380, 611, 711, 997
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	2 cut(s)	449, 821
StyD4I	CCNGG	2 cut(s)	785, 802
StyI	CCWWGG	2 cut(s)	28, 417
TaaI	ACNGT	3 cut(s)	122, 856, 978
TaqI	TCGA	3 cut(s)	137, 213, 316
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	6 cut(s)	139, 268, 380, 611, 711, 997
TfiI	GAWTC	4 cut(s)	338, 520, 742, 987
Tru1I	TTAA	4 cut(s)	261, 398, 698, 735
Tru9I	TTAA	4 cut(s)	261, 398, 698, 735
TscAI	CASTG	2 cut(s)	127, 246
TseI	GCWGC	2 cut(s)	78, 285
TspDTI	ATGAA	2 cut(s)	85, 605
TspRI	CASTG	2 cut(s)	127, 246
Tth111I	GACNNNGTC	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	106, 800
VspI	ATTAAT	1 cut(s)	698
XapI	RAATTY	3 cut(s)	139, 380, 997
XceI	RCATGY	1 cut(s)	85
XspI	CTAG	2 cut(s)	449, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.