Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003640

Physical Location & Seq

Genomic Coordinates Forward (+)

35786141 .. 35789396

Gene Structure 3256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G016080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGTCGCCGGCAGAACGAGTCCGACCTCGGCCGTTTTGCACTTCTGGCGCTTCTCCTTATGGGTGCAATCTCCTGCTGCATGCTCTACCTGTTCATCTCTATGGTCTTGAAACCCAATAGTGCCACATTTGCTCCAATTTCAGAGCTGGGTGAGAATGGCGGTGAGGTTGTTTTGGCGGGTAAAGAAGAAGGTGAGTGTTGTAGAGGGATCGAGCATTTGGAGCTTTGGGGTGATGCTGTGAAATGGGGGGCTGAGTTTAGATGCAATTCTTCGAAGGAGTGCTGCATGGCTTGTAAGGATATGTGTGGGGATCCAAATGGGCCTTGTTTGTGTGATTCTTGGGTGTTTTGTGGGGATAGAGAGGCTTGCGGAGATAAGTTTGGTGAGTGTTGGTTAAAAAAACAAAAGGATACATTGGAGCCTGATCGGCGAGACTCAGGGGATCTAGTTATGTGGACTTCTGGACATATATTTGGGAAAGGAGAGGGTGTCGTTGGCTTGGAAACAGAATATGGTATTCTTCGTATAAAGCTCTTTGTTGATTGTGCCCCACATTCTGTATTCTATATTCTTGAGCTGTTGCGAGAGCATTATTGTGGAGGTTGCCAATTTTATCGTGCAGAAAGCCGTGGAAGCTTTTGGGACTCCATAGGAAATCATGTCCAAAATGCTCCCTTTGGCCCTCCTTTTGGACTTGTACAAGGAACACTTGAAGCCCACGGGATTATATTTAAGGGATTCCAAGAGAGGGTAAACACTACATCAGAAGGGGATCGGTTGCCTGGGTTGGTTCTGGTCCAGGTTTCTTTATCAGCCTGGCCAACCATTTTGAGTGGAAAAAAGCATACAGCGTGTTTGGTTCTGTTCTTCCCGAAGACATGGAAATTGCAGAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4 Pro_isomerase

Protein Analysis

300

Amino Acids

33.23

Weight (kDa)

5.6

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17070
fragaria_vesca	FvH4_5g20480 FvH4_5g20480 FvH4_7g09211
malus_domestica	MD06G1046500.v1.1 MD07G1096900.v1.1 MD07G1097200.v1.1
prunus_persica	Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.5G054800_v2.0.a1
pyrus_communis	pycom06g03920 pycom07g08000
rosa_chinensis	RchiOBHm_Chr1g0345271 RchiOBHm_Chr7g0205801
rosa_laevigata	RLG00000003353 RLG00000028842
rosa_multiflora	Rmu_sc0000076.1_g000049 Rmu_sc0002329.1_g000010 Rmu_sc0008518.1_g000009 Rmu_sc0011244.1_g000002
rosa_roxburghii	Rroxscaffold_3G00251970 Rroxscaffold_4G00309140
rosa_rugosa	Rorug01G0177100 Rorug07G0093200
rosa_samantha	Rh1AG195200 Rh1BG161300 Rh1CG179600 Rh1DG191700 Rh7AG224700 Rh7BG219900 Rh7CG238400 Rh7DG231400
rosa_wichuraiana	Rw1G016080 Rw7G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	162, 179, 372
AclWI	GGATC	5 cut(s)	218, 308, 321, 453, 783
AcoI	YGGCCR	2 cut(s)	31, 821
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	2 cut(s)	692, 751
AgsI	TTSAA	2 cut(s)	112, 716
AjnI	CCWGG	3 cut(s)	784, 801, 818
AluBI	AGCT	5 cut(s)	148, 226, 535, 580, 639
AluI	AGCT	5 cut(s)	148, 226, 535, 580, 639
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	5 cut(s)	218, 308, 321, 453, 783
AoxI	GGCC	4 cut(s)	31, 323, 682, 821
ApeKI	GCWGC	2 cut(s)	78, 285
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	3 cut(s)	323, 683, 799
AsuHPI	GGTGA	5 cut(s)	164, 176, 206, 245, 398
AsuII	TTCGAA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	799
BaeGI	GKGCMC	1 cut(s)	553
BalI	TGGCCA	1 cut(s)	823
BamHI	GGATCC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	884
BbvI	GCAGC	2 cut(s)	65, 272
BceAI	ACGGC	2 cut(s)	18, 615
BciT130I	CCWGG	3 cut(s)	786, 803, 820
BciVI	GTATCC	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	1 cut(s)	449
BfoI	RGCGCY	1 cut(s)	53
BfuI	GTATCC	1 cut(s)	406
BglI	GCCNNNNNGGC	1 cut(s)	430
BisI	GCNGC	2 cut(s)	79, 286
BlsI	GCNGC	2 cut(s)	80, 287
Bme1390I	CCNGG	3 cut(s)	786, 803, 820
Bme18I	GGWCC	1 cut(s)	799
BmgT120I	GGNCC	3 cut(s)	323, 683, 799
BmiI	GGNNCC	2 cut(s)	315, 423
BmrFI	CCNGG	3 cut(s)	786, 803, 820
BmsI	GCATC	2 cut(s)	226, 254
BpiI	GAAGAC	1 cut(s)	884
Bpu14I	TTCGAA	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	596
BsaJI	CCNNGG	4 cut(s)	28, 631, 721, 785
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 477, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	692, 751
Bse118I	RCCGGY	1 cut(s)	9
BseBI	CCWGG	3 cut(s)	786, 803, 820
BseDI	CCNNGG	4 cut(s)	28, 631, 721, 785
BseLI	CCNNNNNNNGG	2 cut(s)	692, 751
BseMII	CTCAG	2 cut(s)	246, 453
BseSI	GKGCMC	1 cut(s)	553
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	65, 272
BseYI	CCCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	642
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	4 cut(s)	33, 325, 684, 823
BsiEI	CGRYCG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	2 cut(s)	692, 751
BsmAI	GTCTC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	4 cut(s)	33, 325, 684, 823
Bsp119I	TTCGAA	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp1407I	TGTACA	1 cut(s)	700
Bsp143I	GATC	5 cut(s)	210, 313, 427, 445, 775
BspACI	CCGC	3 cut(s)	162, 179, 372
BspANI	GGCC	4 cut(s)	33, 325, 684, 823
BspCNI	CTCAG	2 cut(s)	247, 452
BspLI	GGNNCC	2 cut(s)	315, 423
BspPI	GGATC	5 cut(s)	218, 308, 321, 453, 783
BspT104I	TTCGAA	1 cut(s)	275
BsrFI	RCCGGY	1 cut(s)	9
BsrGI	TGTACA	1 cut(s)	700
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	4 cut(s)	28, 631, 721, 785
BssMI	GATC	5 cut(s)	210, 313, 427, 445, 775
Bst2UI	CCWGG	3 cut(s)	786, 803, 820
BstAUI	TGTACA	1 cut(s)	700
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	11, 83, 370
BstDEI	CTNAG	2 cut(s)	255, 439
BstDSI	CCRYGG	2 cut(s)	631, 721
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	5 cut(s)	213, 316, 430, 448, 778
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	5 cut(s)	210, 313, 427, 445, 775
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 131, 223, 430, 636
BstNI	CCWGG	3 cut(s)	786, 803, 820
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	3 cut(s)	784, 801, 818
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	2 cut(s)	65, 272
BstV2I	GAAGAC	1 cut(s)	884
BstX2I	RGATCY	2 cut(s)	313, 445
BstYI	RGATCY	2 cut(s)	313, 445
BstZI	CGGCCG	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	4 cut(s)	33, 325, 684, 823
BtgI	CCRYGG	2 cut(s)	631, 721
Cac8I	GCNNGC	3 cut(s)	11, 83, 370
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	3 cut(s)	323, 683, 799
Csp6I	GTAC	1 cut(s)	701
CviAII	CATG	4 cut(s)	82, 289, 662, 882
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	2 cut(s)	255, 439
DpnI	GATC	5 cut(s)	212, 315, 429, 447, 777
DpnII	GATC	5 cut(s)	210, 313, 427, 445, 775
EaeI	YGGCCR	2 cut(s)	31, 821
EagI	CGGCCG	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	799
Eco52I	CGGCCG	1 cut(s)	31
EcoRII	CCWGG	3 cut(s)	784, 801, 818
FaeI	CATG	4 cut(s)	85, 292, 665, 885
FalI	AAGNNNNNCTT	2 cut(s)	696, 728
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	4 cut(s)	81, 288, 661, 881
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	79, 286
Fsp4HI	GCNGC	2 cut(s)	79, 286
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	2 cut(s)	79, 286
GsaI	CCCAGC	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	4 cut(s)	33, 325, 684, 823
HapII	CCGG	1 cut(s)	10
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	85, 292, 665, 885
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	637
HinfI	GANTC	5 cut(s)	20, 338, 437, 647, 741
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	5 cut(s)	164, 176, 206, 245, 398
Hpy166II	GTNNAC	2 cut(s)	459, 757
Hpy188I	TCNGA	3 cut(s)	25, 145, 769
Hpy188III	TCNNGA	4 cut(s)	109, 465, 575, 874
Hpy8I	GTNNAC	2 cut(s)	459, 757
HpyAV	CCTTC	3 cut(s)	185, 271, 764
HpyCH4V	TGCA	7 cut(s)	41, 68, 81, 267, 288, 623, 892
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 131, 223, 430, 636
HpyF3I	CTNAG	2 cut(s)	255, 439
Hsp92II	CATG	4 cut(s)	85, 292, 665, 885
HspAI	GCGC	1 cut(s)	50
KroI	GCCGGC	1 cut(s)	9
KroNI	GCCGGC	1 cut(s)	11
Kzo9I	GATC	5 cut(s)	210, 313, 427, 445, 775
LmnI	GCTCC	4 cut(s)	139, 223, 421, 679
Lsp1109I	GCAGC	2 cut(s)	65, 272
LweI	GCATC	2 cut(s)	226, 254
MaeI	CTAG	1 cut(s)	449
MalI	GATC	5 cut(s)	212, 315, 429, 447, 777
MboI	GATC	5 cut(s)	210, 313, 427, 445, 775
MboII	GAAGA	5 cut(s)	200, 264, 515, 862, 889
MflI	RGATCY	2 cut(s)	313, 445
MhlI	GDGCHC	1 cut(s)	553
MlsI	TGGCCA	1 cut(s)	823
MluCI	AATT	4 cut(s)	138, 268, 611, 887
MluNI	TGGCCA	1 cut(s)	823
MlyI	GAGTC	3 cut(s)	29, 431, 641
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	8 cut(s)	38, 160, 200, 358, 481, 596, 696, 744
Mox20I	TGGCCA	1 cut(s)	823
MroNI	GCCGGC	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	823
MseI	TTAA	2 cut(s)	398, 735
MslI	CAYNNNNRTG	2 cut(s)	101, 597
Msp20I	TGGCCA	1 cut(s)	823
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	3 cut(s)	786, 803, 820
MvaI	CCWGG	3 cut(s)	786, 803, 820
MwoI	GCNNNNNNNGC	5 cut(s)	47, 131, 223, 430, 636
NaeI	GCCGGC	1 cut(s)	11
NdeII	GATC	5 cut(s)	210, 313, 427, 445, 775
NgoMIV	GCCGGC	1 cut(s)	9
NlaIII	CATG	4 cut(s)	85, 292, 665, 885
NlaIV	GGNNCC	2 cut(s)	315, 423
NmeAIII	GCCGAG	1 cut(s)	9
NspI	RCATGY	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	85
PdiI	GCCGGC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	338, 741
PkrI	GCNGC	2 cut(s)	80, 287
PleI	GAGTC	3 cut(s)	28, 431, 641
PpsI	GAGTC	3 cut(s)	28, 431, 641
Psp6I	CCWGG	3 cut(s)	784, 801, 818
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	3 cut(s)	784, 801, 818
PspN4I	GGNNCC	2 cut(s)	315, 423
PspPI	GGNCC	3 cut(s)	323, 683, 799
PsuI	RGATCY	2 cut(s)	313, 445
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
RseI	CAYNNNNRTG	2 cut(s)	101, 597
SaqAI	TTAA	2 cut(s)	398, 735
SatI	GCNGC	2 cut(s)	79, 286
Sau3AI	GATC	5 cut(s)	210, 313, 427, 445, 775
Sau96I	GGNCC	3 cut(s)	323, 683, 799
SchI	GAGTC	3 cut(s)	29, 431, 641
ScrFI	CCNGG	3 cut(s)	786, 803, 820
SduI	GDGCHC	1 cut(s)	553
SfaNI	GCATC	2 cut(s)	226, 254
SfuI	TTCGAA	1 cut(s)	275
SinI	GGWCC	1 cut(s)	799
SmiMI	CAYNNNNRTG	2 cut(s)	101, 597
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SphI	GCATGC	1 cut(s)	85
Sse9I	AATT	4 cut(s)	138, 268, 611, 887
SsiI	CCGC	3 cut(s)	162, 179, 372
SspMI	CTAG	1 cut(s)	449
StyD4I	CCNGG	3 cut(s)	784, 801, 818
TaqI	TCGA	2 cut(s)	213, 275
TasI	AATT	4 cut(s)	138, 268, 611, 887
TatI	WGTACW	1 cut(s)	700
TfiI	GAWTC	2 cut(s)	338, 741
Tru1I	TTAA	2 cut(s)	398, 735
Tru9I	TTAA	2 cut(s)	398, 735
TseI	GCWGC	2 cut(s)	78, 285
TspDTI	ATGAA	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	799
XceI	RCATGY	1 cut(s)	85
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.