FvH4_5g20480

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003640
Physical Location & Seq
Reverse (-)
12125546 .. 12129823
4278 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20480.t1

Sequence Viewer

Length: 1023 bp
ATGGGTCGGAGGCAGAGCGACCCAGAAGCCACCCTTTGCTCAACTCCCGTCCTCTTCTTGGTGGGTCTCTTCTCCTGTTCTCTGGTCTACGCTTTCCTCTCTGTGGTGCTTAAACCCAATGCGCCCTCCTCGTTTTCGGAGATGGAGTCATTAGCAATGGTGGAGCAGAGTAAGGTGGAGAGTGATGGAGGGTGTTGCAGAGGGATTGAGAATTTGGAGCTGTGGGGTGCTGCTGTGAAGTGGGGCTCAGAGTTTAAGTTCAATTCTTCAGAGGAGTGTTGTCAGGCTTGTAAGGGGATGTGTAGTGGGACTGATGGGCCTTGTTTGTGTGATAGTTGGGTCTTCTGTGGGAATAGGGAGGCTTGTGGCTCTAAATTTGGTGAGTGCTGGTTGAAGAAACAGAAGGATACATTGTCCCCTGAGCGCCAGGAAAAAGGGGAGACAGTTAGTTGGACATCTGGAATCATCTTTGGGAGAGGAGAGGGCATTGTTGGCTTGGAAACACCATATGGAACTCTACATATAAAACTTCTCCCCGACTGTGCCCCTCATTCTGTGGCCTACATTCTTGAGTTGTTGCCATTGCGTCATTGTGCCGGCTGCCAATTCTATCGTGCAGAGAGTCGTGGGGGATCATGGGACTCGGAGGGAAACCACATAAAAGATGCTTCTTTCGGTCCTCCTTTTGCACTGGTTCAGGGAACACTGGAAGCCCAAGGAGCCACATTCAAGGAGCTTCCAACTGAATTTTGCCCAACCTTAAAAAGGGGTTCGGTAGCATGGATTGGCTCTGGTCCCGAATTTTTCATAAGCCTAGCAAACCATGAGGAATGGAAAAAAGAATACACCGTCTTTGCTTCTGTTCTCCCAGAAGACATGCACATCGCTGAGACAATTGCTCAGCTTCCCACCACCGCTAATGTTTGGAACAACATCAATGTGTCTGTGTTGGAGAAGCCTGTTCCGTTGATGTTGCGCAGAATCAAGACAAGCCATGGAGAACTCACCACAAACGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4 Pro_isomerase

Protein Analysis

341

Amino Acids

37.21

Weight (kDa)

5.4

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 164 - 316 8.6e-10 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 977
AccI GTMKAC 1 cut(s) 87
AciI CCGC 1 cut(s) 915
AclWI GGATC 1 cut(s) 640
AcsI RAATTY 4 cut(s) 211, 374, 746, 800
AcuI CTGAAG 1 cut(s) 252
AfiI CCNNNNNNNGG 3 cut(s) 58, 103, 765
AgsI TTSAA 3 cut(s) 262, 394, 730
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 3 cut(s) 220, 736, 904
AluI AGCT 3 cut(s) 220, 736, 904
Alw26I GTCTC 3 cut(s) 71, 434, 884
AlwI GGATC 1 cut(s) 640
AoxI GGCC 2 cut(s) 317, 558
ApeKI GCWGC 2 cut(s) 230, 600
ApoI RAATTY 4 cut(s) 211, 374, 746, 800
AspLEI GCGC 3 cut(s) 124, 426, 978
AspS9I GGNCC 3 cut(s) 317, 677, 794
AsuHPI GGTGA 2 cut(s) 392, 997
AvaII GGWCC 2 cut(s) 677, 794
BaeGI GKGCMC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 248
BbsI GAAGAC 2 cut(s) 334, 879
BbvI GCAGC 2 cut(s) 217, 587
BccI CCATC 3 cut(s) 136, 179, 308
BciT130I CCWGG 1 cut(s) 428
BciVI GTATCC 1 cut(s) 400
BcoDI GTCTC 3 cut(s) 71, 434, 884
BfaI CTAG 1 cut(s) 815
BfoI RGCGCY 1 cut(s) 427
BfuI GTATCC 1 cut(s) 400
BisI GCNGC 2 cut(s) 231, 601
BlpI GCTNAGC 1 cut(s) 900
BlsI GCNGC 2 cut(s) 232, 602
Bme1390I CCNGG 1 cut(s) 428
Bme18I GGWCC 2 cut(s) 677, 794
BmgT120I GGNCC 3 cut(s) 317, 677, 794
BmiI GGNNCC 2 cut(s) 721, 796
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 655
BpiI GAAGAC 2 cut(s) 334, 879
Bpu10I CCTNAGC 1 cut(s) 420
Bpu1102I GCTNAGC 1 cut(s) 900
BpuEI CTTGAG 1 cut(s) 590
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 715, 994
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 103, 765
Bse118I RCCGGY 1 cut(s) 596
Bse1I ACTGG 2 cut(s) 696, 711
Bse3DI GCAATG 2 cut(s) 162, 581
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 715, 994
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 3 cut(s) 58, 103, 765
BseMI GCAATG 2 cut(s) 162, 581
BseMII CTCAG 4 cut(s) 261, 411, 879, 914
BseNI ACTGG 2 cut(s) 696, 711
BseRI GAGGAG 3 cut(s) 118, 287, 492
BseSI GKGCMC 1 cut(s) 547
BseXI GCAGC 2 cut(s) 217, 587
BsgI GTGCAG 1 cut(s) 636
BshFI GGCC 2 cut(s) 319, 560
BsiSI CCGG 1 cut(s) 597
BslFI GGGAC 4 cut(s) 322, 400, 653, 780
BslI CCNNNNNNNGG 3 cut(s) 58, 103, 765
BsmAI GTCTC 3 cut(s) 71, 434, 884
BsmFI GGGAC 4 cut(s) 322, 400, 653, 780
BsnI GGCC 2 cut(s) 319, 560
Bso31I GGTCTC 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 248, 547
Bsp143I GATC 1 cut(s) 632
Bsp1720I GCTNAGC 1 cut(s) 900
Bsp19I CCATGG 1 cut(s) 994
BspACI CCGC 1 cut(s) 915
BspANI GGCC 2 cut(s) 319, 560
BspCNI CTCAG 4 cut(s) 260, 412, 880, 913
BspLI GGNNCC 2 cut(s) 721, 796
BspPI GGATC 1 cut(s) 640
BspTNI GGTCTC 1 cut(s) 71
BsrDI GCAATG 2 cut(s) 162, 581
BsrFI RCCGGY 1 cut(s) 596
BsrI ACTGG 2 cut(s) 696, 711
BssAI RCCGGY 1 cut(s) 596
BssECI CCNNGG 2 cut(s) 715, 994
BssMI GATC 1 cut(s) 632
BssT1I CCWWGG 2 cut(s) 715, 994
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 445, 542, 850
Bst6I CTCTTC 2 cut(s) 59, 74
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 4 cut(s) 247, 420, 888, 900
BstDSI CCRYGG 1 cut(s) 994
BstENI CCTNNNNNAGG 1 cut(s) 763
BstF5I GGATG 1 cut(s) 303
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 3 cut(s) 124, 426, 978
BstKTI GATC 1 cut(s) 635
BstMAI GTCTC 3 cut(s) 71, 434, 884
BstMBI GATC 1 cut(s) 632
BstMWI GCNNNNNNNGC 2 cut(s) 492, 719
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 1 cut(s) 880
BstSCI CCNGG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 547
BstV1I GCAGC 2 cut(s) 217, 587
BstV2I GAAGAC 2 cut(s) 334, 879
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 2 cut(s) 319, 560
BtgI CCRYGG 1 cut(s) 994
BtgZI GCGATG 1 cut(s) 868
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 689, 704
Cac8I GCNNGC 1 cut(s) 598
CfoI GCGC 3 cut(s) 124, 426, 978
Cfr10I RCCGGY 1 cut(s) 596
Cfr13I GGNCC 3 cut(s) 317, 677, 794
CseI GACGC 1 cut(s) 575
CviAII CATG 5 cut(s) 636, 780, 824, 877, 995
DdeI CTNAG 4 cut(s) 247, 420, 888, 900
DpnI GATC 1 cut(s) 634
DpnII GATC 1 cut(s) 632
Eam1104I CTCTTC 2 cut(s) 59, 74
EarI CTCTTC 2 cut(s) 59, 74
Eco130I CCWWGG 2 cut(s) 715, 994
Eco24I GRGCYC 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 2 cut(s) 677, 794
Eco57I CTGAAG 1 cut(s) 252
EcoNI CCTNNNNNAGG 1 cut(s) 763
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 2 cut(s) 715, 994
EcoT38I GRGCYC 1 cut(s) 248
ErhI CCWWGG 2 cut(s) 715, 994
FaeI CATG 5 cut(s) 639, 783, 827, 880, 998
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FaqI GGGAC 4 cut(s) 322, 400, 653, 780
FatI CATG 5 cut(s) 635, 779, 823, 876, 994
FauNDI CATATG 1 cut(s) 508
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 231, 601
FokI GGATG 1 cut(s) 310
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 231, 601
FspBI CTAG 1 cut(s) 815
FspI TGCGCA 1 cut(s) 977
GlaI GCGC 3 cut(s) 123, 425, 977
GluI GCNGC 2 cut(s) 231, 601
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 2 cut(s) 319, 560
HapII CCGG 1 cut(s) 597
HgaI GACGC 1 cut(s) 575
HhaI GCGC 3 cut(s) 124, 426, 978
Hin1II CATG 5 cut(s) 639, 783, 827, 880, 998
Hin6I GCGC 3 cut(s) 122, 424, 976
HinP1I GCGC 3 cut(s) 122, 424, 976
HinfI GANTC 5 cut(s) 146, 462, 622, 641, 981
HpaII CCGG 1 cut(s) 597
HphI GGTGA 2 cut(s) 392, 997
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 5 cut(s) 9, 139, 250, 271, 646
Hpy188III TCNNGA 4 cut(s) 459, 569, 797, 985
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 3 cut(s) 445, 542, 850
HpyCH4V TGCA 4 cut(s) 198, 617, 689, 880
HpyF10VI GCNNNNNNNGC 2 cut(s) 492, 719
HpyF3I CTNAG 4 cut(s) 247, 420, 888, 900
Hsp92II CATG 5 cut(s) 639, 783, 827, 880, 998
HspAI GCGC 3 cut(s) 122, 424, 976
KroI GCCGGC 1 cut(s) 596
KroNI GCCGGC 1 cut(s) 598
Kzo9I GATC 1 cut(s) 632
LmnI GCTCC 4 cut(s) 163, 217, 719, 733
Lsp1109I GCAGC 2 cut(s) 217, 587
LweI GCATC 1 cut(s) 655
MaeI CTAG 1 cut(s) 815
MalI GATC 1 cut(s) 634
MboI GATC 1 cut(s) 632
MboII GAAGA 6 cut(s) 46, 61, 258, 334, 406, 884
MfeI CAATTG 1 cut(s) 894
MhlI GDGCHC 2 cut(s) 248, 547
MluCI AATT 7 cut(s) 211, 262, 374, 605, 746, 800, 894
MlyI GAGTC 3 cut(s) 155, 631, 635
MmeI TCCRAC 3 cut(s) 431, 764, 930
MroNI GCCGGC 1 cut(s) 596
MseI TTAA 3 cut(s) 111, 255, 761
MslI CAYNNNNRTG 1 cut(s) 938
MspI CCGG 1 cut(s) 597
MspR9I CCNGG 1 cut(s) 428
MunI CAATTG 1 cut(s) 894
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 492, 719
NaeI GCCGGC 1 cut(s) 598
NcoI CCATGG 1 cut(s) 994
NdeI CATATG 1 cut(s) 508
NdeII GATC 1 cut(s) 632
NgoMIV GCCGGC 1 cut(s) 596
NlaIII CATG 5 cut(s) 639, 783, 827, 880, 998
NlaIV GGNNCC 2 cut(s) 721, 796
NsbI TGCGCA 1 cut(s) 977
NspI RCATGY 1 cut(s) 880
PdiI GCCGGC 1 cut(s) 598
PfeI GAWTC 2 cut(s) 462, 981
PkrI GCNGC 2 cut(s) 232, 602
PleI GAGTC 3 cut(s) 154, 630, 635
PpsI GAGTC 3 cut(s) 154, 630, 635
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 721, 796
PspPI GGNCC 3 cut(s) 317, 677, 794
RseI CAYNNNNRTG 1 cut(s) 938
SaqAI TTAA 3 cut(s) 111, 255, 761
SatI GCNGC 2 cut(s) 231, 601
Sau3AI GATC 1 cut(s) 632
Sau96I GGNCC 3 cut(s) 317, 677, 794
SchI GAGTC 3 cut(s) 155, 631, 635
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 2 cut(s) 248, 547
SetI ASST 5 cut(s) 177, 222, 738, 761, 906
SfaNI GCATC 1 cut(s) 655
SinI GGWCC 2 cut(s) 677, 794
SmiMI CAYNNNNRTG 1 cut(s) 938
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 7 cut(s) 211, 262, 374, 605, 746, 800, 894
SsiI CCGC 1 cut(s) 915
SspMI CTAG 1 cut(s) 815
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 2 cut(s) 715, 994
TaaI ACNGT 3 cut(s) 445, 542, 850
TaqII GACCGA 1 cut(s) 665
TasI AATT 7 cut(s) 211, 262, 374, 605, 746, 800, 894
TfiI GAWTC 2 cut(s) 462, 981
Tru1I TTAA 3 cut(s) 111, 255, 761
Tru9I TTAA 3 cut(s) 111, 255, 761
TscAI CASTG 2 cut(s) 696, 711
TseI GCWGC 2 cut(s) 230, 600
TspDTI ATGAA 1 cut(s) 796
TspGWI ACGGA 1 cut(s) 954
TspRI CASTG 2 cut(s) 696, 711
VpaK11BI GGWCC 2 cut(s) 677, 794
XagI CCTNNNNNAGG 1 cut(s) 763
XapI RAATTY 4 cut(s) 211, 374, 746, 800
XceI RCATGY 1 cut(s) 880
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.