Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010641

Physical Location & Seq

Genomic Coordinates Reverse (-)

22305004 .. 22307855

Gene Structure 2852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG238500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAGGAGAGGTATGAGCCAATGAAGGATCTTGGGTCTGGCAACTTTGGGGTGGCGAGGCTGGTCAGAGACAAGAAGACCAAGGAGCTTGTGGCTGTTAAGTACATAGAGAGAGGGAAGAAGTCTGCTATTTTGCACTCGCAACCAAAATCAACTGTCGGAACGCCTGCATACATTGCTCCGGAGGTTCTGTCACGGAAGGAATATGATGGAAAGATTGCAGATGTTTGGTCCTGTGGTGTGACACTATATGTGATGTTGGTTGGAGCATATCCTTTTGAGGATCCTGAAGATCCTCGAAATTTTCGTAAGACCATTGAGAGAATTATGAGTGTCCAGTACACCATACCCGACTATGTACGTATTTCAGCAGACTGCAAGCACCTACTTTCTCGTGTTTTTGTTGCCAACCCTTCTAAGAGGATGAGTCTTCCTGAGATAAAACAGCACCCCTGGTTTCTGAAAAATTTGGCGAGAGAGCTAATTGAGGTTGAGAAAAAAAGCTTTGCAGAAGTGGAACGTGACCACCCAACACAGAGCATTGAAGAAATAAATAGGATCATACAAGATGCAAGGACACCAGGGGAAGGTTCCAAAGGAGTTGGCCAAGCTGTTGCAGGAGCAGGACCATCCGACTCTGATGATGTAGATATGGACTCAGAAGTTGATCTCAGTGGTGACTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

229

Amino Acids

25.68

Weight (kDa)

5.7

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	47 - 153	3.2e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	55 - 149	4.5e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23030
fragaria_vesca	FvH4_5g20490 FvH4_5g20490 FvH4_5g20490
malus_domestica	MD04G1054400.v1.1 MD06G1046300.v1.1
prunus_persica	Prupe.5G054500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0205831
rosa_laevigata	RLG00000003352
rosa_multiflora	Rmu_sc0000076.1_g000048 Rmu_sc0008518.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251960
rosa_rugosa	Rorug07G0093200 Rorug07G0093200 Rorug07G0093300
rosa_samantha	Rh7AG224800 Rh7BG220000 Rh7CG238500 Rh7DG231600
rosa_wichuraiana	Rw7G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	181
AclWI	GGATC	5 cut(s)	36, 278, 287, 291, 566
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	2 cut(s)	301, 466
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	3 cut(s)	104, 341, 360
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgsI	TTSAA	1 cut(s)	545
AjnI	CCWGG	2 cut(s)	452, 580
AluBI	AGCT	4 cut(s)	88, 481, 504, 611
AluI	AGCT	4 cut(s)	88, 481, 504, 611
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	5 cut(s)	36, 278, 287, 291, 566
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	1 cut(s)	604
ApoI	RAATTY	2 cut(s)	301, 466
AspS9I	GGNCC	2 cut(s)	231, 626
AsuHPI	GGTGA	1 cut(s)	689
AvaII	GGWCC	2 cut(s)	231, 626
BalI	TGGCCA	1 cut(s)	606
BamHI	GGATCC	1 cut(s)	283
BauI	CACGAG	1 cut(s)	393
BbsI	GAAGAC	2 cut(s)	83, 422
BccI	CCATC	2 cut(s)	203, 637
BciT130I	CCWGG	2 cut(s)	454, 582
BcoDI	GTCTC	1 cut(s)	63
Bme1390I	CCNGG	2 cut(s)	454, 582
Bme18I	GGWCC	2 cut(s)	231, 626
BmgT120I	GGNCC	2 cut(s)	231, 626
BmiI	GGNNCC	2 cut(s)	285, 592
BmrFI	CCNGG	2 cut(s)	454, 582
BmsI	GCATC	1 cut(s)	559
BpiI	GAAGAC	2 cut(s)	83, 422
BsaAI	YACGTR	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	81, 452, 581
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse1I	ACTGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	2 cut(s)	454, 582
BseDI	CCNNGG	3 cut(s)	81, 452, 581
BseGI	GGATG	2 cut(s)	429, 629
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	3 cut(s)	426, 672, 685
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	606
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	28, 283, 292, 558, 667
BspANI	GGCC	1 cut(s)	606
BspCNI	CTCAG	3 cut(s)	427, 671, 684
BspEI	TCCGGA	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	285, 592
BspPI	GGATC	5 cut(s)	36, 278, 287, 291, 566
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	3 cut(s)	81, 452, 581
BssMI	GATC	5 cut(s)	28, 283, 292, 558, 667
BssSI	CACGAG	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	454, 582
Bst4CI	ACNGT	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	168, 380
BstDEI	CTNAG	4 cut(s)	417, 435, 658, 671
BstF5I	GGATG	2 cut(s)	429, 629
BstKTI	GATC	5 cut(s)	31, 286, 295, 561, 670
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	5 cut(s)	28, 283, 292, 558, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	2 cut(s)	454, 582
BstSCI	CCNGG	2 cut(s)	452, 580
BstSNI	TACGTA	1 cut(s)	362
BstV2I	GAAGAC	2 cut(s)	83, 422
BstX2I	RGATCY	3 cut(s)	28, 283, 292
BstYI	RGATCY	3 cut(s)	28, 283, 292
BsuRI	GGCC	1 cut(s)	606
BtsCI	GGATG	2 cut(s)	429, 629
BtsIMutI	CAGTG	1 cut(s)	679
Cac8I	GCNNGC	2 cut(s)	168, 380
Cfr13I	GGNCC	2 cut(s)	231, 626
Csp6I	GTAC	3 cut(s)	103, 340, 359
CviJI	RGCY	8 cut(s)	19, 61, 88, 95, 481, 504, 606, 611
CviKI_1	RGCY	8 cut(s)	19, 61, 88, 95, 481, 504, 606, 611
CviQI	GTAC	3 cut(s)	103, 340, 359
DdeI	CTNAG	4 cut(s)	417, 435, 658, 671
DpnI	GATC	5 cut(s)	30, 285, 294, 560, 669
DpnII	GATC	5 cut(s)	28, 283, 292, 558, 667
EaeI	YGGCCR	1 cut(s)	604
Eco105I	TACGTA	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	231, 626
Eco57I	CTGAAG	1 cut(s)	309
EcoRII	CCWGG	2 cut(s)	452, 580
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FokI	GGATG	2 cut(s)	436, 616
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	1 cut(s)	182
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	3 cut(s)	427, 635, 656
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	6 cut(s)	68, 161, 462, 634, 640, 661
Hpy188III	TCNNGA	3 cut(s)	182, 287, 434
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	4 cut(s)	19, 193, 423, 581
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	2 cut(s)	361, 520
HpyCH4V	TGCA	7 cut(s)	136, 170, 221, 378, 509, 572, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	4 cut(s)	417, 435, 658, 671
HpySE526I	ACGT	2 cut(s)	361, 520
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	5 cut(s)	28, 283, 292, 558, 667
LmnI	GCTCC	4 cut(s)	85, 184, 266, 620
LweI	GCATC	1 cut(s)	559
MaeII	ACGT	2 cut(s)	361, 520
MaeIII	GTNAC	4 cut(s)	192, 241, 521, 677
MalI	GATC	5 cut(s)	30, 285, 294, 560, 669
MboI	GATC	5 cut(s)	28, 283, 292, 558, 667
MboII	GAAGA	5 cut(s)	88, 130, 302, 422, 557
MflI	RGATCY	3 cut(s)	28, 283, 292
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	4 cut(s)	301, 324, 466, 483
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	3 cut(s)	436, 629, 650
MmeI	TCCRAC	3 cut(s)	139, 244, 657
MnlI	CCTC	8 cut(s)	3, 51, 107, 178, 274, 306, 414, 481
Mox20I	TGGCCA	1 cut(s)	606
MroI	TCCGGA	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	606
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	454, 582
MvaI	CCWGG	2 cut(s)	454, 582
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	5 cut(s)	28, 283, 292, 558, 667
NlaIV	GGNNCC	2 cut(s)	285, 592
NmuCI	GTSAC	4 cut(s)	192, 241, 521, 677
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PleI	GAGTC	3 cut(s)	435, 629, 650
PpsI	GAGTC	3 cut(s)	435, 629, 650
Ppu21I	YACGTR	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	452, 580
PspGI	CCWGG	2 cut(s)	452, 580
PspN4I	GGNNCC	2 cut(s)	285, 592
PspPI	GGNCC	2 cut(s)	231, 626
PsuI	RGATCY	3 cut(s)	28, 283, 292
RsaI	GTAC	3 cut(s)	104, 341, 360
RsaNI	GTAC	3 cut(s)	103, 340, 359
SaqAI	TTAA	1 cut(s)	99
Sau3AI	GATC	5 cut(s)	28, 283, 292, 558, 667
Sau96I	GGNCC	2 cut(s)	231, 626
SchI	GAGTC	3 cut(s)	436, 629, 650
ScrFI	CCNGG	2 cut(s)	454, 582
SfaNI	GCATC	1 cut(s)	559
SinI	GGWCC	2 cut(s)	231, 626
SnaBI	TACGTA	1 cut(s)	362
Sse9I	AATT	4 cut(s)	301, 324, 466, 483
StyD4I	CCNGG	2 cut(s)	452, 580
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	2 cut(s)	364, 523
TaqI	TCGA	1 cut(s)	298
TasI	AATT	4 cut(s)	301, 324, 466, 483
TatI	WGTACW	2 cut(s)	102, 339
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	4 cut(s)	192, 241, 521, 677
Tsp45I	GTSAC	4 cut(s)	192, 241, 521, 677
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	679
VpaK11BI	GGWCC	2 cut(s)	231, 626
XapI	RAATTY	2 cut(s)	301, 466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.