Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010641

Physical Location & Seq

Genomic Coordinates Reverse (-)

18892227 .. 18895024

Gene Structure 2798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG220000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAGGAGAGGTATGAGCCAATGAAGGATCTTGGGTCTGGCAACTTTGGAGTGGCGAGGCTGGTCAGAGACAAGAAGACCAAGGAGCTTGTGGCTGTTAAGTACATAGAGAGAGGGAAGAAGTCTGCTATTTTGCACTCGCAACCAAAATCAACTGTCGGAACGCCTGCATACATTGCTCCGGAGGTTCTGTCACGGAAGGAATATGATGGAAAGAGGATGAGTCTTCCTGAGATAAAACAGCACCCCTGGTTTCTGAAAAATTTGGCGAGAGAGCTAATTGAGGTTGAGAAAAAAAGCTTTGCAGAAGTCGAACGTGACCACCCAACACAGAGCATTGAAGAAATAAATAGGATCATACAAGATGCAAGGACACCAGGGGAAGGTTCCAAAGGAGTTGGCCAAGCTGTTGCAGGAGCAGGACCATCCGACTCTGATGATGTAGATTTGGACTCAGAAGTTGATCTCAGTGGTGACTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

161

Amino Acids

17.85

Weight (kDa)

5.51

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23030
fragaria_vesca	FvH4_5g20490 FvH4_5g20490 FvH4_5g20490
malus_domestica	MD04G1054400.v1.1 MD06G1046300.v1.1
prunus_persica	Prupe.5G054500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0205831
rosa_laevigata	RLG00000003352
rosa_multiflora	Rmu_sc0000076.1_g000048 Rmu_sc0008518.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251960
rosa_rugosa	Rorug07G0093200 Rorug07G0093200 Rorug07G0093300
rosa_samantha	Rh7AG224800 Rh7BG220000 Rh7CG238500 Rh7DG231600
rosa_wichuraiana	Rw7G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	181
AclWI	GGATC	2 cut(s)	36, 362
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	262
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	2 cut(s)	248, 376
AluBI	AGCT	4 cut(s)	88, 277, 300, 407
AluI	AGCT	4 cut(s)	88, 277, 300, 407
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	36, 362
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	402
BbsI	GAAGAC	2 cut(s)	83, 218
BccI	CCATC	2 cut(s)	203, 433
BciT130I	CCWGG	2 cut(s)	250, 378
BcoDI	GTCTC	1 cut(s)	63
Bme1390I	CCNGG	2 cut(s)	250, 378
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	2 cut(s)	250, 378
BmsI	GCATC	1 cut(s)	355
BpiI	GAAGAC	2 cut(s)	83, 218
BsaJI	CCNNGG	3 cut(s)	81, 248, 377
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	2 cut(s)	250, 378
BseDI	CCNNGG	3 cut(s)	81, 248, 377
BseGI	GGATG	2 cut(s)	225, 425
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	3 cut(s)	222, 468, 481
BseRI	GAGGAG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	402
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	3 cut(s)	28, 354, 463
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	3 cut(s)	223, 467, 480
BspEI	TCCGGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	388
BspPI	GGATC	2 cut(s)	36, 362
BsrDI	GCAATG	1 cut(s)	174
BssECI	CCNNGG	3 cut(s)	81, 248, 377
BssMI	GATC	3 cut(s)	28, 354, 463
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	250, 378
Bst4CI	ACNGT	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	3 cut(s)	231, 454, 467
BstF5I	GGATG	2 cut(s)	225, 425
BstKTI	GATC	3 cut(s)	31, 357, 466
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	3 cut(s)	28, 354, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	2 cut(s)	250, 378
BstSCI	CCNGG	2 cut(s)	248, 376
BstV2I	GAAGAC	2 cut(s)	83, 218
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	225, 425
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	103
CviJI	RGCY	8 cut(s)	19, 61, 88, 95, 277, 300, 402, 407
CviKI_1	RGCY	8 cut(s)	19, 61, 88, 95, 277, 300, 402, 407
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	3 cut(s)	231, 454, 467
DpnI	GATC	3 cut(s)	30, 356, 465
DpnII	GATC	3 cut(s)	28, 354, 463
EaeI	YGGCCR	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	248, 376
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaiI	YATR	5 cut(s)	15, 107, 172, 207, 359
FokI	GGATG	2 cut(s)	232, 412
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	1 cut(s)	182
HindIII	AAGCTT	1 cut(s)	298
HinfI	GANTC	3 cut(s)	223, 431, 452
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	485
Hpy188I	TCNGA	6 cut(s)	68, 161, 258, 430, 436, 457
Hpy188III	TCNNGA	2 cut(s)	182, 230
HpyAV	CCTTC	3 cut(s)	19, 193, 377
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	136, 170, 305, 368, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	3 cut(s)	231, 454, 467
HpySE526I	ACGT	1 cut(s)	316
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	28, 354, 463
LmnI	GCTCC	3 cut(s)	85, 184, 416
LweI	GCATC	1 cut(s)	355
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	3 cut(s)	192, 317, 473
MalI	GATC	3 cut(s)	30, 356, 465
MboI	GATC	3 cut(s)	28, 354, 463
MboII	GAAGA	4 cut(s)	88, 130, 218, 353
MflI	RGATCY	1 cut(s)	28
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	2 cut(s)	262, 279
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	3 cut(s)	232, 425, 446
MmeI	TCCRAC	2 cut(s)	139, 453
MnlI	CCTC	6 cut(s)	3, 51, 107, 178, 210, 277
Mox20I	TGGCCA	1 cut(s)	402
MroI	TCCGGA	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	2 cut(s)	99, 484
Msp20I	TGGCCA	1 cut(s)	402
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	250, 378
MvaI	CCWGG	2 cut(s)	250, 378
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	3 cut(s)	28, 354, 463
NlaIV	GGNNCC	1 cut(s)	388
NmuCI	GTSAC	3 cut(s)	192, 317, 473
PleI	GAGTC	3 cut(s)	231, 425, 446
PpsI	GAGTC	3 cut(s)	231, 425, 446
Psp6I	CCWGG	2 cut(s)	248, 376
PspGI	CCWGG	2 cut(s)	248, 376
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	2 cut(s)	99, 484
Sau3AI	GATC	3 cut(s)	28, 354, 463
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	3 cut(s)	232, 425, 446
ScrFI	CCNGG	2 cut(s)	250, 378
SetI	ASST	9 cut(s)	14, 90, 189, 279, 288, 302, 319, 388, 409
SfaNI	GCATC	1 cut(s)	355
SinI	GGWCC	1 cut(s)	422
Sse9I	AATT	2 cut(s)	262, 279
StyD4I	CCNGG	2 cut(s)	248, 376
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	312
TasI	AATT	2 cut(s)	262, 279
TatI	WGTACW	1 cut(s)	102
Tru1I	TTAA	2 cut(s)	99, 484
Tru9I	TTAA	2 cut(s)	99, 484
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	3 cut(s)	192, 317, 473
Tsp45I	GTSAC	3 cut(s)	192, 317, 473
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.