Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010641

Physical Location & Seq

Genomic Coordinates Reverse (-)

21096846 .. 21100642

Gene Structure 3797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG224800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAATATGCAGCTGGTGGTGAACTCTTTGAGAGGATATGTAGTGCTGGTAGATTTAGTGAAGATGAGGAAATTTGTCACAGGGATCTGAAACTGGAAAACACACTCTTGGACGGAAGTGCAACACCACGTCTTAAAATTTGTGACTTTGGATACTCCAAGTCTGCTATTTTGCACTCGCAACCAAAATCAACTGTCGGAACGCCTGCATACATTGCTCCGGAGGTTCTGTCACGGAAGGAATATGATGGAAAGATTGCAGATGTTTGGTCCTGTGGTGTGACACTATATGTGATGTTGGTTGGAGCATATCCTTTTGAGGATCCTGAAGATCCTCGAAATTTTCGTAAGACCATTGAGAGAATTATGAGTGTCCAGTACACCATACCCGACTATGTACGTATTTCAGCAGACTGCAAGCACCTACTTTCTCGTGTTTTTGTTGCCAACCCTTCTAAGAGGATGAGTCTTCCTGAGATAAAACAGCACCCCTGGTTTCTGAAAAATTTGGCGAGAGAGCTAATTGAGGTTGAGAAAAAAAGCTTTGCAGAAGTGGAACGTGACCACCCAACACAGAGCATTGAAGAAATAAATAGGATCATACAAGATGCAAGGACACCAGGGGAAGGTTCCAAAGGAGTTGGCCAAGCTGTTGCAGGAGCAGGACCATCCGACTCTGATGATGTAGATATGGACTCAGAAGTTGATCTCAGTGGTGACTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

242

Amino Acids

26.99

Weight (kDa)

4.95

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	8 - 166	3.9e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	11 - 162	4.2e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23030
fragaria_vesca	FvH4_5g20490 FvH4_5g20490 FvH4_5g20490
malus_domestica	MD04G1054400.v1.1 MD06G1046300.v1.1
prunus_persica	Prupe.5G054500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0205831
rosa_laevigata	RLG00000003352
rosa_multiflora	Rmu_sc0000076.1_g000048 Rmu_sc0008518.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251960
rosa_rugosa	Rorug07G0093200 Rorug07G0093200 Rorug07G0093300
rosa_samantha	Rh7AG224800 Rh7BG220000 Rh7CG238500 Rh7DG231600
rosa_wichuraiana	Rw7G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	220
AclWI	GGATC	5 cut(s)	93, 317, 326, 330, 605
AcoI	YGGCCR	1 cut(s)	643
AcsI	RAATTY	4 cut(s)	72, 138, 340, 505
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	2 cut(s)	380, 399
AfiI	CCNNNNNNNGG	1 cut(s)	626
AgsI	TTSAA	1 cut(s)	584
AjiI	CACGTC	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	491, 619
AluBI	AGCT	4 cut(s)	14, 520, 543, 650
AluI	AGCT	4 cut(s)	14, 520, 543, 650
AlwI	GGATC	5 cut(s)	93, 317, 326, 330, 605
Aor13HI	TCCGGA	1 cut(s)	220
AoxI	GGCC	1 cut(s)	643
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	4 cut(s)	72, 138, 340, 505
AspS9I	GGNCC	2 cut(s)	270, 665
AsuHPI	GGTGA	2 cut(s)	32, 728
AvaII	GGWCC	2 cut(s)	270, 665
BalI	TGGCCA	1 cut(s)	645
BamHI	GGATCC	1 cut(s)	322
BauI	CACGAG	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	461
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	242, 676
BciT130I	CCWGG	2 cut(s)	493, 621
BciVI	GTATCC	1 cut(s)	146
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	493, 621
Bme18I	GGWCC	2 cut(s)	270, 665
BmgBI	CACGTC	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	270, 665
BmiI	GGNNCC	2 cut(s)	324, 631
BmrFI	CCNGG	2 cut(s)	493, 621
BmsI	GCATC	1 cut(s)	598
BpiI	GAAGAC	1 cut(s)	461
BsaAI	YACGTR	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	491, 620
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse1I	ACTGG	2 cut(s)	99, 376
Bse3DI	GCAATG	1 cut(s)	213
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	2 cut(s)	493, 621
BseDI	CCNNGG	2 cut(s)	491, 620
BseGI	GGATG	2 cut(s)	468, 668
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	3 cut(s)	465, 711, 724
BseNI	ACTGG	2 cut(s)	99, 376
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	645
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	626
BsnI	GGCC	1 cut(s)	645
Bsp13I	TCCGGA	1 cut(s)	220
Bsp143I	GATC	5 cut(s)	85, 322, 331, 597, 706
BspANI	GGCC	1 cut(s)	645
BspCNI	CTCAG	3 cut(s)	466, 710, 723
BspEI	TCCGGA	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	324, 631
BspPI	GGATC	5 cut(s)	93, 317, 326, 330, 605
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	99, 376
BssECI	CCNNGG	2 cut(s)	491, 620
BssMI	GATC	5 cut(s)	85, 322, 331, 597, 706
BssSI	CACGAG	1 cut(s)	432
Bst2BI	CACGAG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	493, 621
Bst4CI	ACNGT	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	207, 419
BstDEI	CTNAG	4 cut(s)	456, 474, 697, 710
BstF5I	GGATG	2 cut(s)	468, 668
BstKTI	GATC	5 cut(s)	88, 325, 334, 600, 709
BstMBI	GATC	5 cut(s)	85, 322, 331, 597, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	2 cut(s)	493, 621
BstSCI	CCNGG	2 cut(s)	491, 619
BstSNI	TACGTA	1 cut(s)	401
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	3 cut(s)	85, 322, 331
BstYI	RGATCY	3 cut(s)	85, 322, 331
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	645
BtrI	CACGTC	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	468, 668
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	2 cut(s)	207, 419
Cfr13I	GGNCC	2 cut(s)	270, 665
Csp6I	GTAC	2 cut(s)	379, 398
CviJI	RGCY	5 cut(s)	14, 520, 543, 645, 650
CviKI_1	RGCY	5 cut(s)	14, 520, 543, 645, 650
CviQI	GTAC	2 cut(s)	379, 398
DdeI	CTNAG	4 cut(s)	456, 474, 697, 710
DpnI	GATC	5 cut(s)	87, 324, 333, 599, 708
DpnII	GATC	5 cut(s)	85, 322, 331, 597, 706
EaeI	YGGCCR	1 cut(s)	643
Eco105I	TACGTA	1 cut(s)	401
Eco47I	GGWCC	2 cut(s)	270, 665
Eco57I	CTGAAG	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	491, 619
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	2 cut(s)	475, 655
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	645
HapII	CCGG	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	3 cut(s)	466, 674, 695
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	2 cut(s)	32, 728
Hpy166II	GTNNAC	2 cut(s)	23, 381
Hpy188I	TCNGA	6 cut(s)	90, 200, 501, 673, 679, 700
Hpy188III	TCNNGA	3 cut(s)	221, 326, 473
Hpy8I	GTNNAC	2 cut(s)	23, 381
HpyAV	CCTTC	3 cut(s)	232, 462, 620
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	3 cut(s)	130, 400, 559
HpyCH4V	TGCA	9 cut(s)	11, 122, 175, 209, 260, 417, 548, 611, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	4 cut(s)	456, 474, 697, 710
HpySE526I	ACGT	3 cut(s)	130, 400, 559
Kpn2I	TCCGGA	1 cut(s)	220
Kzo9I	GATC	5 cut(s)	85, 322, 331, 597, 706
LmnI	GCTCC	3 cut(s)	223, 305, 659
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	598
MaeII	ACGT	3 cut(s)	130, 400, 559
MaeIII	GTNAC	6 cut(s)	77, 143, 231, 280, 560, 716
MalI	GATC	5 cut(s)	87, 324, 333, 599, 708
MboI	GATC	5 cut(s)	85, 322, 331, 597, 706
MboII	GAAGA	4 cut(s)	74, 341, 461, 596
MflI	RGATCY	3 cut(s)	85, 322, 331
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	6 cut(s)	72, 138, 340, 363, 505, 522
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	3 cut(s)	475, 668, 689
MmeI	TCCRAC	3 cut(s)	178, 283, 696
MnlI	CCTC	7 cut(s)	27, 61, 217, 313, 345, 453, 520
Mox20I	TGGCCA	1 cut(s)	645
MroI	TCCGGA	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	493, 621
MvaI	CCWGG	2 cut(s)	493, 621
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	5 cut(s)	85, 322, 331, 597, 706
NlaIV	GGNNCC	2 cut(s)	324, 631
NmuCI	GTSAC	6 cut(s)	77, 143, 231, 280, 560, 716
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	3 cut(s)	474, 668, 689
PpsI	GAGTC	3 cut(s)	474, 668, 689
Ppu21I	YACGTR	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	491, 619
PspGI	CCWGG	2 cut(s)	491, 619
PspN4I	GGNNCC	2 cut(s)	324, 631
PspPI	GGNCC	2 cut(s)	270, 665
PsuI	RGATCY	3 cut(s)	85, 322, 331
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	2 cut(s)	380, 399
RsaNI	GTAC	2 cut(s)	379, 398
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	5 cut(s)	85, 322, 331, 597, 706
Sau96I	GGNCC	2 cut(s)	270, 665
SchI	GAGTC	3 cut(s)	475, 668, 689
ScrFI	CCNGG	2 cut(s)	493, 621
SfaNI	GCATC	1 cut(s)	598
SinI	GGWCC	2 cut(s)	270, 665
SnaBI	TACGTA	1 cut(s)	401
Sse9I	AATT	6 cut(s)	72, 138, 340, 363, 505, 522
StyD4I	CCNGG	2 cut(s)	491, 619
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	3 cut(s)	133, 403, 562
TaqI	TCGA	1 cut(s)	337
TasI	AATT	6 cut(s)	72, 138, 340, 363, 505, 522
TatI	WGTACW	1 cut(s)	378
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	6 cut(s)	77, 143, 231, 280, 560, 716
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	6 cut(s)	77, 143, 231, 280, 560, 716
TspGWI	ACGGA	2 cut(s)	129, 250
TspRI	CASTG	1 cut(s)	718
VpaK11BI	GGWCC	2 cut(s)	270, 665
XapI	RAATTY	4 cut(s)	72, 138, 340, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.