Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010641

Physical Location & Seq

Genomic Coordinates Forward (+)

47518325 .. 47521106

Gene Structure 2782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003352

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGAGGAGAGGTATGAGCCAATGAAGGATCTTGGGTCTGGCAACTTTGGGGTGGCGAGGCTGGTCAGAGACAAGAAGACCAAGGAGCTTGTGGCTGTTAAGTACATAGAGAGAGGGAAGAAGATAAGTCGTAGTTTTTGTGTGAGATTAGTTTTAGCTGGAAAAGCAGATCTTCATTCTCAAATTTGCACCAACCAATCGTGTTATTGTGGTGTTATGGAAATTTGTCACAGGGATCTGAAACTGGAAAACACACTCTTGGACGGAAGTGCAACACCACGTCTTAAAATTTGTGACTTTGGATACTCCAAGTCTGCTATTTTGCACTCGCAACCAAAATCAACTGTTGGAACGCCTGCATACATTGCTCCGGAGGTTCTGTCTCGGAAGGAATATGATGGAAAGATTGCAGATGTTTGGTCCTGTGGTGTGACACTATATGTGATGTTGGTTGGAGCATATCCTTTTGAGGATCCTGAAGATCCTCGAAATTTTCGTAAGACCATTGAGAGAATTATGAGTGTCCAGTACTCCATACCCGACTATGTACGTATTTCAGCAGACTGCAAGCACCTACTTTCTCGTGTTTTTGTTGCCAACCCTTCCAAGAGGATCAGTCTTCCTGAGATAAAACAGCACCCCTGGTTTCTGAAAAATTTGGCGAGAGAGCTAATTGAGGTTGAGAAAAAAAGCTTTGCAGAAGTGGAACTTGACCACCCAACACAGAGCATTGAAGAAATAAATAGGATCATACAAGATGCAAGGACACCAGGGGAAGGTTCCAAAGGAGTTGGCCAAGCTGTTGCAGGAGCAGGACCATCCGACTCTGATGATGTAGATTTGGACTCAGAAGTTGATCTGAGTGGTGACTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

293

Amino Acids

32.59

Weight (kDa)

6.13

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	69 - 216	1.2e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	69 - 212	7.7e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23030
fragaria_vesca	FvH4_5g20490 FvH4_5g20490 FvH4_5g20490
malus_domestica	MD04G1054400.v1.1 MD06G1046300.v1.1
prunus_persica	Prupe.5G054500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0205831
rosa_laevigata	RLG00000003352
rosa_multiflora	Rmu_sc0000076.1_g000048 Rmu_sc0008518.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251960
rosa_rugosa	Rorug07G0093200 Rorug07G0093200 Rorug07G0093300
rosa_samantha	Rh7AG224800 Rh7BG220000 Rh7CG238500 Rh7DG231600
rosa_wichuraiana	Rw7G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	370
AclWI	GGATC	7 cut(s)	36, 243, 467, 476, 480, 620, 755
AcoI	YGGCCR	1 cut(s)	793
AcsI	RAATTY	5 cut(s)	183, 222, 288, 490, 655
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	3 cut(s)	104, 530, 549
AfiI	CCNNNNNNNGG	1 cut(s)	776
AgsI	TTSAA	1 cut(s)	734
AjiI	CACGTC	1 cut(s)	281
AjnI	CCWGG	2 cut(s)	641, 769
AluBI	AGCT	5 cut(s)	88, 158, 670, 693, 800
AluI	AGCT	5 cut(s)	88, 158, 670, 693, 800
Alw26I	GTCTC	2 cut(s)	63, 387
AlwI	GGATC	7 cut(s)	36, 243, 467, 476, 480, 620, 755
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	1 cut(s)	793
ApoI	RAATTY	5 cut(s)	183, 222, 288, 490, 655
AspS9I	GGNCC	2 cut(s)	420, 815
AsuHPI	GGTGA	1 cut(s)	878
AvaII	GGWCC	2 cut(s)	420, 815
BalI	TGGCCA	1 cut(s)	795
BamHI	GGATCC	1 cut(s)	472
BauI	CACGAG	1 cut(s)	582
BbsI	GAAGAC	2 cut(s)	83, 611
BccI	CCATC	2 cut(s)	392, 826
BciT130I	CCWGG	2 cut(s)	643, 771
BciVI	GTATCC	1 cut(s)	296
BcoDI	GTCTC	2 cut(s)	63, 387
BfuI	GTATCC	1 cut(s)	296
BglII	AGATCT	1 cut(s)	169
BmcAI	AGTACT	1 cut(s)	530
Bme1390I	CCNGG	2 cut(s)	643, 771
Bme18I	GGWCC	2 cut(s)	420, 815
BmgBI	CACGTC	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	420, 815
BmiI	GGNNCC	2 cut(s)	474, 781
BmrFI	CCNGG	2 cut(s)	643, 771
BmsI	GCATC	1 cut(s)	748
BpiI	GAAGAC	2 cut(s)	83, 611
BsaAI	YACGTR	1 cut(s)	551
BsaJI	CCNNGG	3 cut(s)	81, 641, 770
BsaWI	WCCGGW	1 cut(s)	370
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	776
Bse1I	ACTGG	2 cut(s)	249, 526
Bse3DI	GCAATG	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	370
BseBI	CCWGG	2 cut(s)	643, 771
BseDI	CCNNGG	3 cut(s)	81, 641, 770
BseGI	GGATG	1 cut(s)	818
BseLI	CCNNNNNNNGG	1 cut(s)	776
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	3 cut(s)	615, 851, 861
BseNI	ACTGG	2 cut(s)	249, 526
BseRI	GAGGAG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	795
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	776
BsmAI	GTCTC	2 cut(s)	63, 387
BsnI	GGCC	1 cut(s)	795
Bsp13I	TCCGGA	1 cut(s)	370
Bsp143I	GATC	8 cut(s)	28, 169, 235, 472, 481, 612, 747, 856
BspANI	GGCC	1 cut(s)	795
BspCNI	CTCAG	3 cut(s)	616, 852, 860
BspEI	TCCGGA	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	474, 781
BspPI	GGATC	7 cut(s)	36, 243, 467, 476, 480, 620, 755
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	249, 526
BssECI	CCNNGG	3 cut(s)	81, 641, 770
BssMI	GATC	8 cut(s)	28, 169, 235, 472, 481, 612, 747, 856
BssSI	CACGAG	1 cut(s)	582
BssT1I	CCWWGG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	643, 771
Bst4CI	ACNGT	1 cut(s)	346
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	357, 569
BstDEI	CTNAG	3 cut(s)	624, 847, 860
BstF5I	GGATG	1 cut(s)	818
BstKTI	GATC	8 cut(s)	31, 172, 238, 475, 484, 615, 750, 859
BstMAI	GTCTC	2 cut(s)	63, 387
BstMBI	GATC	8 cut(s)	28, 169, 235, 472, 481, 612, 747, 856
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 365
BstNI	CCWGG	2 cut(s)	643, 771
BstSCI	CCNGG	2 cut(s)	641, 769
BstSNI	TACGTA	1 cut(s)	551
BstV2I	GAAGAC	2 cut(s)	83, 611
BstX2I	RGATCY	5 cut(s)	28, 169, 235, 472, 481
BstYI	RGATCY	5 cut(s)	28, 169, 235, 472, 481
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	795
BtrI	CACGTC	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	818
Cac8I	GCNNGC	2 cut(s)	357, 569
Cfr13I	GGNCC	2 cut(s)	420, 815
Csp6I	GTAC	3 cut(s)	103, 529, 548
CviJI	RGCY	9 cut(s)	19, 61, 88, 95, 158, 670, 693, 795, 800
CviKI_1	RGCY	9 cut(s)	19, 61, 88, 95, 158, 670, 693, 795, 800
CviQI	GTAC	3 cut(s)	103, 529, 548
DdeI	CTNAG	3 cut(s)	624, 847, 860
DpnI	GATC	8 cut(s)	30, 171, 237, 474, 483, 614, 749, 858
DpnII	GATC	8 cut(s)	28, 169, 235, 472, 481, 612, 747, 856
EaeI	YGGCCR	1 cut(s)	793
Eco105I	TACGTA	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	420, 815
Eco57I	CTGAAG	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	641, 769
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FalI	AAGNNNNNCTT	4 cut(s)	156, 188, 693, 725
FokI	GGATG	1 cut(s)	805
HaeIII	GGCC	1 cut(s)	795
HapII	CCGG	1 cut(s)	371
HindIII	AAGCTT	1 cut(s)	691
HinfI	GANTC	2 cut(s)	824, 845
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	1 cut(s)	878
Hpy188I	TCNGA	8 cut(s)	68, 240, 387, 651, 823, 829, 850, 861
Hpy188III	TCNNGA	3 cut(s)	371, 476, 623
HpyAV	CCTTC	4 cut(s)	19, 382, 612, 770
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	2 cut(s)	280, 550
HpyCH4V	TGCA	9 cut(s)	189, 272, 325, 359, 410, 567, 698, 761, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 365
HpyF3I	CTNAG	3 cut(s)	624, 847, 860
HpySE526I	ACGT	2 cut(s)	280, 550
Kpn2I	TCCGGA	1 cut(s)	370
Kzo9I	GATC	8 cut(s)	28, 169, 235, 472, 481, 612, 747, 856
LmnI	GCTCC	4 cut(s)	85, 373, 455, 809
LweI	GCATC	1 cut(s)	748
MaeII	ACGT	2 cut(s)	280, 550
MaeIII	GTNAC	4 cut(s)	227, 293, 430, 866
MalI	GATC	8 cut(s)	30, 171, 237, 474, 483, 614, 749, 858
MboI	GATC	8 cut(s)	28, 169, 235, 472, 481, 612, 747, 856
MboII	GAAGA	7 cut(s)	88, 130, 133, 164, 491, 611, 746
MflI	RGATCY	5 cut(s)	28, 169, 235, 472, 481
MlsI	TGGCCA	1 cut(s)	795
MluCI	AATT	7 cut(s)	183, 222, 288, 490, 513, 655, 672
MluNI	TGGCCA	1 cut(s)	795
MlyI	GAGTC	2 cut(s)	818, 839
MmeI	TCCRAC	3 cut(s)	328, 433, 846
MnlI	CCTC	8 cut(s)	3, 51, 107, 367, 463, 495, 603, 670
Mox20I	TGGCCA	1 cut(s)	795
MroI	TCCGGA	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	795
MseI	TTAA	3 cut(s)	99, 285, 877
Msp20I	TGGCCA	1 cut(s)	795
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	643, 771
MvaI	CCWGG	2 cut(s)	643, 771
MwoI	GCNNNNNNNGC	2 cut(s)	164, 365
NdeII	GATC	8 cut(s)	28, 169, 235, 472, 481, 612, 747, 856
NlaIV	GGNNCC	2 cut(s)	474, 781
NmuCI	GTSAC	4 cut(s)	227, 293, 430, 866
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PleI	GAGTC	2 cut(s)	818, 839
PpsI	GAGTC	2 cut(s)	818, 839
Ppu21I	YACGTR	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	641, 769
PspGI	CCWGG	2 cut(s)	641, 769
PspN4I	GGNNCC	2 cut(s)	474, 781
PspPI	GGNCC	2 cut(s)	420, 815
PsuI	RGATCY	5 cut(s)	28, 169, 235, 472, 481
RsaI	GTAC	3 cut(s)	104, 530, 549
RsaNI	GTAC	3 cut(s)	103, 529, 548
SaqAI	TTAA	3 cut(s)	99, 285, 877
Sau3AI	GATC	8 cut(s)	28, 169, 235, 472, 481, 612, 747, 856
Sau96I	GGNCC	2 cut(s)	420, 815
ScaI	AGTACT	1 cut(s)	530
SchI	GAGTC	2 cut(s)	818, 839
ScrFI	CCNGG	2 cut(s)	643, 771
SfaNI	GCATC	1 cut(s)	748
SinI	GGWCC	2 cut(s)	420, 815
SnaBI	TACGTA	1 cut(s)	551
Sse9I	AATT	7 cut(s)	183, 222, 288, 490, 513, 655, 672
StyD4I	CCNGG	2 cut(s)	641, 769
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	2 cut(s)	283, 553
TaqI	TCGA	1 cut(s)	487
TasI	AATT	7 cut(s)	183, 222, 288, 490, 513, 655, 672
TatI	WGTACW	2 cut(s)	102, 528
Tru1I	TTAA	3 cut(s)	99, 285, 877
Tru9I	TTAA	3 cut(s)	99, 285, 877
TseFI	GTSAC	4 cut(s)	227, 293, 430, 866
Tsp45I	GTSAC	4 cut(s)	227, 293, 430, 866
TspDTI	ATGAA	2 cut(s)	38, 164
TspGWI	ACGGA	1 cut(s)	279
VpaK11BI	GGWCC	2 cut(s)	420, 815
XapI	RAATTY	5 cut(s)	183, 222, 288, 490, 655
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
ZrmI	AGTACT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.