Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010641

Physical Location & Seq

Genomic Coordinates Reverse (-)

7311912 .. 7312646

Gene Structure 735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0093300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCTCGTTTCGGGGTCGAAGGAGATCGGCGAGCAACACCTTCACCAAGAACGTTCGAGTGGACGTTGGAGCATCACAAGAAGTGTGTTGACACCTTCATCTTTCTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCCCTAAAGGCGGAGCTGTTGAGCCTGGCAGGGTGTTGTTGCAGAAGCTCTTACCTTGACTTCCACATTTCCTTGCTTGGTCTACTACAGAAAAGCTCCGAAGCATTATTTTCCTCTAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTCAAAAGATGTCATCGTTATGGACACTGGAGCATCACCGACGGGTCGTGGAGGCGGTGATACAGCTCGGTGGGCTTAGCAGTAGCAAGACTACCCCAAAGGCCGTGCTGAAGCTGATGGATGAGGAGGACCGCCGCCAAGGCCTCACCACAAAGATGATAGCGCACCACCTTTTGGGGCTGTATCATTTGCAGAAGGAAACTCAACGGGTAATTGCTTTTGGATTGGCTGGTGGTGAAGAAGAAAGAGAGCTGGCGCTTAGGGAGCTCCGATACCTTGTTTTTAGAGAATTTCCCCAACTACGGAATATCTTTCTATACACAAATGTAAAAGATCCTCTTCTCCGACAACACCTTGGGCTCCTCAAACAAGTTAATATATCACACCGGATAAGATTACAGATTATGAAGTCTGAGTGGGAAGTATCAAGAGCTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

244

Amino Acids

28.01

Weight (kDa)

9.28

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23030
fragaria_vesca	FvH4_5g20490 FvH4_5g20490 FvH4_5g20490
malus_domestica	MD04G1054400.v1.1 MD06G1046300.v1.1
prunus_persica	Prupe.5G054500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0205831
rosa_laevigata	RLG00000003352
rosa_multiflora	Rmu_sc0000076.1_g000048 Rmu_sc0008518.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251960
rosa_rugosa	Rorug07G0093200 Rorug07G0093200 Rorug07G0093300
rosa_samantha	Rh7AG224800 Rh7BG220000 Rh7CG238500 Rh7DG231600
rosa_wichuraiana	Rw7G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	5 cut(s)	111, 152, 347, 424, 427
AclI	AACGTT	1 cut(s)	53
AclWI	GGATC	1 cut(s)	620
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	4 cut(s)	151, 286, 466, 594
AgsI	TTSAA	2 cut(s)	275, 731
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	8 cut(s)	157, 189, 237, 358, 406, 544, 559, 725
AluI	AGCT	8 cut(s)	157, 189, 237, 358, 406, 544, 559, 725
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	620
AoxI	GGCC	2 cut(s)	393, 433
ApoI	RAATTY	1 cut(s)	581
AspLEI	GCGC	2 cut(s)	457, 550
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	7 cut(s)	36, 125, 259, 320, 361, 430, 539
AvaII	GGWCC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	2 cut(s)	561, 654
Bbv12I	GWGCWC	1 cut(s)	561
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	227
BfoI	RGCGCY	1 cut(s)	551
BglI	GCCNNNNNGGC	2 cut(s)	149, 432
BisI	GCNGC	1 cut(s)	427
BlpI	GCTNAGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	291, 653
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	82, 334
BpmI	CTGGAG	1 cut(s)	341
Bpu10I	CCTNAGC	1 cut(s)	551
Bpu1102I	GCTNAGC	1 cut(s)	368
BsaAI	YACGTR	1 cut(s)	286
BsaJI	CCNNGG	2 cut(s)	430, 646
BsaWI	WCCGGW	1 cut(s)	678
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 286, 466, 594
Bse1I	ACTGG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	430, 646
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	4 cut(s)	151, 286, 466, 594
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	2 cut(s)	431, 644
BshFI	GGCC	2 cut(s)	395, 435
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	679
BslI	CCNNNNNNNGG	4 cut(s)	151, 286, 466, 594
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	2 cut(s)	395, 435
Bsp1286I	GDGCHC	2 cut(s)	561, 654
Bsp143I	GATC	2 cut(s)	25, 625
Bsp1720I	GCTNAGC	1 cut(s)	368
BspACI	CCGC	5 cut(s)	111, 152, 347, 424, 427
BspANI	GGCC	2 cut(s)	395, 435
BspCNI	CTCAG	1 cut(s)	697
BspLI	GGNNCC	2 cut(s)	291, 653
BspPI	GGATC	1 cut(s)	620
BspT107I	GGYRCC	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	2 cut(s)	430, 646
BssMI	GATC	2 cut(s)	25, 625
BssT1I	CCWWGG	2 cut(s)	430, 646
Bst2UI	CCWGG	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	636
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	33, 546
BstDEI	CTNAG	3 cut(s)	368, 551, 705
BstF5I	GGATG	1 cut(s)	418
BstH2I	RGCGCY	1 cut(s)	551
BstHHI	GCGC	2 cut(s)	457, 550
BstKTI	GATC	2 cut(s)	28, 628
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	25, 625
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 364, 432, 556
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	395, 435
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	33, 546
CfoI	GCGC	2 cut(s)	457, 550
Cfr13I	GGNCC	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	134
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	3 cut(s)	368, 551, 705
DpnI	GATC	2 cut(s)	27, 627
DpnII	GATC	2 cut(s)	25, 625
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	2 cut(s)	430, 646
Eco147I	AGGCCT	1 cut(s)	435
Eco24I	GRGCYC	2 cut(s)	561, 654
Eco47I	GGWCC	1 cut(s)	421
Eco53kI	GAGCTC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	430, 646
EcoT38I	GRGCYC	2 cut(s)	561, 654
ErhI	CCWWGG	2 cut(s)	430, 646
FaiI	YATR	5 cut(s)	283, 313, 610, 671, 698
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 615, 647
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	427
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	2 cut(s)	561, 654
Fsp4HI	GCNGC	1 cut(s)	427
GlaI	GCGC	2 cut(s)	456, 549
GluI	GCNGC	1 cut(s)	427
GsuI	CTGGAG	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	551
HaeIII	GGCC	2 cut(s)	395, 435
HapII	CCGG	1 cut(s)	679
HhaI	GCGC	2 cut(s)	457, 550
Hin6I	GCGC	2 cut(s)	455, 548
HinP1I	GCGC	2 cut(s)	455, 548
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	679
HphI	GGTGA	7 cut(s)	36, 125, 259, 320, 361, 430, 539
Hpy166II	GTNNAC	4 cut(s)	63, 91, 136, 224
Hpy188I	TCNGA	4 cut(s)	241, 563, 638, 706
Hpy188III	TCNNGA	1 cut(s)	720
Hpy8I	GTNNAC	4 cut(s)	63, 91, 136, 224
Hpy99I	CGWCG	1 cut(s)	336
HpyAV	CCTTC	4 cut(s)	14, 51, 106, 481
HpyCH4IV	ACGT	3 cut(s)	53, 65, 285
HpyCH4V	TGCA	2 cut(s)	183, 484
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 364, 432, 556
HpyF3I	CTNAG	3 cut(s)	368, 551, 705
HpySE526I	ACGT	3 cut(s)	53, 65, 285
HspAI	GCGC	2 cut(s)	455, 548
Kzo9I	GATC	2 cut(s)	25, 625
LmnI	GCTCC	7 cut(s)	70, 154, 242, 322, 556, 564, 657
LpnPI	CCDG	8 cut(s)	92, 152, 156, 179, 305, 507, 530, 692
LweI	GCATC	2 cut(s)	82, 334
MaeII	ACGT	3 cut(s)	53, 65, 285
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	2 cut(s)	27, 627
MboI	GATC	2 cut(s)	25, 625
MboII	GAAGA	3 cut(s)	542, 545, 623
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	2 cut(s)	561, 654
MluCI	AATT	2 cut(s)	504, 581
MmeI	TCCRAC	3 cut(s)	48, 109, 661
MnlI	CCTC	8 cut(s)	265, 303, 337, 409, 412, 446, 639, 665
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	2 cut(s)	310, 446
MspI	CCGG	1 cut(s)	679
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	4 cut(s)	149, 364, 432, 556
NdeII	GATC	2 cut(s)	25, 625
NlaIV	GGNNCC	2 cut(s)	291, 653
NmuCI	GTSAC	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	435
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	428
Ppu21I	YACGTR	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	561
Psp1406I	AACGTT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	291, 653
PspPI	GGNCC	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	2 cut(s)	310, 446
SacI	GAGCTC	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	1 cut(s)	427
Sau3AI	GATC	2 cut(s)	25, 625
Sau96I	GGNCC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	2 cut(s)	561, 654
SfaNI	GCATC	2 cut(s)	82, 334
SfcI	CTRYAG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	2 cut(s)	310, 446
Sse9I	AATT	2 cut(s)	504, 581
SseBI	AGGCCT	1 cut(s)	435
SsiI	CCGC	5 cut(s)	111, 152, 347, 424, 427
SstI	GAGCTC	1 cut(s)	561
StuI	AGGCCT	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	2 cut(s)	430, 646
TaiI	ACGT	3 cut(s)	56, 68, 288
TaqI	TCGA	2 cut(s)	18, 57
TasI	AATT	2 cut(s)	504, 581
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	1 cut(s)	429
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	88, 713
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.