Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010641

Physical Location & Seq

Genomic Coordinates Reverse (-)

22911582 .. 22915478

Gene Structure 3897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG231600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAATATGCAGCTGGTGGTGAACTCTTTGAGAGGATATGTAGTGCTGGTAGATTTAGTGAAGATGAGGCAAGATTTTTCTTTCAGCAGCTGATATCTGGAGTCAGCTACTGTCATTCCATGGAAATTTGTCACAGGGATCTGAAACTGGAAAACACACTCTTGGACGGAAGTGCAACACCACGTCTTAAAATTTGTGACTTTGGATACTCCAAGTCTGCTATTTTGCACTCGCAACCAAAATCAACTGTCGGAACGCCTGCATACATTGCTCCGGAGGTTCTGTCACGGAAGGAATATGATGGAAAGATTGCAGATGTTTGGTCCTGTGGTGTGACACTATATGTGATGTTGGTTGGAGCATATCCTTTTGAGGATCCTGAAGATCCTCGAAATTTTCGTAAGACCATTGAGAGAATTATGAGTGTCCAGTACACCATACCCGACTATGTACGTATTTCAGCAGACTGCAAGCACCTACTTTCTCGTGTTTTTGTTGCCAACCCTTCTAAGAGGATGAGTCTTCCTGAGATAAAACAGCACCCCTGGTTTCTGAAAAATTTGGCGAGAGAGCTAATTGAGGTTGAGAAAAAAAGCTTTGCAGAAGTGGAACGTGACCACCCAACACAGAGCATTGAAGAAATAAATAGGATCATACAAGATGCAAGGACACCAGGGGAAGGTTCCAAAGGAGTTGGCCACGCTGTTGCAGGAGCAGGACCATCCGACTCTGATGATGTAGATTTGGACTCAGAAGTTGATCTCAGTGGTGACTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

260

Amino Acids

29.09

Weight (kDa)

5.16

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 184	1.8e-52	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 180	9.8e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23030
fragaria_vesca	FvH4_5g20490 FvH4_5g20490 FvH4_5g20490
malus_domestica	MD04G1054400.v1.1 MD06G1046300.v1.1
prunus_persica	Prupe.5G054500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0205831
rosa_laevigata	RLG00000003352
rosa_multiflora	Rmu_sc0000076.1_g000048 Rmu_sc0008518.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251960
rosa_rugosa	Rorug07G0093200 Rorug07G0093200 Rorug07G0093300
rosa_samantha	Rh7AG224800 Rh7BG220000 Rh7CG238500 Rh7DG231600
rosa_wichuraiana	Rw7G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	274
AclWI	GGATC	5 cut(s)	147, 371, 380, 384, 659
AcoI	YGGCCR	1 cut(s)	697
AcsI	RAATTY	4 cut(s)	126, 192, 394, 559
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	2 cut(s)	434, 453
AfiI	CCNNNNNNNGG	1 cut(s)	680
AgsI	TTSAA	1 cut(s)	638
AjiI	CACGTC	1 cut(s)	185
AjnI	CCWGG	2 cut(s)	545, 673
AluBI	AGCT	5 cut(s)	14, 91, 108, 574, 597
AluI	AGCT	5 cut(s)	14, 91, 108, 574, 597
AlwI	GGATC	5 cut(s)	147, 371, 380, 384, 659
AlwNI	CAGNNNCTG	2 cut(s)	91, 111
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	1 cut(s)	697
ApeKI	GCWGC	2 cut(s)	11, 88
ApoI	RAATTY	4 cut(s)	126, 192, 394, 559
AspS9I	GGNCC	2 cut(s)	324, 719
AsuHPI	GGTGA	2 cut(s)	32, 782
AvaII	GGWCC	2 cut(s)	324, 719
BalI	TGGCCA	1 cut(s)	699
BamHI	GGATCC	1 cut(s)	376
BauI	CACGAG	1 cut(s)	486
BbsI	GAAGAC	1 cut(s)	515
BbvI	GCAGC	2 cut(s)	23, 100
BccI	CCATC	2 cut(s)	296, 730
BciT130I	CCWGG	2 cut(s)	547, 675
BciVI	GTATCC	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	2 cut(s)	12, 89
BlsI	GCNGC	2 cut(s)	13, 90
Bme1390I	CCNGG	2 cut(s)	547, 675
Bme18I	GGWCC	2 cut(s)	324, 719
BmgBI	CACGTC	1 cut(s)	185
BmgT120I	GGNCC	2 cut(s)	324, 719
BmiI	GGNNCC	2 cut(s)	378, 685
BmrFI	CCNGG	2 cut(s)	547, 675
BmsI	GCATC	1 cut(s)	652
BpiI	GAAGAC	1 cut(s)	515
BpmI	CTGGAG	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	455
BsaJI	CCNNGG	3 cut(s)	120, 545, 674
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse1I	ACTGG	2 cut(s)	153, 430
Bse3DI	GCAATG	1 cut(s)	267
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	2 cut(s)	547, 675
BseDI	CCNNGG	3 cut(s)	120, 545, 674
BseGI	GGATG	2 cut(s)	522, 722
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	3 cut(s)	519, 765, 778
BseNI	ACTGG	2 cut(s)	153, 430
BseXI	GCAGC	2 cut(s)	23, 100
BshFI	GGCC	1 cut(s)	699
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	680
BsnI	GGCC	1 cut(s)	699
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	5 cut(s)	139, 376, 385, 651, 760
Bsp19I	CCATGG	1 cut(s)	120
BspANI	GGCC	1 cut(s)	699
BspCNI	CTCAG	3 cut(s)	520, 764, 777
BspEI	TCCGGA	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	378, 685
BspPI	GGATC	5 cut(s)	147, 371, 380, 384, 659
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	153, 430
BssECI	CCNNGG	3 cut(s)	120, 545, 674
BssMI	GATC	5 cut(s)	139, 376, 385, 651, 760
BssSI	CACGAG	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	547, 675
Bst4CI	ACNGT	2 cut(s)	113, 250
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	261, 473
BstDEI	CTNAG	4 cut(s)	510, 528, 751, 764
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	522, 722
BstKTI	GATC	5 cut(s)	142, 379, 388, 654, 763
BstMBI	GATC	5 cut(s)	139, 376, 385, 651, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	2 cut(s)	547, 675
BstSCI	CCNGG	2 cut(s)	545, 673
BstSNI	TACGTA	1 cut(s)	455
BstV1I	GCAGC	2 cut(s)	23, 100
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	3 cut(s)	139, 376, 385
BstYI	RGATCY	3 cut(s)	139, 376, 385
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	699
BtgI	CCRYGG	1 cut(s)	120
BtrI	CACGTC	1 cut(s)	185
BtsCI	GGATG	2 cut(s)	522, 722
BtsIMutI	CAGTG	1 cut(s)	772
Cac8I	GCNNGC	2 cut(s)	261, 473
CaiI	CAGNNNCTG	2 cut(s)	91, 111
Cfr13I	GGNCC	2 cut(s)	324, 719
Csp6I	GTAC	2 cut(s)	433, 452
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	6 cut(s)	14, 91, 108, 574, 597, 699
CviKI_1	RGCY	6 cut(s)	14, 91, 108, 574, 597, 699
CviQI	GTAC	2 cut(s)	433, 452
DdeI	CTNAG	4 cut(s)	510, 528, 751, 764
DpnI	GATC	5 cut(s)	141, 378, 387, 653, 762
DpnII	GATC	5 cut(s)	139, 376, 385, 651, 760
EaeI	YGGCCR	1 cut(s)	697
Eco105I	TACGTA	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	324, 719
Eco57I	CTGAAG	1 cut(s)	402
EcoRII	CCWGG	2 cut(s)	545, 673
EcoRV	GATATC	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	124
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	12, 89
FokI	GGATG	2 cut(s)	529, 709
Fsp4HI	GCNGC	2 cut(s)	12, 89
GluI	GCNGC	2 cut(s)	12, 89
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	699
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	4 cut(s)	102, 520, 728, 749
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	2 cut(s)	32, 782
Hpy166II	GTNNAC	2 cut(s)	23, 435
Hpy188I	TCNGA	6 cut(s)	144, 254, 555, 727, 733, 754
Hpy188III	TCNNGA	4 cut(s)	99, 275, 380, 527
Hpy8I	GTNNAC	2 cut(s)	23, 435
HpyAV	CCTTC	3 cut(s)	286, 516, 674
HpyCH4III	ACNGT	2 cut(s)	113, 250
HpyCH4IV	ACGT	3 cut(s)	184, 454, 613
HpyCH4V	TGCA	9 cut(s)	11, 176, 229, 263, 314, 471, 602, 665, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	4 cut(s)	510, 528, 751, 764
HpySE526I	ACGT	3 cut(s)	184, 454, 613
Hsp92II	CATG	1 cut(s)	124
Kpn2I	TCCGGA	1 cut(s)	274
Kzo9I	GATC	5 cut(s)	139, 376, 385, 651, 760
LmnI	GCTCC	3 cut(s)	277, 359, 713
Lsp1109I	GCAGC	2 cut(s)	23, 100
LweI	GCATC	1 cut(s)	652
MaeII	ACGT	3 cut(s)	184, 454, 613
MaeIII	GTNAC	6 cut(s)	131, 197, 285, 334, 614, 770
MalI	GATC	5 cut(s)	141, 378, 387, 653, 762
MboI	GATC	5 cut(s)	139, 376, 385, 651, 760
MboII	GAAGA	4 cut(s)	74, 395, 515, 650
MflI	RGATCY	3 cut(s)	139, 376, 385
MlsI	TGGCCA	1 cut(s)	699
MluCI	AATT	6 cut(s)	126, 192, 394, 417, 559, 576
MluNI	TGGCCA	1 cut(s)	699
MlyI	GAGTC	4 cut(s)	111, 529, 722, 743
MmeI	TCCRAC	3 cut(s)	232, 337, 750
MnlI	CCTC	7 cut(s)	27, 61, 271, 367, 399, 507, 574
Mox20I	TGGCCA	1 cut(s)	699
MroI	TCCGGA	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	699
MseI	TTAA	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	699
MspA1I	CMGCKG	2 cut(s)	14, 91
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	547, 675
MvaI	CCWGG	2 cut(s)	547, 675
MwoI	GCNNNNNNNGC	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	5 cut(s)	139, 376, 385, 651, 760
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	2 cut(s)	378, 685
NmuCI	GTSAC	6 cut(s)	131, 197, 285, 334, 614, 770
PcsI	WCGNNNNNNNCGW	1 cut(s)	397
PkrI	GCNGC	2 cut(s)	13, 90
PleI	GAGTC	4 cut(s)	110, 528, 722, 743
PpsI	GAGTC	4 cut(s)	110, 528, 722, 743
Ppu21I	YACGTR	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	545, 673
PspGI	CCWGG	2 cut(s)	545, 673
PspN4I	GGNNCC	2 cut(s)	378, 685
PspPI	GGNCC	2 cut(s)	324, 719
PstNI	CAGNNNCTG	2 cut(s)	91, 111
PsuI	RGATCY	3 cut(s)	139, 376, 385
PvuII	CAGCTG	2 cut(s)	14, 91
RsaI	GTAC	2 cut(s)	434, 453
RsaNI	GTAC	2 cut(s)	433, 452
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	12, 89
Sau3AI	GATC	5 cut(s)	139, 376, 385, 651, 760
Sau96I	GGNCC	2 cut(s)	324, 719
SchI	GAGTC	4 cut(s)	111, 529, 722, 743
ScrFI	CCNGG	2 cut(s)	547, 675
SfaNI	GCATC	1 cut(s)	652
SinI	GGWCC	2 cut(s)	324, 719
SnaBI	TACGTA	1 cut(s)	455
Sse9I	AATT	6 cut(s)	126, 192, 394, 417, 559, 576
StyD4I	CCNGG	2 cut(s)	545, 673
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	113, 250
TaiI	ACGT	3 cut(s)	187, 457, 616
TaqI	TCGA	1 cut(s)	391
TasI	AATT	6 cut(s)	126, 192, 394, 417, 559, 576
TatI	WGTACW	1 cut(s)	432
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	772
TseFI	GTSAC	6 cut(s)	131, 197, 285, 334, 614, 770
TseI	GCWGC	2 cut(s)	11, 88
Tsp45I	GTSAC	6 cut(s)	131, 197, 285, 334, 614, 770
TspGWI	ACGGA	2 cut(s)	183, 304
TspRI	CASTG	1 cut(s)	772
VpaK11BI	GGWCC	2 cut(s)	324, 719
XapI	RAATTY	4 cut(s)	126, 192, 394, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.