Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010641

Physical Location & Seq

Genomic Coordinates Forward (+)

5830703 .. 5834590

Gene Structure 3888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G054500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAGGAGAGGTATGAGGCAATGAAGGATCTTGGTTCTGGGAATTTTGGAGTGGCAAGGCTGGTCAGAGATAAGAAGACCAAGGAGCTTGTTGCAGTCAAATACATAGAAAGGGGAAAGAAGATTGATGAGAATGTTCAGAGGGAAATCATAAATCACAGGTCCCTGAGGCATCCAAATATTGTCAGGTTCAAAGAGGTCTTGCTGACTCCAAGTCATTTAGCTATTGTCATGGAATATGCAGCTGGTGGTGAACTTTTTGAGAGGATCTGCAGTGCTGGTAGATTTAGCGAAGATGAGGCAAGATTTTTCTTCCAGCAGCTGATATCTGGAGTCAGCTACTGTCATTCCATGGAAATTTGTCACAGGGATCTGAAACTGGAAAATACACTCTTAGATGGAAGTGCAACACCACGTCTTAAAATTTGCGACTTTGGATACTCCAAGTCTGCTCTGTTGCACTCACAACCAAAATCAACAGTTGGAACGCCTGCATACATTGCTCCAGAGGTTCTATCACGGAAGGAATATGACGGAAAGATTGCGGATGTTTGGTCCTGTGGTGTGACGCTATACGTGATGTTGGTAGGAGCATATCCTTTTGAGGATCCTGAAGATCCTAGAAATTTTCGTAAGACCATCGAGAGAATTATGAGTGTTCAGTACTCCATACCCGACTATGTACGTGTTTCTGCAGGCTGCAAGCAGCTACTTTCTCGTATTTTTGTTGCCAACCCTTCCAAGAGGATCACTCTTCCTGAGATAAAACAGCACCCTTGGTTTCTGAAAAATCTGCCAAAAGAGCTCATTGAGGCTGAGAAAACAAACTATGCGGCAGTGGAGCGAGACCAACTACAGAGAATTGAAGAAATAAATAGGATCATAGATGAGGCAAGGACACCAGGGCAAGGATCCAAAGCAGGCGGCCTAGCTGTTGCCGGGCCATCCGACTCTGATGATGTAGAGGCTGATTTGGACTCCGAAGTCGATGTCAGTGGTGACTTTGCAGTCCCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

340

Amino Acids

38.17

Weight (kDa)

5.91

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23030
fragaria_vesca	FvH4_5g20490 FvH4_5g20490 FvH4_5g20490
malus_domestica	MD04G1054400.v1.1 MD06G1046300.v1.1
prunus_persica	Prupe.5G054500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0205831
rosa_laevigata	RLG00000003352
rosa_multiflora	Rmu_sc0000076.1_g000048 Rmu_sc0008518.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251960
rosa_rugosa	Rorug07G0093200 Rorug07G0093200 Rorug07G0093300
rosa_samantha	Rh7AG224800 Rh7BG220000 Rh7CG238500 Rh7DG231600
rosa_wichuraiana	Rw7G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	983, 1007
AciI	CCGC	3 cut(s)	545, 833, 924
AcsI	RAATTY	4 cut(s)	43, 357, 423, 625
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	2 cut(s)	665, 684
AfiI	CCNNNNNNNGG	1 cut(s)	908
AflIII	ACRYGT	1 cut(s)	685
AgsI	TTSAA	2 cut(s)	193, 866
AhdI	GACNNNNNGTC	1 cut(s)	213
AjiI	CACGTC	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	901
AluBI	AGCT	8 cut(s)	88, 224, 245, 322, 339, 709, 805, 932
AluI	AGCT	8 cut(s)	88, 224, 245, 322, 339, 709, 805, 932
Alw21I	GWGCWC	1 cut(s)	807
Alw26I	GTCTC	1 cut(s)	840
AlwNI	CAGNNNCTG	2 cut(s)	322, 342
AoxI	GGCC	2 cut(s)	925, 941
ApeKI	GCWGC	4 cut(s)	242, 319, 699, 706
ApoI	RAATTY	4 cut(s)	43, 357, 423, 625
ArsI	GACNNNNNNTTYG	2 cut(s)	975, 1007
AspS9I	GGNCC	3 cut(s)	162, 555, 941
AsuC2I	CCSGG	1 cut(s)	940
AsuHPI	GGTGA	2 cut(s)	263, 1010
AvaII	GGWCC	2 cut(s)	162, 555
AxyI	CCTNAGG	1 cut(s)	167
BamHI	GGATCC	2 cut(s)	607, 911
BanII	GRGCYC	1 cut(s)	807
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	807
BbvI	GCAGC	4 cut(s)	254, 331, 686, 718
BccI	CCATC	3 cut(s)	392, 647, 952
BciT130I	CCWGG	1 cut(s)	903
BciVI	GTATCC	1 cut(s)	431
BcnI	CCSGG	1 cut(s)	940
BcoDI	GTCTC	1 cut(s)	840
BfaI	CTAG	2 cut(s)	621, 929
BfmI	CTRYAG	3 cut(s)	271, 693, 854
BfuI	GTATCC	1 cut(s)	431
BisI	GCNGC	6 cut(s)	243, 320, 700, 707, 834, 925
BlsI	GCNGC	6 cut(s)	244, 321, 701, 708, 835, 926
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	2 cut(s)	903, 940
Bme18I	GGWCC	2 cut(s)	162, 555
BmeRI	GACNNNNNGTC	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	416
BmgT120I	GGNCC	3 cut(s)	162, 555, 941
BmiI	GGNNCC	3 cut(s)	164, 609, 913
BmrFI	CCNGG	2 cut(s)	903, 940
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	736, 768
BpmI	CTGGAG	2 cut(s)	351, 489
BpuMI	CCSGG	1 cut(s)	940
BsaAI	YACGTR	2 cut(s)	577, 686
BsaI	GGTCTC	1 cut(s)	840
BsaJI	CCNNGG	4 cut(s)	81, 351, 776, 902
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	908
Bse1I	ACTGG	1 cut(s)	384
Bse21I	CCTNAGG	1 cut(s)	167
Bse3DI	GCAATG	2 cut(s)	27, 498
BseBI	CCWGG	1 cut(s)	903
BseDI	CCNNGG	4 cut(s)	81, 351, 776, 902
BseGI	GGATG	3 cut(s)	172, 553, 944
BseLI	CCNNNNNNNGG	1 cut(s)	908
BseMI	GCAATG	2 cut(s)	27, 498
BseMII	CTCAG	3 cut(s)	158, 750, 807
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	4 cut(s)	254, 331, 686, 718
BshFI	GGCC	2 cut(s)	927, 943
BsiHKAI	GWGCWC	1 cut(s)	807
BsiSI	CCGG	1 cut(s)	939
BslFI	GGGAC	2 cut(s)	148, 995
BslI	CCNNNNNNNGG	1 cut(s)	908
BsmAI	GTCTC	1 cut(s)	840
BsmFI	GGGAC	2 cut(s)	148, 995
BsnI	GGCC	2 cut(s)	927, 943
Bso31I	GGTCTC	1 cut(s)	840
Bsp1286I	GDGCHC	1 cut(s)	807
Bsp143I	GATC	8 cut(s)	28, 267, 370, 607, 616, 747, 879, 911
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	3 cut(s)	545, 833, 924
BspANI	GGCC	2 cut(s)	927, 943
BspCNI	CTCAG	3 cut(s)	159, 751, 808
BspLI	GGNNCC	3 cut(s)	164, 609, 913
BspMAI	CTGCAG	2 cut(s)	275, 697
BspTNI	GGTCTC	1 cut(s)	840
BsrDI	GCAATG	2 cut(s)	27, 498
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	4 cut(s)	81, 351, 776, 902
BssMI	GATC	8 cut(s)	28, 267, 370, 607, 616, 747, 879, 911
BssT1I	CCWWGG	3 cut(s)	81, 351, 776
Bst2UI	CCWGG	1 cut(s)	903
Bst4CI	ACNGT	2 cut(s)	344, 481
Bst6I	CTCTTC	1 cut(s)	759
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBAI	YACGTR	2 cut(s)	577, 686
BstC8I	GCNNGC	4 cut(s)	492, 697, 704, 922
BstDEI	CTNAG	4 cut(s)	167, 394, 759, 816
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	3 cut(s)	172, 553, 944
BstKTI	GATC	8 cut(s)	31, 270, 373, 610, 619, 750, 882, 914
BstMAI	GTCTC	1 cut(s)	840
BstMBI	GATC	8 cut(s)	28, 267, 370, 607, 616, 747, 879, 911
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 802
BstNI	CCWGG	1 cut(s)	903
BstSCI	CCNGG	2 cut(s)	901, 938
BstSFI	CTRYAG	3 cut(s)	271, 693, 854
BstV1I	GCAGC	4 cut(s)	254, 331, 686, 718
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	6 cut(s)	28, 267, 370, 607, 616, 911
BstYI	RGATCY	6 cut(s)	28, 267, 370, 607, 616, 911
Bsu36I	CCTNAGG	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	927, 943
BtgI	CCRYGG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	416
BtsCI	GGATG	3 cut(s)	172, 553, 944
BtsI	GCAGTG	2 cut(s)	280, 843
BtsIMutI	CAGTG	3 cut(s)	280, 843, 1000
Cac8I	GCNNGC	4 cut(s)	492, 697, 704, 922
CaiI	CAGNNNCTG	2 cut(s)	322, 342
Cfr13I	GGNCC	3 cut(s)	162, 555, 941
CseI	GACGC	1 cut(s)	577
Csp6I	GTAC	2 cut(s)	664, 683
CviAII	CATG	2 cut(s)	232, 352
CviQI	GTAC	2 cut(s)	664, 683
DdeI	CTNAG	4 cut(s)	167, 394, 759, 816
DpnI	GATC	8 cut(s)	30, 269, 372, 609, 618, 749, 881, 913
DpnII	GATC	8 cut(s)	28, 267, 370, 607, 616, 747, 879, 911
DrdI	GACNNNNNNGTC	2 cut(s)	983, 1007
DriI	GACNNNNNGTC	1 cut(s)	213
DseDI	GACNNNNNNGTC	2 cut(s)	983, 1007
Eam1104I	CTCTTC	1 cut(s)	759
Eam1105I	GACNNNNNGTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	759
Ecl136II	GAGCTC	1 cut(s)	805
Eco130I	CCWWGG	3 cut(s)	81, 351, 776
Eco24I	GRGCYC	1 cut(s)	807
Eco31I	GGTCTC	1 cut(s)	840
Eco32I	GATATC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	162, 555
Eco53kI	GAGCTC	1 cut(s)	805
Eco57I	CTGAAG	1 cut(s)	633
Eco81I	CCTNAGG	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	805
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	901
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	3 cut(s)	81, 351, 776
EcoT38I	GRGCYC	1 cut(s)	807
ErhI	CCWWGG	3 cut(s)	81, 351, 776
FaeI	CATG	2 cut(s)	235, 355
FaqI	GGGAC	2 cut(s)	148, 995
FatI	CATG	2 cut(s)	231, 351
Fnu4HI	GCNGC	6 cut(s)	243, 320, 700, 707, 834, 925
FokI	GGATG	3 cut(s)	159, 560, 931
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	6 cut(s)	243, 320, 700, 707, 834, 925
FspBI	CTAG	2 cut(s)	621, 929
GluI	GCNGC	6 cut(s)	243, 320, 700, 707, 834, 925
GsuI	CTGGAG	2 cut(s)	351, 489
HaeIII	GGCC	2 cut(s)	927, 943
HapII	CCGG	1 cut(s)	939
HgaI	GACGC	1 cut(s)	577
Hin1II	CATG	2 cut(s)	235, 355
HinfI	GANTC	4 cut(s)	208, 333, 950, 977
HpaII	CCGG	1 cut(s)	939
HphI	GGTGA	2 cut(s)	263, 1010
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	7 cut(s)	68, 141, 375, 786, 949, 955, 982
Hpy188III	TCNNGA	5 cut(s)	330, 506, 611, 643, 758
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	19, 517, 747
HpyCH4III	ACNGT	2 cut(s)	344, 481
HpyCH4IV	ACGT	3 cut(s)	415, 576, 685
HpyCH4V	TGCA	9 cut(s)	95, 242, 273, 407, 460, 494, 695, 702, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 802
HpyF3I	CTNAG	4 cut(s)	167, 394, 759, 816
HpySE526I	ACGT	3 cut(s)	415, 576, 685
Hsp92II	CATG	2 cut(s)	235, 355
Kzo9I	GATC	8 cut(s)	28, 267, 370, 607, 616, 747, 879, 911
LmnI	GCTCC	4 cut(s)	85, 508, 590, 841
Lsp1109I	GCAGC	4 cut(s)	254, 331, 686, 718
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	621, 929
MaeII	ACGT	3 cut(s)	415, 576, 685
MaeIII	GTNAC	3 cut(s)	362, 565, 998
MalI	GATC	8 cut(s)	30, 269, 372, 609, 618, 749, 881, 913
MboI	GATC	8 cut(s)	28, 267, 370, 607, 616, 747, 879, 911
MboII	GAAGA	7 cut(s)	88, 133, 304, 305, 626, 746, 878
MflI	RGATCY	6 cut(s)	28, 267, 370, 607, 616, 911
MhlI	GDGCHC	1 cut(s)	807
MluCI	AATT	6 cut(s)	43, 357, 423, 625, 648, 861
MlyI	GAGTC	4 cut(s)	202, 342, 944, 971
MmeI	TCCRAC	2 cut(s)	463, 972
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	2 cut(s)	245, 322
MspI	CCGG	1 cut(s)	939
MspR9I	CCNGG	2 cut(s)	903, 940
MvaI	CCWGG	1 cut(s)	903
MwoI	GCNNNNNNNGC	2 cut(s)	500, 802
NciI	CCSGG	1 cut(s)	940
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	8 cut(s)	28, 267, 370, 607, 616, 747, 879, 911
NlaIII	CATG	2 cut(s)	235, 355
NlaIV	GGNNCC	3 cut(s)	164, 609, 913
NmuCI	GTSAC	3 cut(s)	362, 565, 998
PkrI	GCNGC	6 cut(s)	244, 321, 701, 708, 835, 926
PleI	GAGTC	4 cut(s)	202, 341, 944, 971
PpsI	GAGTC	4 cut(s)	202, 341, 944, 971
Ppu21I	YACGTR	2 cut(s)	577, 686
PpuMI	RGGWCCY	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	807
Psp5II	RGGWCCY	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	901
PspGI	CCWGG	1 cut(s)	901
PspN4I	GGNNCC	3 cut(s)	164, 609, 913
PspPI	GGNCC	3 cut(s)	162, 555, 941
PspPPI	RGGWCCY	1 cut(s)	162
PstI	CTGCAG	2 cut(s)	275, 697
PstNI	CAGNNNCTG	2 cut(s)	322, 342
PsuI	RGATCY	6 cut(s)	28, 267, 370, 607, 616, 911
PvuII	CAGCTG	2 cut(s)	245, 322
RsaI	GTAC	2 cut(s)	665, 684
RsaNI	GTAC	2 cut(s)	664, 683
SacI	GAGCTC	1 cut(s)	807
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	6 cut(s)	243, 320, 700, 707, 834, 925
Sau3AI	GATC	8 cut(s)	28, 267, 370, 607, 616, 747, 879, 911
Sau96I	GGNCC	3 cut(s)	162, 555, 941
ScaI	AGTACT	1 cut(s)	665
SchI	GAGTC	4 cut(s)	202, 342, 944, 971
ScrFI	CCNGG	2 cut(s)	903, 940
SduI	GDGCHC	1 cut(s)	807
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	3 cut(s)	271, 693, 854
SinI	GGWCC	2 cut(s)	162, 555
Sse9I	AATT	6 cut(s)	43, 357, 423, 625, 648, 861
SsiI	CCGC	3 cut(s)	545, 833, 924
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	2 cut(s)	621, 929
SstI	GAGCTC	1 cut(s)	807
StyD4I	CCNGG	2 cut(s)	901, 938
StyI	CCWWGG	3 cut(s)	81, 351, 776
TaaI	ACNGT	2 cut(s)	344, 481
TaiI	ACGT	3 cut(s)	418, 579, 688
TaqI	TCGA	2 cut(s)	642, 987
TasI	AATT	6 cut(s)	43, 357, 423, 625, 648, 861
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	2 cut(s)	836, 927
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	3 cut(s)	280, 843, 1000
TseFI	GTSAC	3 cut(s)	362, 565, 998
TseI	GCWGC	4 cut(s)	242, 319, 699, 706
Tsp45I	GTSAC	3 cut(s)	362, 565, 998
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	2 cut(s)	535, 549
TspRI	CASTG	3 cut(s)	280, 843, 1000
VpaK11BI	GGWCC	2 cut(s)	162, 555
XapI	RAATTY	4 cut(s)	43, 357, 423, 625
XspI	CTAG	2 cut(s)	621, 929
ZrmI	AGTACT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.