Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010641

Physical Location & Seq

Genomic Coordinates Forward (+)

6293617 .. 6297175

Gene Structure 3559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1046300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGGAGAGGTATGAGGCAATGAAGGATCTTGGCTCTGGGAATTTTGGAGTGGCAAGGCTGGTCAGAGATAAGAAGACAAAGGAGCTTGTTGCTGTCAAATACATAGAGAGGGGGAAAAAGATTGATGAGAATGTTCAGAGGGAAATAATAAATCACAGATCGTTGAGGCATCCAAATATTGTCAGGTTCAAAGAGCTCTTGCTGACTCCAAGTCATTTAGCAATTGTCATGGAATATGCAGCTGGCGGTGAACTTTTTGAGAGGATATGCACTGCTGGTAGATTTAGTGAAGACGAGGCAAGGTTTTTCTTCCAACAGCTGATATCCGGAGTCAGTTATTGTCATGCCATGGAAATTTGTCACAGGGATCTGAAACTGGAAAACACACTCTTGGATGGAAGTGCTTCACCACGTCTTAAAATATGCGACTTTGGTTACTCCAAGTCTGCTATATTACACTCACAGCCAAAATCAACTGTTGGAACACCTGCATACATTGCTCCGGAGGTTCTGTCACGGAAGGAATATGATGGAAAGATTGCAGATGTTTGGTCCTGTGGTGTGACGTTATACGTGATGTTGGTGGGAGAATATCCCTTTGAGGATCCTGAAGATCCTAGAAACTTTCGTAAGACCATTGAGAAAATTATGAGTGCCCAGTACACCATACCCGACTATGTACGTGTTTCTGCAGACTGCAAGCAACTACTTTCTCGTATTTTTGTTGCCAACCCTTCTAAGAGGATCAGTCTTCCTGAGATAAAAAAGCACCCTTGGTTTCTGAAAAATCTGCCGAAAGAGCTAATTGAGGTCGAGAGAACAAACTACGCGGTAGTGGAGCGTGACCAGCCTAAACAGAGCATTGAAGAAATAAATAAGATCATATGCGAGGCAAGGACACCAGGGGAAGGTGGATCCAAAGCAGGAGGTCAAGCCGTTGCTGGGCCGTCCGACTCTGGTGATCTAGAGACTGATTTGGACTCCGAAGTCGATGTCAGTTGTGGCTTTTCAGGCTATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

342

Amino Acids

38.4

Weight (kDa)

6.06

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	5 - 261	1.1e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	7 - 257	1.4e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23030
fragaria_vesca	FvH4_5g20490 FvH4_5g20490 FvH4_5g20490
malus_domestica	MD04G1054400.v1.1 MD06G1046300.v1.1
prunus_persica	Prupe.5G054500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0205831
rosa_laevigata	RLG00000003352
rosa_multiflora	Rmu_sc0000076.1_g000048 Rmu_sc0008518.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251960
rosa_rugosa	Rorug07G0093200 Rorug07G0093200 Rorug07G0093300
rosa_samantha	Rh7AG224800 Rh7BG220000 Rh7CG238500 Rh7DG231600
rosa_wichuraiana	Rw7G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
AasI	GACNNNNNNGTC	1 cut(s)	989
Acc36I	ACCTGC	1 cut(s)	499
AccII	CGCG	1 cut(s)	833
AccIII	TCCGGA	2 cut(s)	329, 505
AciI	CCGC	2 cut(s)	249, 833
AclWI	GGATC	8 cut(s)	36, 378, 602, 611, 615, 755, 912, 925
AcsI	RAATTY	2 cut(s)	43, 357
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	2 cut(s)	665, 684
AfiI	CCNNNNNNNGG	2 cut(s)	911, 945
AflIII	ACRYGT	1 cut(s)	685
AgsI	TTSAA	2 cut(s)	193, 869
AhdI	GACNNNNNGTC	1 cut(s)	213
AjiI	CACGTC	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	904
AluBI	AGCT	5 cut(s)	88, 199, 245, 322, 805
AluI	AGCT	5 cut(s)	88, 199, 245, 322, 805
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	965
AlwI	GGATC	8 cut(s)	36, 378, 602, 611, 615, 755, 912, 925
Aor13HI	TCCGGA	2 cut(s)	329, 505
AoxI	GGCC	1 cut(s)	947
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	2 cut(s)	43, 357
ArsI	GACNNNNNNTTYG	2 cut(s)	981, 1013
Asp700I	GAANNNNTTC	1 cut(s)	406
AspS9I	GGNCC	2 cut(s)	555, 947
AsuHPI	GGTGA	3 cut(s)	263, 402, 974
AvaII	GGWCC	1 cut(s)	555
BaeGI	GKGCMC	1 cut(s)	661
BamHI	GGATCC	2 cut(s)	607, 917
BanII	GRGCYC	1 cut(s)	201
BbsI	GAAGAC	3 cut(s)	83, 300, 746
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	2 cut(s)	392, 527
BceAI	ACGGC	2 cut(s)	923, 934
BciT130I	CCWGG	1 cut(s)	906
BcoDI	GTCTC	1 cut(s)	965
BfaI	CTAG	2 cut(s)	621, 968
BfmI	CTRYAG	1 cut(s)	693
BfuAI	ACCTGC	1 cut(s)	499
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	906
Bme18I	GGWCC	1 cut(s)	555
BmeRI	GACNNNNNGTC	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	555, 947
BmiI	GGNNCC	2 cut(s)	609, 919
BmrFI	CCNGG	1 cut(s)	906
BmrI	ACTGGG	1 cut(s)	655
BmsI	GCATC	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	655
BpiI	GAAGAC	3 cut(s)	83, 300, 746
BsaAI	YACGTR	2 cut(s)	577, 686
BsaJI	CCNNGG	3 cut(s)	351, 776, 905
BsaWI	WCCGGW	2 cut(s)	329, 505
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 500, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	911, 945
Bse1I	ACTGG	2 cut(s)	384, 661
Bse3DI	GCAATG	2 cut(s)	27, 498
BseAI	TCCGGA	2 cut(s)	329, 505
BseBI	CCWGG	1 cut(s)	906
BseDI	CCNNGG	3 cut(s)	351, 776, 905
BseGI	GGATG	2 cut(s)	172, 403
BseLI	CCNNNNNNNGG	2 cut(s)	911, 945
BseMI	GCAATG	2 cut(s)	27, 498
BseMII	CTCAG	1 cut(s)	750
BseNI	ACTGG	2 cut(s)	384, 661
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	1 cut(s)	254
BseYI	CCCAGC	1 cut(s)	944
Bsh1236I	CGCG	1 cut(s)	833
BshFI	GGCC	1 cut(s)	949
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	330, 506
BslI	CCNNNNNNNGG	2 cut(s)	911, 945
BsmAI	GTCTC	1 cut(s)	965
BsnI	GGCC	1 cut(s)	949
Bsp1286I	GDGCHC	2 cut(s)	201, 661
Bsp13I	TCCGGA	2 cut(s)	329, 505
Bsp143I	GATC	9 cut(s)	28, 161, 370, 607, 616, 747, 882, 917, 964
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	2 cut(s)	249, 833
BspANI	GGCC	1 cut(s)	949
BspCNI	CTCAG	1 cut(s)	751
BspEI	TCCGGA	2 cut(s)	329, 505
BspFNI	CGCG	1 cut(s)	833
BspLI	GGNNCC	2 cut(s)	609, 919
BspMAI	CTGCAG	1 cut(s)	697
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	8 cut(s)	36, 378, 602, 611, 615, 755, 912, 925
BsrDI	GCAATG	2 cut(s)	27, 498
BsrI	ACTGG	2 cut(s)	384, 661
BssECI	CCNNGG	3 cut(s)	351, 776, 905
BssMI	GATC	9 cut(s)	28, 161, 370, 607, 616, 747, 882, 917, 964
BssT1I	CCWWGG	2 cut(s)	351, 776
Bst2UI	CCWGG	1 cut(s)	906
Bst4CI	ACNGT	1 cut(s)	481
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBAI	YACGTR	2 cut(s)	577, 686
BstC8I	GCNNGC	2 cut(s)	247, 704
BstDEI	CTNAG	2 cut(s)	741, 759
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	172, 403
BstFNI	CGCG	1 cut(s)	833
BstKTI	GATC	9 cut(s)	31, 164, 373, 610, 619, 750, 885, 920, 967
BstMAI	GTCTC	1 cut(s)	965
BstMBI	GATC	9 cut(s)	28, 161, 370, 607, 616, 747, 882, 917, 964
BstMWI	GCNNNNNNNGC	4 cut(s)	500, 802, 850, 1014
BstNI	CCWGG	1 cut(s)	906
BstSCI	CCNGG	1 cut(s)	904
BstSFI	CTRYAG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	661
BstUI	CGCG	1 cut(s)	833
BstV1I	GCAGC	1 cut(s)	254
BstV2I	GAAGAC	3 cut(s)	83, 300, 746
BstX2I	RGATCY	5 cut(s)	28, 370, 607, 616, 917
BstYI	RGATCY	5 cut(s)	28, 370, 607, 616, 917
BsuRI	GGCC	1 cut(s)	949
BtgI	CCRYGG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	172, 403
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	2 cut(s)	247, 704
Cfr13I	GGNCC	2 cut(s)	555, 947
Csp6I	GTAC	2 cut(s)	664, 683
CviAII	CATG	3 cut(s)	232, 347, 352
CviQI	GTAC	2 cut(s)	664, 683
DdeI	CTNAG	2 cut(s)	741, 759
DpnI	GATC	9 cut(s)	30, 163, 372, 609, 618, 749, 884, 919, 966
DpnII	GATC	9 cut(s)	28, 161, 370, 607, 616, 747, 882, 917, 964
DrdI	GACNNNNNNGTC	1 cut(s)	989
DriI	GACNNNNNGTC	1 cut(s)	213
DseDI	GACNNNNNNGTC	1 cut(s)	989
Eam1105I	GACNNNNNGTC	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	351, 776
Eco24I	GRGCYC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	904
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	2 cut(s)	351, 776
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	2 cut(s)	351, 776
FaeI	CATG	3 cut(s)	235, 350, 355
FatI	CATG	3 cut(s)	231, 346, 351
FauNDI	CATATG	1 cut(s)	887
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	2 cut(s)	159, 410
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	621, 968
GluI	GCNGC	1 cut(s)	243
GsaI	CCCAGC	1 cut(s)	948
HaeIII	GGCC	1 cut(s)	949
HapII	CCGG	2 cut(s)	330, 506
Hin1II	CATG	3 cut(s)	235, 350, 355
HinfI	GANTC	4 cut(s)	208, 333, 956, 983
HpaII	CCGG	2 cut(s)	330, 506
HphI	GGTGA	3 cut(s)	263, 402, 974
Hpy166II	GTNNAC	2 cut(s)	254, 666
Hpy188I	TCNGA	6 cut(s)	68, 141, 375, 786, 955, 988
Hpy188III	TCNNGA	6 cut(s)	330, 506, 611, 758, 817, 968
Hpy8I	GTNNAC	2 cut(s)	254, 666
HpyAV	CCTTC	4 cut(s)	19, 517, 747, 905
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	4 cut(s)	415, 569, 576, 685
HpyCH4V	TGCA	6 cut(s)	242, 273, 494, 545, 695, 702
HpyF10VI	GCNNNNNNNGC	4 cut(s)	500, 802, 850, 1014
HpyF3I	CTNAG	2 cut(s)	741, 759
HpySE526I	ACGT	4 cut(s)	415, 569, 576, 685
Hsp92II	CATG	3 cut(s)	235, 350, 355
Kpn2I	TCCGGA	2 cut(s)	329, 505
Kzo9I	GATC	9 cut(s)	28, 161, 370, 607, 616, 747, 882, 917, 964
LmnI	GCTCC	3 cut(s)	85, 508, 841
Lsp1109I	GCAGC	1 cut(s)	254
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	621, 968
MaeII	ACGT	4 cut(s)	415, 569, 576, 685
MaeIII	GTNAC	5 cut(s)	362, 437, 516, 565, 845
MalI	GATC	9 cut(s)	30, 163, 372, 609, 618, 749, 884, 919, 966
MboI	GATC	9 cut(s)	28, 161, 370, 607, 616, 747, 882, 917, 964
MboII	GAAGA	6 cut(s)	88, 304, 305, 626, 746, 881
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	5 cut(s)	28, 370, 607, 616, 917
MhlI	GDGCHC	2 cut(s)	201, 661
MluCI	AATT	5 cut(s)	43, 225, 357, 648, 807
MlyI	GAGTC	4 cut(s)	202, 342, 950, 977
MmeI	TCCRAC	3 cut(s)	340, 463, 978
MroI	TCCGGA	2 cut(s)	329, 505
MroXI	GAANNNNTTC	1 cut(s)	406
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	2 cut(s)	245, 322
MspI	CCGG	2 cut(s)	330, 506
MspR9I	CCNGG	1 cut(s)	906
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	906
MvnI	CGCG	1 cut(s)	833
MwoI	GCNNNNNNNGC	4 cut(s)	500, 802, 850, 1014
NcoI	CCATGG	1 cut(s)	351
NdeI	CATATG	1 cut(s)	887
NdeII	GATC	9 cut(s)	28, 161, 370, 607, 616, 747, 882, 917, 964
NlaIII	CATG	3 cut(s)	235, 350, 355
NlaIV	GGNNCC	2 cut(s)	609, 919
NmuCI	GTSAC	4 cut(s)	362, 516, 565, 845
PaqCI	CACCTGC	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	406
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	4 cut(s)	202, 341, 950, 977
PpsI	GAGTC	4 cut(s)	202, 341, 950, 977
Ppu21I	YACGTR	2 cut(s)	577, 686
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	904
PspFI	CCCAGC	1 cut(s)	944
PspGI	CCWGG	1 cut(s)	904
PspN4I	GGNNCC	2 cut(s)	609, 919
PspPI	GGNCC	2 cut(s)	555, 947
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	5 cut(s)	28, 370, 607, 616, 917
PvuII	CAGCTG	2 cut(s)	245, 322
RsaI	GTAC	2 cut(s)	665, 684
RsaNI	GTAC	2 cut(s)	664, 683
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	9 cut(s)	28, 161, 370, 607, 616, 747, 882, 917, 964
Sau96I	GGNCC	2 cut(s)	555, 947
SchI	GAGTC	4 cut(s)	202, 342, 950, 977
ScrFI	CCNGG	1 cut(s)	906
SduI	GDGCHC	2 cut(s)	201, 661
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	693
SinI	GGWCC	1 cut(s)	555
Sse9I	AATT	5 cut(s)	43, 225, 357, 648, 807
SsiI	CCGC	2 cut(s)	249, 833
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	2 cut(s)	621, 968
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	904
StyI	CCWWGG	2 cut(s)	351, 776
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	4 cut(s)	418, 572, 579, 688
TaqI	TCGA	2 cut(s)	816, 993
TasI	AATT	5 cut(s)	43, 225, 357, 648, 807
TatI	WGTACW	1 cut(s)	663
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	4 cut(s)	362, 516, 565, 845
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	4 cut(s)	362, 516, 565, 845
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	2 cut(s)	535, 1011
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	555
XapI	RAATTY	2 cut(s)	43, 357
XbaI	TCTAGA	1 cut(s)	967
XmnI	GAANNNNTTC	1 cut(s)	406
XspI	CTAG	2 cut(s)	621, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.