Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009394

Physical Location & Seq

Genomic Coordinates Forward (+)

8989440 .. 8996174

Gene Structure 6735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1066700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1794 bp

ATGGCGAGGCCTAATCAGGAAGCGATCGAGACCTTCATCAGCATCACCGGCGCTTCCGAAGCCATAGCCGTGCAAAAGCTCGAGGAGCATGGTGGCGATCTCAATGCAGCTGCAAATGCATACTTTACTGAAGGAGATAGAAGCACATCGGTGAATGTGCATGATACACCTGTTTCAGCTCAAGACGATTTTATGGATATCGATGATCCGGTTCCTGTTCGATCTCGGAGAGATCCTTTATCGCTTCCATCTGCAACTGGTGATGTGAATCCCTTTTCTATTCTTATTCCAGATTTTGGTAGAACCATATTTGATAGTGGTACACATTTTACAAACCGTACACCATTTGTTACTCATCCAAGAGAGGTGAGGGAGATCCCCATTGAAGTCAAAGATGGCGATCATCCATCTGGCCATTCTGGCCATGCTCCTATCATTGATGATGTCACTGGAACAGAGGAGGCAGATGGCCCAGGTATCCCTGGCACTGTTATAATCGATGAGGAAGATGATGACGATATTCAAGCTGCCCCAGCTGTTCAGGCTGGGCAAAGGAGTGGACCGCAAGATATCTCTTCAGGTGATGGATATCATCACCGAAATTTTGGATCTAGTGCTCCTCGATTTGATGATCCGCAGGATTATAGCAATGATATTGAAGAAGAAATGATTCGAGCTGCAATCGAGGCTTCAAAACAGGAAGTTGAAGAAAACCAACCAAATCAACAATTTGGTGCTCCAAATTTTGATGAAAATGAACCTCAGCAAAGGCCACCTCAGCTAGAGGATCCTGAACTTGCACATGCAGTTTCATTGTCACTGAAGACAGCAGAGCAAGAGAAAGCATTGCATGGCCAGGGACAAAATGTTGGCGTATCATATATTGGGGCTTCTAAGGCAGCAGAGGTGGAGCTGGAAAATTTAGCAGCATCAAATGGAAGGTTGGAGGCAGGAAGTTCATCCATCCAAGAAGAAACTGAAGATGTGGAGGAGCAGCCTCTTGTCAGACACAGGTCCAGGCGCATGTCTTCTGGCTCTGTGGAGACTGCAAAAGAAGTTGGAGCTGATGAGGATAGTGCACCTTCAAGTCCTGAAGAGCAGGATATGGATAATCATCCTAGGCACAATGGCGGTGACTTCCCTTCAGATGAGTGGGGAGGAATTTCTTCAGAGGAGCACGACGAAGCAGTGATGCTTGAGGCTGCAATGTTTGGTGGAATTCCTGAAGGGACTGGATATCACCGTCCCTACACACCACATCATTTTATGCGGCCTGACAGTTCATACGTCCGACCATCACCTCGTCCTCCTTCACCCTCTCTTACAGCACAGCGGTTGATACGTGAACAACAGGACGATGAATATCTTGCATCACTTCAAGCTGACAGAGAAAAAGAATTGAAGGCTATTGAGGAAGCTGAAGCTCGTCGTGAAGAAGACAGACTAAAAGAGGAAGAGTCTCGAAGGAAAATCAAGGAGGAGCAGGAATTGGAGAGACAATTAGCAGCAAAAGAAGCTACTCTCCCTCAAGAACCAGCATCAGATGATGAGAATGCTGTAACCCTACTGGTGCGAATGCCAGATGGTAGCCGCCATGGGCGTCGATTTCTCAGGACAGACAAGCTGCAGTCTCTTTTCGACTTTATTGATATTGGCAGAAGGGTCAAACCCGGCTCTTACAGAGTGGTGAGGCCATTCCCCAGGCGCGCTTTTAGCGATGGAGAAAGTGCATTGACATTGAATGAACTCGGGCTTACCAGCAAACAAGAAGCTTTGTTTTTGGAGTCGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0008150 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA_4 UBX

Protein Analysis

598

Amino Acids

65.9

Weight (kDa)

4.58

Isoelectric Point (pI)

61.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_8	PF22566	5 - 45	1.5e-06	UBA-like domain
UBA_4	PF14555	6 - 47	1.2e-13	UBA-like domain
UBX	PF00789	516 - 595	2.5e-18	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11740 AT4G11740 AT4G23040
fragaria_vesca	FvH4_5g01560
malus_domestica	MD04G1066700.v1.1 MD06G1073600.v1.1
prunus_persica	Prupe.5G091800_v2.0.a1 Prupe.5G091800_v2.0.a1
pyrus_communis	pycom04g05990 pycom06g07280
rosa_chinensis	RchiOBHm_Chr7g0199121
rosa_laevigata	RLG00000003813
rosa_multiflora	Rmu_sc0006266.1_g000051
rosa_roxburghii	Rroxscaffold_3G00257060
rosa_rugosa	Rorug07G0052800 Rorug07G0052900
rosa_samantha	Rh7AG176300 Rh7BG179800 Rh7CG185400 Rh7DG179300
rosa_wichuraiana	Rw7G015470 Rw7G015500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccII	CGCG	1 cut(s)	1707
AciI	CCGC	6 cut(s)	563, 635, 1131, 1270, 1333, 1591
AclWI	GGATC	7 cut(s)	200, 227, 370, 616, 626, 782, 795
AcoI	YGGCCR	3 cut(s)	412, 421, 853
AcsI	RAATTY	5 cut(s)	601, 742, 919, 1161, 1218
AcuI	CTGAAG	9 cut(s)	150, 561, 842, 999, 1113, 1128, 1152, 1245, 1440
AcyI	GRCGYC	1 cut(s)	1600
AfaI	GTAC	2 cut(s)	322, 340
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	9 cut(s)	386, 524, 659, 693, 707, 1086, 1379, 1402, 1741
AjnI	CCWGG	5 cut(s)	472, 481, 855, 1016, 1700
AleI	CACNNNNGTG	1 cut(s)	149
Alw21I	GWGCWC	4 cut(s)	619, 739, 1081, 1179
Alw26I	GTCTC	5 cut(s)	23, 1037, 1464, 1489, 1635
Alw44I	GTGCAC	1 cut(s)	1077
AlwI	GGATC	7 cut(s)	200, 227, 370, 616, 626, 782, 795
Ama87I	CYCGRG	2 cut(s)	80, 1748
AoxI	GGCC	8 cut(s)	8, 412, 421, 469, 770, 853, 1271, 1691
ApaLI	GTGCAC	1 cut(s)	1077
ApoI	RAATTY	5 cut(s)	601, 742, 919, 1161, 1218
Asp700I	GAANNNNTTC	2 cut(s)	669, 1165
AspA2I	CCTAGG	1 cut(s)	1118
AspLEI	GCGC	4 cut(s)	53, 1023, 1707, 1709
AspS9I	GGNCC	3 cut(s)	470, 560, 1014
AsuC2I	CCSGG	1 cut(s)	1671
AvaI	CYCGRG	2 cut(s)	80, 1748
AvaII	GGWCC	2 cut(s)	560, 1014
AvrII	CCTAGG	1 cut(s)	1118
BaeGI	GKGCMC	1 cut(s)	1081
BaeI	ACNNNNGTAYC	2 cut(s)	156, 189
BalI	TGGCCA	3 cut(s)	414, 423, 855
BamHI	GGATCC	1 cut(s)	787
BbsI	GAAGAC	3 cut(s)	830, 1020, 1443
Bbv12I	GWGCWC	4 cut(s)	619, 739, 1081, 1179
BbvCI	CCTCAGC	2 cut(s)	762, 777
BccI	CCATC	9 cut(s)	256, 389, 415, 461, 578, 971, 1303, 1577, 1712
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	5 cut(s)	474, 483, 857, 1018, 1702
BciVI	GTATCC	1 cut(s)	488
BcnI	CCSGG	1 cut(s)	1671
BcoDI	GTCTC	5 cut(s)	23, 1037, 1464, 1489, 1635
BfaI	CTAG	3 cut(s)	612, 782, 1119
BfmI	CTRYAG	1 cut(s)	1625
BfoI	RGCGCY	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	488
BglI	GCCNNNNNGGC	1 cut(s)	420
BlnI	CCTAGG	1 cut(s)	1118
Bme1390I	CCNGG	6 cut(s)	474, 483, 857, 1018, 1671, 1702
Bme18I	GGWCC	2 cut(s)	560, 1014
BmeT110I	CYCGRG	2 cut(s)	80, 1748
BmgT120I	GGNCC	3 cut(s)	470, 560, 1014
BmiI	GGNNCC	2 cut(s)	213, 789
BmrFI	CCNGG	6 cut(s)	474, 483, 857, 1018, 1671, 1702
BmsI	GCATC	5 cut(s)	51, 938, 1182, 1379, 1547
BoxI	GACNNNNGTC	1 cut(s)	1012
BpiI	GAAGAC	3 cut(s)	830, 1020, 1443
Bpu10I	CCTNAGC	2 cut(s)	762, 777
BpuEI	CTTGAG	3 cut(s)	165, 1217, 1512
BpuMI	CCSGG	1 cut(s)	1671
Bsa29I	ATCGAT	2 cut(s)	201, 498
BsaAI	YACGTR	1 cut(s)	1343
BsaBI	GATNNNNATC	5 cut(s)	267, 399, 588, 1113, 1362
BsaHI	GRCGYC	1 cut(s)	1600
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	6 cut(s)	472, 481, 856, 1118, 1594, 1700
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	4 cut(s)	262, 454, 1237, 1572
Bse3DI	GCAATG	3 cut(s)	655, 845, 1212
Bse8I	GATNNNNATC	5 cut(s)	267, 399, 588, 1113, 1362
BseBI	CCWGG	5 cut(s)	474, 483, 857, 1018, 1702
BseCI	ATCGAT	2 cut(s)	201, 498
BseDI	CCNNGG	6 cut(s)	472, 481, 856, 1118, 1594, 1700
BseGI	GGATG	5 cut(s)	355, 403, 959, 963, 1114
BseJI	GATNNNNATC	5 cut(s)	267, 399, 588, 1113, 1362
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	3 cut(s)	655, 845, 1212
BseMII	CTCAG	3 cut(s)	776, 791, 1624
BseNI	ACTGG	4 cut(s)	262, 454, 1237, 1572
BsePI	GCGCGC	1 cut(s)	1705
BseRI	GAGGAG	6 cut(s)	98, 473, 609, 1004, 1187, 1493
BseSI	GKGCMC	1 cut(s)	1081
BseYI	CCCAGC	2 cut(s)	532, 545
Bsh1236I	CGCG	1 cut(s)	1707
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	8 cut(s)	10, 414, 423, 471, 772, 855, 1273, 1693
BshVI	ATCGAT	2 cut(s)	201, 498
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	4 cut(s)	619, 739, 1081, 1179
BsiHKCI	CYCGRG	2 cut(s)	80, 1748
BsiSI	CCGG	3 cut(s)	48, 209, 1671
BslFI	GGGAC	3 cut(s)	873, 1230, 1243
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	5 cut(s)	23, 1037, 1464, 1489, 1635
BsmFI	GGGAC	3 cut(s)	873, 1230, 1243
BsmI	GAATGC	2 cut(s)	1558, 1581
BsnI	GGCC	8 cut(s)	10, 414, 423, 471, 772, 855, 1273, 1693
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	2 cut(s)	80, 1748
Bsp1286I	GDGCHC	4 cut(s)	619, 739, 1081, 1179
Bsp19I	CCATGG	1 cut(s)	1594
BspACI	CCGC	6 cut(s)	563, 635, 1131, 1270, 1333, 1591
BspANI	GGCC	8 cut(s)	10, 414, 423, 471, 772, 855, 1273, 1693
BspCNI	CTCAG	3 cut(s)	775, 790, 1623
BspDI	ATCGAT	2 cut(s)	201, 498
BspFNI	CGCG	1 cut(s)	1707
BspLI	GGNNCC	2 cut(s)	213, 789
BspMAI	CTGCAG	1 cut(s)	1629
BspPI	GGATC	7 cut(s)	200, 227, 370, 616, 626, 782, 795
BspQI	GCTCTTC	1 cut(s)	1089
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	3 cut(s)	655, 845, 1212
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	4 cut(s)	262, 454, 1237, 1572
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	6 cut(s)	472, 481, 856, 1118, 1594, 1700
BssHII	GCGCGC	1 cut(s)	1705
BssNI	GRCGYC	1 cut(s)	1600
BssT1I	CCWWGG	2 cut(s)	1118, 1594
Bst2UI	CCWGG	5 cut(s)	474, 483, 857, 1018, 1702
Bst4CI	ACNGT	4 cut(s)	338, 490, 1244, 1280
Bst6I	CTCTTC	3 cut(s)	580, 1089, 1449
BstACI	GRCGYC	1 cut(s)	1600
BstBAI	YACGTR	1 cut(s)	1343
BstC8I	GCNNGC	1 cut(s)	1707
BstDEI	CTNAG	4 cut(s)	762, 777, 894, 1610
BstDSI	CCRYGG	1 cut(s)	1594
BstF5I	GGATG	5 cut(s)	355, 403, 959, 963, 1114
BstFNI	CGCG	1 cut(s)	1707
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	4 cut(s)	53, 1023, 1707, 1709
BstMAI	GTCTC	5 cut(s)	23, 1037, 1464, 1489, 1635
BstMCI	CGRYCG	1 cut(s)	27
BstNI	CCWGG	5 cut(s)	474, 483, 857, 1018, 1702
BstNSI	RCATGY	2 cut(s)	806, 1027
BstPAI	GACNNNNGTC	1 cut(s)	1012
BstSCI	CCNGG	6 cut(s)	472, 481, 855, 1016, 1669, 1700
BstSFI	CTRYAG	1 cut(s)	1625
BstSLI	GKGCMC	1 cut(s)	1081
BstUI	CGCG	1 cut(s)	1707
BstV2I	GAAGAC	3 cut(s)	830, 1020, 1443
BstX2I	RGATCY	4 cut(s)	232, 375, 608, 787
BstYI	RGATCY	4 cut(s)	232, 375, 608, 787
Bsu15I	ATCGAT	2 cut(s)	201, 498
BsuI	GTATCC	1 cut(s)	488
BsuRI	GGCC	8 cut(s)	10, 414, 423, 471, 772, 855, 1273, 1693
BsuTUI	ATCGAT	2 cut(s)	201, 498
BtgI	CCRYGG	1 cut(s)	1594
BtgZI	GCGATG	1 cut(s)	1731
BtsCI	GGATG	5 cut(s)	355, 403, 959, 963, 1114
BtsI	GCAGTG	1 cut(s)	1194
BtsIMutI	CAGTG	4 cut(s)	447, 486, 818, 1194
Cac8I	GCNNGC	1 cut(s)	1707
CfoI	GCGC	4 cut(s)	53, 1023, 1707, 1709
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	3 cut(s)	470, 560, 1014
ClaI	ATCGAT	2 cut(s)	201, 498
CseI	GACGC	1 cut(s)	1589
Csp6I	GTAC	2 cut(s)	321, 339
CviAII	CATG	7 cut(s)	89, 161, 425, 803, 851, 1024, 1595
CviQI	GTAC	2 cut(s)	321, 339
DdeI	CTNAG	4 cut(s)	762, 777, 894, 1610
EaeI	YGGCCR	3 cut(s)	412, 421, 853
Eam1104I	CTCTTC	3 cut(s)	580, 1089, 1449
EarI	CTCTTC	3 cut(s)	580, 1089, 1449
Eco130I	CCWWGG	2 cut(s)	1118, 1594
Eco147I	AGGCCT	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	23
Eco32I	GATATC	4 cut(s)	199, 571, 590, 1238
Eco47I	GGWCC	2 cut(s)	560, 1014
Eco57I	CTGAAG	9 cut(s)	150, 561, 842, 999, 1113, 1128, 1152, 1245, 1440
Eco88I	CYCGRG	2 cut(s)	80, 1748
EcoRI	GAATTC	1 cut(s)	1218
EcoRII	CCWGG	5 cut(s)	472, 481, 855, 1016, 1700
EcoRV	GATATC	4 cut(s)	199, 571, 590, 1238
EcoT14I	CCWWGG	2 cut(s)	1118, 1594
EcoT22I	ATGCAT	1 cut(s)	121
ErhI	CCWWGG	2 cut(s)	1118, 1594
FaeI	CATG	7 cut(s)	92, 164, 428, 806, 854, 1027, 1598
FaqI	GGGAC	3 cut(s)	873, 1230, 1243
FatI	CATG	7 cut(s)	88, 160, 424, 802, 850, 1023, 1594
FokI	GGATG	5 cut(s)	342, 390, 946, 950, 1101
FspBI	CTAG	3 cut(s)	612, 782, 1119
GlaI	GCGC	4 cut(s)	52, 1022, 1706, 1708
GsaI	CCCAGC	2 cut(s)	536, 549
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	8 cut(s)	10, 414, 423, 471, 772, 855, 1273, 1693
HapII	CCGG	3 cut(s)	48, 209, 1671
HgaI	GACGC	1 cut(s)	1589
HhaI	GCGC	4 cut(s)	53, 1023, 1707, 1709
Hin1I	GRCGYC	1 cut(s)	1600
Hin1II	CATG	7 cut(s)	92, 164, 428, 806, 854, 1027, 1598
Hin6I	GCGC	4 cut(s)	51, 1021, 1705, 1707
HinP1I	GCGC	4 cut(s)	51, 1021, 1705, 1707
HindIII	AAGCTT	1 cut(s)	1770
HinfI	GANTC	4 cut(s)	268, 670, 1457, 1784
HpaII	CCGG	3 cut(s)	48, 209, 1671
Hpy166II	GTNNAC	5 cut(s)	323, 341, 560, 1079, 1346
Hpy188I	TCNGA	7 cut(s)	58, 228, 1007, 1147, 1171, 1292, 1543
Hpy8I	GTNNAC	5 cut(s)	323, 341, 560, 1079, 1346
Hpy99I	CGWCG	3 cut(s)	1184, 1431, 1605
HpyCH4III	ACNGT	4 cut(s)	338, 490, 1244, 1280
HpyCH4IV	ACGT	2 cut(s)	1287, 1342
HpyF3I	CTNAG	4 cut(s)	762, 777, 894, 1610
HpySE526I	ACGT	2 cut(s)	1287, 1342
Hsp92I	GRCGYC	1 cut(s)	1600
Hsp92II	CATG	7 cut(s)	92, 164, 428, 806, 854, 1027, 1598
HspAI	GCGC	4 cut(s)	51, 1021, 1705, 1707
LguI	GCTCTTC	1 cut(s)	1089
LmnI	GCTCC	9 cut(s)	85, 433, 622, 742, 910, 991, 1061, 1174, 1480
LweI	GCATC	5 cut(s)	51, 938, 1182, 1379, 1547
MaeI	CTAG	3 cut(s)	612, 782, 1119
MaeII	ACGT	2 cut(s)	1287, 1342
MaeIII	GTNAC	5 cut(s)	349, 445, 816, 1133, 1558
MflI	RGATCY	4 cut(s)	232, 375, 608, 787
MhlI	GDGCHC	4 cut(s)	619, 739, 1081, 1179
MlsI	TGGCCA	3 cut(s)	414, 423, 855
MluCI	AATT	9 cut(s)	601, 728, 742, 919, 1161, 1218, 1397, 1487, 1499
MluNI	TGGCCA	3 cut(s)	414, 423, 855
MlyI	GAGTC	2 cut(s)	1466, 1793
MmeI	TCCRAC	3 cut(s)	924, 1039, 1315
Mox20I	TGGCCA	3 cut(s)	414, 423, 855
Mph1103I	ATGCAT	1 cut(s)	121
MroXI	GAANNNNTTC	2 cut(s)	669, 1165
MscI	TGGCCA	3 cut(s)	414, 423, 855
MslI	CAYNNNNRTG	2 cut(s)	68, 149
Msp20I	TGGCCA	3 cut(s)	414, 423, 855
MspA1I	CMGCKG	3 cut(s)	110, 536, 1333
MspI	CCGG	3 cut(s)	48, 209, 1671
MspR9I	CCNGG	6 cut(s)	474, 483, 857, 1018, 1671, 1702
Mva1269I	GAATGC	2 cut(s)	1558, 1581
MvaI	CCWGG	5 cut(s)	474, 483, 857, 1018, 1702
MvnI	CGCG	1 cut(s)	1707
NciI	CCSGG	1 cut(s)	1671
NcoI	CCATGG	1 cut(s)	1594
NlaIII	CATG	7 cut(s)	92, 164, 428, 806, 854, 1027, 1598
NlaIV	GGNNCC	2 cut(s)	213, 789
NmuCI	GTSAC	3 cut(s)	445, 816, 1133
NsiI	ATGCAT	1 cut(s)	121
NspI	RCATGY	2 cut(s)	806, 1027
OliI	CACNNNNGTG	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	80
PauI	GCGCGC	1 cut(s)	1705
PceI	AGGCCT	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	1089
PctI	GAATGC	2 cut(s)	1558, 1581
PdmI	GAANNNNTTC	2 cut(s)	669, 1165
PfeI	GAWTC	2 cut(s)	268, 670
PflMI	CCANNNNNTGG	1 cut(s)	296
Ple19I	CGATCG	1 cut(s)	27
PleI	GAGTC	2 cut(s)	1465, 1792
PpsI	GAGTC	2 cut(s)	1465, 1792
Ppu21I	YACGTR	1 cut(s)	1343
PshAI	GACNNNNGTC	1 cut(s)	1012
PsiI	TTATAA	1 cut(s)	494
Psp6I	CCWGG	5 cut(s)	472, 481, 855, 1016, 1700
PspFI	CCCAGC	2 cut(s)	532, 545
PspGI	CCWGG	5 cut(s)	472, 481, 855, 1016, 1700
PspN4I	GGNNCC	2 cut(s)	213, 789
PspPI	GGNCC	3 cut(s)	470, 560, 1014
PspXI	VCTCGAGB	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	1629
PsuI	RGATCY	4 cut(s)	232, 375, 608, 787
PteI	GCGCGC	1 cut(s)	1705
PvuI	CGATCG	1 cut(s)	27
PvuII	CAGCTG	2 cut(s)	110, 536
RsaI	GTAC	2 cut(s)	322, 340
RsaNI	GTAC	2 cut(s)	321, 339
RseI	CAYNNNNRTG	2 cut(s)	68, 149
SapI	GCTCTTC	1 cut(s)	1089
Sau96I	GGNCC	3 cut(s)	470, 560, 1014
SchI	GAGTC	2 cut(s)	1466, 1793
ScrFI	CCNGG	6 cut(s)	474, 483, 857, 1018, 1671, 1702
SduI	GDGCHC	4 cut(s)	619, 739, 1081, 1179
SfaNI	GCATC	5 cut(s)	51, 938, 1182, 1379, 1547
SfcI	CTRYAG	1 cut(s)	1625
SfiI	GGCCNNNNNGGCC	1 cut(s)	420
Sfr274I	CTCGAG	1 cut(s)	80
SgrAI	CRCCGGYG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	560, 1014
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	68, 149
SmlI	CTYRAG	4 cut(s)	80, 180, 1196, 1527
SmoI	CTYRAG	4 cut(s)	80, 180, 1196, 1527
Sse9I	AATT	9 cut(s)	601, 728, 742, 919, 1161, 1218, 1397, 1487, 1499
SseBI	AGGCCT	1 cut(s)	10
SsiI	CCGC	6 cut(s)	563, 635, 1131, 1270, 1333, 1591
SspMI	CTAG	3 cut(s)	612, 782, 1119
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	6 cut(s)	472, 481, 855, 1016, 1669, 1700
StyI	CCWWGG	2 cut(s)	1118, 1594
TaaI	ACNGT	4 cut(s)	338, 490, 1244, 1280
TaiI	ACGT	2 cut(s)	1290, 1345
TasI	AATT	9 cut(s)	601, 728, 742, 919, 1161, 1218, 1397, 1487, 1499
TauI	GCSGC	2 cut(s)	1273, 1593
TfiI	GAWTC	2 cut(s)	268, 670
TscAI	CASTG	4 cut(s)	454, 493, 825, 1194
TseFI	GTSAC	3 cut(s)	445, 816, 1133
Tsp45I	GTSAC	3 cut(s)	445, 816, 1133
TspDTI	ATGAA	8 cut(s)	25, 765, 771, 801, 948, 1272, 1374, 1758
TspRI	CASTG	4 cut(s)	454, 493, 825, 1194
Van91I	CCANNNNNTGG	1 cut(s)	296
VneI	GTGCAC	1 cut(s)	1077
VpaK11BI	GGWCC	2 cut(s)	560, 1014
XapI	RAATTY	5 cut(s)	601, 742, 919, 1161, 1218
XceI	RCATGY	2 cut(s)	806, 1027
XhoI	CTCGAG	1 cut(s)	80
XmaJI	CCTAGG	1 cut(s)	1118
XmnI	GAANNNNTTC	2 cut(s)	669, 1165
XspI	CTAG	3 cut(s)	612, 782, 1119
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.