Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009394

Physical Location & Seq

Genomic Coordinates Reverse (-)

53028889 .. 53033710

Gene Structure 4822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003813

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1782 bp

ATGGCGACGCCTAATCAGGAAGCAATCGACACCTTCATCAGCATCACTGGCGCCACCGACGCCGCCGCCGCGCGAAAGCTCGAGGAGCATGGAGGCAATCTCAATGAAGCTGTGAATGCATATTTCAGTGAAGGAGATAGAAACACATCAGTGAATGTGCATGAGACACCTGTTCTTGATCAAGATGATTTCATGGACATAGATGATCCAGATCTAGTTGGATCTCATAGAAATCCTTTACCACTTCTAGCTGCAGCCAGAGATATCAATCCATTTTCTTATCTTGAGAACCTTGATAGAAGTGTCTTTGAAAGTAGTACTGATATAACAAACCGTACACCATTTGTTACTCATCCAAGAGAAGTGAGGGAAATCCCCATAGAAGTCAAGGATGGCAGTCATTCATCTGGTCATTCTGACCATGCTCCTAAAATTGATGATGTTACTGGAACAGTGGAGGCATACGGCCCAGGTGTCAGTGGAACGGTTATAGTTGATGATGACGATGATGACGTTGCAGCTGCCCCAACTGTTCAGGCAGGGCAAGGGAGCGGACCAAGAGATAACTCTTCAGGTGATGGATCTCATCACCAGACTTTTGCACCTAGTGCTCCTCGATTTGATGATCCTAGCAATGATATTGAAGAACAAATGATTCGAGCTGCTATTGAGGCTTCAAAACGGGAGGTTGAGGCAAACCACTCAAATCACCAATTTGGTGTACCAAATGAGTTTGATGATATTGAGCCTGAGCAAAGACAGTCTCACCTAGAGGATCCTGAACTTGCACATGTAGTTTCCTTGTCACTGAAGACAGCAGAGCAAGAGAAAGCATTCCGCGAGCAGGGGGGAAATGTTAGACCCGCAGAGATGGGTGCTTCTAAGGAAGCTGAGGTGGAGCTGGCTAAAGTAGCAGCACCAAATGGAAGCTTGGAGGCAGGAAGCTCATCTATCAGAGATGATACTGAAGATGTGGAGGAGCAGCCTCTTGTCAGGCACAGGTCCAGGCGCATGCCTCCTGGGTCTGTGGAGTCTTCCAAAGAATTTGGACCTAGTGAGACTAGCACACCTTCTAGTCCTGGAGAGCAGGATATGGGTAATCATCCTCGTCATGATGGCGGTGCCTTCCCTTCTGACGAGTGGGGAGGCATGTCTTCACAGGAGCATGACGAAGCAGTGATGCTTGAGGCTGCAATGTTTGGTGGAATCCCTGAAGGGTCTGGATATCGCATTCCCTATGCACCTCATCAATTTATGCGACCAGAGAGTCCGTATCCCCTGCCAGTACCTCGTCCCCCATCACCCTCTCTGACGGCACAGCGAATGATACGGGAACAACAGGATGATGAATATCTTGCATCACTGCAAGCTGACAGAGAAAAGGAACTGAAGGCTATTGAGGAAGCTGAAGCTCGTCGCGAAGCAGAAAGACAAGAAGAGGAAGAATCTCGGAGGAAAGTTGAGGAGGAGCAGGAATTGGAGAGACAATTAGCAGCAAAAGAAGCTACTCTCCCTCAAGAACCAGCATCTGATGATGTGAATGCTGTAACCCTTCTGGTGCGAATGCCAGATGGCAGCCGCCATGGTCGTCGATTTCTTAAGACTGATAAGTTGCAGTCTCTTTTCAACTTCATAGATATTGGCAGAAGAGTGAAACCCGGCTCTTACAGAGTGGTGAGGCCGTTCCCTAGGCGTGCTTTCAGCGATGGAGACAGTGCATTGACGCTGAATGAACTTGGCCTGACCAGCAAGCAAGAAGCTTTGTTTTTGGAGTTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0008150 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA_4 UBX

Protein Analysis

594

Amino Acids

65.2

Weight (kDa)

4.64

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_4	PF14555	6 - 47	5.2e-13	UBA-like domain
UBX	PF00789	513 - 591	1.1e-18	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11740 AT4G11740 AT4G23040
fragaria_vesca	FvH4_5g01560
malus_domestica	MD04G1066700.v1.1 MD06G1073600.v1.1
prunus_persica	Prupe.5G091800_v2.0.a1 Prupe.5G091800_v2.0.a1
pyrus_communis	pycom04g05990 pycom06g07280
rosa_chinensis	RchiOBHm_Chr7g0199121
rosa_laevigata	RLG00000003813
rosa_multiflora	Rmu_sc0006266.1_g000051
rosa_roxburghii	Rroxscaffold_3G00257060
rosa_rugosa	Rorug07G0052800 Rorug07G0052900
rosa_samantha	Rh7AG176300 Rh7BG179800 Rh7CG185400 Rh7DG179300
rosa_wichuraiana	Rw7G015470 Rw7G015500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1266
AccB1I	GGYRCC	2 cut(s)	50, 1121
AccBSI	CCGCTC	1 cut(s)	552
AccII	CGCG	4 cut(s)	71, 73, 840, 1419
AciI	CCGC	8 cut(s)	63, 66, 69, 552, 838, 864, 1119, 1579
AclWI	GGATC	6 cut(s)	200, 229, 589, 620, 770, 783
AcsI	RAATTY	1 cut(s)	1043
AcuI	CTGAAG	6 cut(s)	555, 830, 987, 1233, 1409, 1428
AcyI	GRCGYC	3 cut(s)	8, 51, 60
AdeI	CACNNNGTG	1 cut(s)	608
AfaI	GTAC	4 cut(s)	319, 337, 723, 1287
AfiI	CCNNNNNNNGG	1 cut(s)	844
AflII	CTTAAG	1 cut(s)	1598
AflIII	ACRYGT	1 cut(s)	790
AgsI	TTSAA	4 cut(s)	311, 644, 678, 1627
AjnI	CCWGG	4 cut(s)	469, 1004, 1018, 1078
AleI	CACNNNNGTG	1 cut(s)	149
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	6 cut(s)	158, 768, 1052, 1477, 1623, 1704
AlwI	GGATC	6 cut(s)	200, 229, 589, 620, 770, 783
AlwNI	CAGNNNCTG	1 cut(s)	1529
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	3 cut(s)	466, 1679, 1738
ApoI	RAATTY	1 cut(s)	1043
Asp700I	GAANNNNTTC	1 cut(s)	833
AspA2I	CCTAGG	1 cut(s)	1688
AspLEI	GCGC	3 cut(s)	53, 73, 1011
AspS9I	GGNCC	4 cut(s)	467, 554, 1002, 1049
AsuC2I	CCSGG	1 cut(s)	1659
AsuHPI	GGTGA	6 cut(s)	581, 587, 701, 758, 1293, 1687
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	3 cut(s)	554, 1002, 1049
AvrII	CCTAGG	1 cut(s)	1688
BamHI	GGATCC	1 cut(s)	775
BanI	GGYRCC	2 cut(s)	50, 1121
BbsI	GAAGAC	3 cut(s)	818, 1026, 1146
Bbv12I	GWGCWC	1 cut(s)	613
BbvCI	CCTCAGC	1 cut(s)	891
BccI	CCATC	7 cut(s)	386, 572, 865, 1109, 1306, 1565, 1700
BceAI	ACGGC	3 cut(s)	481, 1329, 1666
BciT130I	CCWGG	4 cut(s)	471, 1006, 1020, 1080
BciVI	GTATCC	1 cut(s)	1284
BclI	TGATCA	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	1659
BcoDI	GTCTC	6 cut(s)	158, 768, 1052, 1477, 1623, 1704
BfaI	CTAG	9 cut(s)	215, 248, 606, 630, 770, 1053, 1062, 1074, 1689
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	1598
BfuI	GTATCC	1 cut(s)	1284
BglII	AGATCT	1 cut(s)	211
BlnI	CCTAGG	1 cut(s)	1688
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	5 cut(s)	471, 1006, 1020, 1080, 1659
Bme18I	GGWCC	3 cut(s)	554, 1002, 1049
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	4 cut(s)	467, 554, 1002, 1049
BmiI	GGNNCC	3 cut(s)	52, 777, 1123
BmrFI	CCNGG	5 cut(s)	471, 1006, 1020, 1080, 1659
BmsI	GCATC	4 cut(s)	51, 1170, 1367, 1535
BpiI	GAAGAC	3 cut(s)	818, 1026, 1146
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
BpmI	CTGGAG	1 cut(s)	1101
Bpu10I	CCTNAGC	2 cut(s)	750, 891
BpuEI	CTTGAG	3 cut(s)	305, 1205, 1500
BpuMI	CCSGG	1 cut(s)	1659
BsaBI	GATNNNNATC	3 cut(s)	210, 267, 1350
BsaHI	GRCGYC	3 cut(s)	8, 51, 60
BsaJI	CCNNGG	4 cut(s)	469, 1019, 1582, 1688
Bsc4I	CCNNNNNNNGG	1 cut(s)	844
Bse1I	ACTGG	3 cut(s)	52, 451, 1283
Bse3DI	GCAATG	2 cut(s)	640, 1200
Bse8I	GATNNNNATC	3 cut(s)	210, 267, 1350
BseBI	CCWGG	4 cut(s)	471, 1006, 1020, 1080
BseDI	CCNNGG	4 cut(s)	469, 1019, 1582, 1688
BseGI	GGATG	4 cut(s)	352, 397, 1102, 1348
BseJI	GATNNNNATC	3 cut(s)	210, 267, 1350
BseLI	CCNNNNNNNGG	1 cut(s)	844
BseMI	GCAATG	2 cut(s)	640, 1200
BseMII	CTCAG	2 cut(s)	741, 882
BseNI	ACTGG	3 cut(s)	52, 451, 1283
BseRI	GAGGAG	5 cut(s)	98, 603, 992, 1478, 1481
Bsh1236I	CGCG	4 cut(s)	71, 73, 840, 1419
BshFI	GGCC	3 cut(s)	468, 1681, 1740
BshNI	GGYRCC	2 cut(s)	50, 1121
BsiHKAI	GWGCWC	1 cut(s)	613
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	1659
BslFI	GGGAC	1 cut(s)	1278
BslI	CCNNNNNNNGG	1 cut(s)	844
BsmAI	GTCTC	6 cut(s)	158, 768, 1052, 1477, 1623, 1704
BsmFI	GGGAC	1 cut(s)	1278
BsmI	GAATGC	5 cut(s)	121, 833, 1230, 1546, 1569
BsnI	GGCC	3 cut(s)	468, 1681, 1740
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp143I	GATC	7 cut(s)	178, 205, 211, 221, 581, 625, 775
Bsp19I	CCATGG	1 cut(s)	1582
Bsp68I	TCGCGA	1 cut(s)	1419
BspACI	CCGC	8 cut(s)	63, 66, 69, 552, 838, 864, 1119, 1579
BspANI	GGCC	3 cut(s)	468, 1681, 1740
BspCNI	CTCAG	2 cut(s)	742, 883
BspFNI	CGCG	4 cut(s)	71, 73, 840, 1419
BspHI	TCATGA	1 cut(s)	1111
BspLI	GGNNCC	3 cut(s)	52, 777, 1123
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	6 cut(s)	200, 229, 589, 620, 770, 783
BspT107I	GGYRCC	2 cut(s)	50, 1121
BspTI	CTTAAG	1 cut(s)	1598
BsrBI	CCGCTC	1 cut(s)	552
BsrDI	GCAATG	2 cut(s)	640, 1200
BsrI	ACTGG	3 cut(s)	52, 451, 1283
BssECI	CCNNGG	4 cut(s)	469, 1019, 1582, 1688
BssMI	GATC	7 cut(s)	178, 205, 211, 221, 581, 625, 775
BssNI	GRCGYC	3 cut(s)	8, 51, 60
BssT1I	CCWWGG	2 cut(s)	1582, 1688
Bst2UI	CCWGG	4 cut(s)	471, 1006, 1020, 1080
Bst4CI	ACNGT	6 cut(s)	335, 454, 487, 532, 762, 1715
Bst6I	CTCTTC	3 cut(s)	574, 1431, 1642
BstACI	GRCGYC	3 cut(s)	8, 51, 60
BstAFI	CTTAAG	1 cut(s)	1598
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	6 cut(s)	842, 903, 1013, 1368, 1695, 1751
BstDEI	CTNAG	3 cut(s)	750, 882, 891
BstDSI	CCRYGG	1 cut(s)	1582
BstF5I	GGATG	4 cut(s)	352, 397, 1102, 1348
BstFNI	CGCG	4 cut(s)	71, 73, 840, 1419
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	3 cut(s)	53, 73, 1011
BstKTI	GATC	7 cut(s)	181, 208, 214, 224, 584, 628, 778
BstMAI	GTCTC	6 cut(s)	158, 768, 1052, 1477, 1623, 1704
BstMBI	GATC	7 cut(s)	178, 205, 211, 221, 581, 625, 775
BstNI	CCWGG	4 cut(s)	471, 1006, 1020, 1080
BstNSI	RCATGY	3 cut(s)	794, 1015, 1153
BstSCI	CCNGG	5 cut(s)	469, 1004, 1018, 1078, 1657
BstSFI	CTRYAG	1 cut(s)	252
BstUI	CGCG	4 cut(s)	71, 73, 840, 1419
BstV2I	GAAGAC	3 cut(s)	818, 1026, 1146
BstX2I	RGATCY	4 cut(s)	211, 221, 581, 775
BstYI	RGATCY	4 cut(s)	211, 221, 581, 775
BsuI	GTATCC	1 cut(s)	1284
BsuRI	GGCC	3 cut(s)	468, 1681, 1740
BtgI	CCRYGG	1 cut(s)	1582
BtgZI	GCGATG	1 cut(s)	1719
BtsCI	GGATG	4 cut(s)	352, 397, 1102, 1348
BtsI	GCAGTG	2 cut(s)	1182, 1361
BtsIMutI	CAGTG	9 cut(s)	45, 133, 156, 459, 484, 806, 1182, 1361, 1720
BtuMI	TCGCGA	1 cut(s)	1419
Cac8I	GCNNGC	6 cut(s)	842, 903, 1013, 1368, 1695, 1751
CaiI	CAGNNNCTG	1 cut(s)	1529
CciI	TCATGA	1 cut(s)	1111
CfoI	GCGC	3 cut(s)	53, 73, 1011
Cfr13I	GGNCC	4 cut(s)	467, 554, 1002, 1049
CseI	GACGC	3 cut(s)	16, 68, 1732
Csp6I	GTAC	4 cut(s)	318, 336, 722, 1286
CviQI	GTAC	4 cut(s)	318, 336, 722, 1286
DdeI	CTNAG	3 cut(s)	750, 882, 891
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	7 cut(s)	180, 207, 213, 223, 583, 627, 777
DpnII	GATC	7 cut(s)	178, 205, 211, 221, 581, 625, 775
DraIII	CACNNNGTG	1 cut(s)	608
DrdI	GACNNNNNNGTC	1 cut(s)	1266
DseDI	GACNNNNNNGTC	1 cut(s)	1266
Eam1104I	CTCTTC	3 cut(s)	574, 1431, 1642
EarI	CTCTTC	3 cut(s)	574, 1431, 1642
Eco130I	CCWWGG	2 cut(s)	1582, 1688
Eco32I	GATATC	2 cut(s)	265, 1226
Eco47I	GGWCC	3 cut(s)	554, 1002, 1049
Eco57I	CTGAAG	6 cut(s)	555, 830, 987, 1233, 1409, 1428
Eco88I	CYCGRG	1 cut(s)	80
EcoRII	CCWGG	4 cut(s)	469, 1004, 1018, 1078
EcoRV	GATATC	2 cut(s)	265, 1226
EcoT14I	CCWWGG	2 cut(s)	1582, 1688
EcoT22I	ATGCAT	1 cut(s)	121
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
ErhI	CCWWGG	2 cut(s)	1582, 1688
FaqI	GGGAC	1 cut(s)	1278
FauI	CCCGC	1 cut(s)	871
FbaI	TGATCA	1 cut(s)	178
FokI	GGATG	4 cut(s)	339, 404, 1089, 1355
FspBI	CTAG	9 cut(s)	215, 248, 606, 630, 770, 1053, 1062, 1074, 1689
GlaI	GCGC	3 cut(s)	52, 72, 1010
GsuI	CTGGAG	1 cut(s)	1101
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	468, 1681, 1740
HapII	CCGG	1 cut(s)	1659
HgaI	GACGC	3 cut(s)	16, 68, 1732
HhaI	GCGC	3 cut(s)	53, 73, 1011
Hin1I	GRCGYC	3 cut(s)	8, 51, 60
Hin6I	GCGC	3 cut(s)	51, 71, 1009
HinP1I	GCGC	3 cut(s)	51, 71, 1009
HindIII	AAGCTT	2 cut(s)	928, 1758
HinfI	GANTC	5 cut(s)	655, 1031, 1206, 1267, 1445
HpaII	CCGG	1 cut(s)	1659
HphI	GGTGA	6 cut(s)	581, 587, 701, 758, 1293, 1687
Hpy166II	GTNNAC	2 cut(s)	338, 722
Hpy188I	TCNGA	6 cut(s)	418, 956, 1135, 1311, 1452, 1531
Hpy8I	GTNNAC	2 cut(s)	338, 722
Hpy99I	CGWCG	4 cut(s)	10, 62, 1419, 1593
HpyAV	CCTTC	8 cut(s)	43, 125, 1080, 1135, 1140, 1208, 1384, 1562
HpyCH4III	ACNGT	6 cut(s)	335, 454, 487, 532, 762, 1715
HpyCH4IV	ACGT	1 cut(s)	513
HpyF3I	CTNAG	3 cut(s)	750, 882, 891
HpySE526I	ACGT	1 cut(s)	513
Hsp92I	GRCGYC	3 cut(s)	8, 51, 60
HspAI	GCGC	3 cut(s)	51, 71, 1009
KasI	GGCGCC	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	7 cut(s)	178, 205, 211, 221, 581, 625, 775
LmnI	GCTCC	8 cut(s)	85, 430, 549, 616, 898, 979, 1162, 1468
LweI	GCATC	4 cut(s)	51, 1170, 1367, 1535
MaeI	CTAG	9 cut(s)	215, 248, 606, 630, 770, 1053, 1062, 1074, 1689
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	4 cut(s)	346, 442, 804, 1546
MalI	GATC	7 cut(s)	180, 207, 213, 223, 583, 627, 777
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	7 cut(s)	178, 205, 211, 221, 581, 625, 775
MboII	GAAGA	9 cut(s)	561, 656, 823, 980, 1026, 1146, 1448, 1454, 1659
MflI	RGATCY	4 cut(s)	211, 221, 581, 775
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	6 cut(s)	432, 713, 1043, 1250, 1475, 1487
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	2 cut(s)	1040, 1276
MmeI	TCCRAC	1 cut(s)	199
Mph1103I	ATGCAT	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	833
MseI	TTAA	1 cut(s)	1599
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	521
MspCI	CTTAAG	1 cut(s)	1598
MspI	CCGG	1 cut(s)	1659
MspR9I	CCNGG	5 cut(s)	471, 1006, 1020, 1080, 1659
Mva1269I	GAATGC	5 cut(s)	121, 833, 1230, 1546, 1569
MvaI	CCWGG	4 cut(s)	471, 1006, 1020, 1080
MvnI	CGCG	4 cut(s)	71, 73, 840, 1419
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	1659
NcoI	CCATGG	1 cut(s)	1582
NdeII	GATC	7 cut(s)	178, 205, 211, 221, 581, 625, 775
NlaIV	GGNNCC	3 cut(s)	52, 777, 1123
NmuCI	GTSAC	1 cut(s)	804
NruI	TCGCGA	1 cut(s)	1419
NsiI	ATGCAT	1 cut(s)	121
NspI	RCATGY	3 cut(s)	794, 1015, 1153
OliI	CACNNNNGTG	1 cut(s)	149
PaeI	GCATGC	1 cut(s)	1015
PaeR7I	CTCGAG	1 cut(s)	80
PagI	TCATGA	1 cut(s)	1111
PciI	ACATGT	1 cut(s)	790
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PctI	GAATGC	5 cut(s)	121, 833, 1230, 1546, 1569
PdmI	GAANNNNTTC	1 cut(s)	833
PfeI	GAWTC	3 cut(s)	655, 1206, 1445
PfoI	TCCNGGA	1 cut(s)	1078
PleI	GAGTC	2 cut(s)	1039, 1275
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	2 cut(s)	1039, 1275
PscI	ACATGT	1 cut(s)	790
Psp6I	CCWGG	4 cut(s)	469, 1004, 1018, 1078
PspGI	CCWGG	4 cut(s)	469, 1004, 1018, 1078
PspN4I	GGNNCC	3 cut(s)	52, 777, 1123
PspPI	GGNCC	4 cut(s)	467, 554, 1002, 1049
PspXI	VCTCGAGB	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	1529
PsuI	RGATCY	4 cut(s)	211, 221, 581, 775
PvuII	CAGCTG	1 cut(s)	521
RruI	TCGCGA	1 cut(s)	1419
RsaI	GTAC	4 cut(s)	319, 337, 723, 1287
RsaNI	GTAC	4 cut(s)	318, 336, 722, 1286
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	1599
Sau3AI	GATC	7 cut(s)	178, 205, 211, 221, 581, 625, 775
Sau96I	GGNCC	4 cut(s)	467, 554, 1002, 1049
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	2 cut(s)	1040, 1276
ScrFI	CCNGG	5 cut(s)	471, 1006, 1020, 1080, 1659
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	4 cut(s)	51, 1170, 1367, 1535
SfcI	CTRYAG	1 cut(s)	252
SfoI	GGCGCC	1 cut(s)	52
Sfr274I	CTCGAG	1 cut(s)	80
SinI	GGWCC	3 cut(s)	554, 1002, 1049
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	5 cut(s)	80, 284, 1184, 1515, 1598
SmoI	CTYRAG	5 cut(s)	80, 284, 1184, 1515, 1598
SphI	GCATGC	1 cut(s)	1015
Sse9I	AATT	6 cut(s)	432, 713, 1043, 1250, 1475, 1487
SsiI	CCGC	8 cut(s)	63, 66, 69, 552, 838, 864, 1119, 1579
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	9 cut(s)	215, 248, 606, 630, 770, 1053, 1062, 1074, 1689
StyD4I	CCNGG	5 cut(s)	469, 1004, 1018, 1078, 1657
StyI	CCWWGG	2 cut(s)	1582, 1688
TaaI	ACNGT	6 cut(s)	335, 454, 487, 532, 762, 1715
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	5 cut(s)	27, 81, 616, 658, 1591
TasI	AATT	6 cut(s)	432, 713, 1043, 1250, 1475, 1487
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	4 cut(s)	65, 68, 71, 1581
TfiI	GAWTC	3 cut(s)	655, 1206, 1445
Tru1I	TTAA	1 cut(s)	1599
Tru9I	TTAA	1 cut(s)	1599
TscAI	CASTG	9 cut(s)	52, 133, 156, 459, 484, 813, 1182, 1368, 1720
TseFI	GTSAC	1 cut(s)	804
Tsp45I	GTSAC	1 cut(s)	804
TspDTI	ATGAA	7 cut(s)	25, 120, 181, 393, 1362, 1621, 1746
TspGWI	ACGGA	1 cut(s)	1260
TspRI	CASTG	9 cut(s)	52, 133, 156, 459, 484, 813, 1182, 1368, 1720
Vha464I	CTTAAG	1 cut(s)	1598
VpaK11BI	GGWCC	3 cut(s)	554, 1002, 1049
XapI	RAATTY	1 cut(s)	1043
XceI	RCATGY	3 cut(s)	794, 1015, 1153
XhoI	CTCGAG	1 cut(s)	80
XmaJI	CCTAGG	1 cut(s)	1688
XmnI	GAANNNNTTC	1 cut(s)	833
XspI	CTAG	9 cut(s)	215, 248, 606, 630, 770, 1053, 1062, 1074, 1689
ZrmI	AGTACT	1 cut(s)	319
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.