Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009394

Physical Location & Seq

Genomic Coordinates Forward (+)

16501430 .. 16507244

Gene Structure 5815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG179300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGACATAGATGATCCGGATCTAGTTGGATCTCATAGAAATCCTCTACCACTTCTAGCTGCAGCCAGAGATATCAATCCATTTTCGTATCTTGAGAACCTTGATAGAAGTGTCTTTGAAAGTAGTACTGATATAACAAACCGTACACCATTTGTTACTCATCCAAGAGAAGTGAGGGAAATCCCCATAGAAGTCAAGGATGGCAGTCATTCGTCTGGTCATTCTGACCATGCTCCTAAAATTGATGATGCTACTGGAACAGCAGAGGCATACGGTCCAGGTGTCAGTGGAACGGTTATAGTTGATGATGACGATGATGATGTTGCAGCTGCCCCAACTGTTCGGACAGGCCAAGGGAGCGGACCAAGAGATAACTCTTCAGGTGATGGATCTCATCACCAGACTTTTGCACCCAGTGCTCCTCGATTTGATGATCCTAGCAATGATATTGAAGAACAAATGATTCGAGCTGCTATTGAGGCTTCAAAACGGGAGGTTGAGGCAAACCACTCAAATCACCAATTTGGTGTACCAAATGAGTTTGATGATATTGAGCCTGAGCAAAGACAGTCTCACCTAGAGGATCCTGAACTTGCACATGTAGTTTCATTGTCACTGAAGACAGCAGAGCAAGAGAAAGCATTCCGCGAGCAGGGGGGAAATGTTAGACCCACAGAGATGGGTGCTTCTAAGGAAGCTGAGGTGGAGCTGGCTAAAGTAGCAGCACCAAATGGAAGCTTGGAGGCAGGAAGCTCATCTATCAGAGATGATACTGAAGATGTGGAGGAGCAACCTCTTGTCAGGCACAGGTCCAGGCGCATGCCTCCTGGGTCTGTGGAGTCTTCCAAAGAATTTGGACCTAGTGAGACTAGCACACCTTCAAGTCCTGGAGAGCAGGATATGGGTAATCATCCTAGTCATGTTGGCAGTGCCTTCCCTTCTGACGAGTGGGGAGGCATGTCTTCACAGGAGCATGACGAAGCAGTGATGCTTGAGGCTGCAATGTTTGGTGGAATCCCTGAAGGGTCTGGATATCGCATTCCCTATGCACCTCATCAATTTATGCGACCAGAGAGTCCGTATCCCCTGCCAGTACCTCGTCCCCCATCACCCTCTCTGACGGCACAGCGAATGATACGGGAACAACAGGATGATGAATATCTTGCTTCACTGCAAGCTGACAGAGAAAAGGAACTGAAGGCTATTGAGGAAGCTGAAGCTCGTCGCGAAGCAGAAAGACAAGAAGAGGAAGAATCTCGGAGGAAAGTTGAGGAGGAGCAGGTAATGATGTACATGTTTATGTCTATAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0008150 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA_4 UBX

Protein Analysis

437

Amino Acids

48.05

Weight (kDa)

4.58

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11740 AT4G11740 AT4G23040
fragaria_vesca	FvH4_5g01560
malus_domestica	MD04G1066700.v1.1 MD06G1073600.v1.1
prunus_persica	Prupe.5G091800_v2.0.a1 Prupe.5G091800_v2.0.a1
pyrus_communis	pycom04g05990 pycom06g07280
rosa_chinensis	RchiOBHm_Chr7g0199121
rosa_laevigata	RLG00000003813
rosa_multiflora	Rmu_sc0006266.1_g000051
rosa_roxburghii	Rroxscaffold_3G00257060
rosa_rugosa	Rorug07G0052800 Rorug07G0052900
rosa_samantha	Rh7AG176300 Rh7BG179800 Rh7CG185400 Rh7DG179300
rosa_wichuraiana	Rw7G015470 Rw7G015500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1074
Acc36I	ACCTGC	1 cut(s)	1270
AccBSI	CCGCTC	1 cut(s)	360
AccII	CGCG	2 cut(s)	648, 1227
AccIII	TCCGGA	1 cut(s)	16
AciI	CCGC	2 cut(s)	360, 646
AclWI	GGATC	7 cut(s)	8, 27, 37, 397, 428, 578, 591
AcsI	RAATTY	1 cut(s)	851
AcuI	CTGAAG	6 cut(s)	363, 638, 795, 1041, 1217, 1236
AdeI	CACNNNGTG	1 cut(s)	416
AfaI	GTAC	5 cut(s)	127, 145, 531, 1095, 1292
AfiI	CCNNNNNNNGG	1 cut(s)	652
AflIII	ACRYGT	2 cut(s)	598, 1293
AgsI	TTSAA	4 cut(s)	119, 452, 486, 882
AjnI	CCWGG	4 cut(s)	277, 812, 826, 886
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	2 cut(s)	576, 860
AlwI	GGATC	7 cut(s)	8, 27, 37, 397, 428, 578, 591
Aor13HI	TCCGGA	1 cut(s)	16
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	7 cut(s)	59, 62, 326, 329, 470, 722, 998
ApoI	RAATTY	1 cut(s)	851
Asp700I	GAANNNNTTC	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	819
AspS9I	GGNCC	4 cut(s)	275, 362, 810, 857
AsuHPI	GGTGA	5 cut(s)	389, 395, 509, 566, 1101
AvaII	GGWCC	4 cut(s)	275, 362, 810, 857
BamHI	GGATCC	1 cut(s)	583
BbsI	GAAGAC	3 cut(s)	626, 834, 954
Bbv12I	GWGCWC	1 cut(s)	421
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	7 cut(s)	46, 74, 316, 338, 457, 734, 985
BccI	CCATC	4 cut(s)	194, 380, 673, 1114
BceAI	ACGGC	1 cut(s)	1137
BciT130I	CCWGG	4 cut(s)	279, 814, 828, 888
BciVI	GTATCC	1 cut(s)	1092
BcoDI	GTCTC	2 cut(s)	576, 860
BfaI	CTAG	7 cut(s)	23, 56, 438, 578, 861, 870, 915
BfmI	CTRYAG	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	1270
BfuI	GTATCC	1 cut(s)	1092
BisI	GCNGC	7 cut(s)	60, 63, 327, 330, 471, 723, 999
BlsI	GCNGC	7 cut(s)	61, 64, 328, 331, 472, 724, 1000
BmcAI	AGTACT	1 cut(s)	127
Bme1390I	CCNGG	4 cut(s)	279, 814, 828, 888
Bme18I	GGWCC	4 cut(s)	275, 362, 810, 857
BmgT120I	GGNCC	4 cut(s)	275, 362, 810, 857
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	4 cut(s)	279, 814, 828, 888
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	2 cut(s)	238, 978
BmuI	ACTGGG	1 cut(s)	408
BpiI	GAAGAC	3 cut(s)	626, 834, 954
BpmI	CTGGAG	1 cut(s)	909
Bpu10I	CCTNAGC	2 cut(s)	558, 699
BpuEI	CTTGAG	2 cut(s)	113, 1013
BsaBI	GATNNNNATC	3 cut(s)	18, 75, 1158
BsaJI	CCNNGG	2 cut(s)	352, 827
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse1I	ACTGG	3 cut(s)	259, 414, 1091
Bse3DI	GCAATG	2 cut(s)	448, 1008
Bse8I	GATNNNNATC	3 cut(s)	18, 75, 1158
BseAI	TCCGGA	1 cut(s)	16
BseBI	CCWGG	4 cut(s)	279, 814, 828, 888
BseDI	CCNNGG	2 cut(s)	352, 827
BseGI	GGATG	4 cut(s)	160, 205, 910, 1156
BseJI	GATNNNNATC	3 cut(s)	18, 75, 1158
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMI	GCAATG	2 cut(s)	448, 1008
BseMII	CTCAG	2 cut(s)	549, 690
BseNI	ACTGG	3 cut(s)	259, 414, 1091
BseRI	GAGGAG	4 cut(s)	411, 800, 1286, 1289
BseXI	GCAGC	7 cut(s)	46, 74, 316, 338, 457, 734, 985
Bsh1236I	CGCG	2 cut(s)	648, 1227
BshFI	GGCC	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	1086
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	2 cut(s)	576, 860
BsmFI	GGGAC	1 cut(s)	1086
BsmI	GAATGC	2 cut(s)	641, 1038
BsnI	GGCC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp13I	TCCGGA	1 cut(s)	16
Bsp1407I	TGTACA	1 cut(s)	1290
Bsp143I	GATC	6 cut(s)	13, 19, 29, 389, 433, 583
Bsp68I	TCGCGA	1 cut(s)	1227
BspACI	CCGC	2 cut(s)	360, 646
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	2 cut(s)	550, 691
BspEI	TCCGGA	1 cut(s)	16
BspFNI	CGCG	2 cut(s)	648, 1227
BspLI	GGNNCC	1 cut(s)	585
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	1270
BspPI	GGATC	7 cut(s)	8, 27, 37, 397, 428, 578, 591
BsrBI	CCGCTC	1 cut(s)	360
BsrDI	GCAATG	2 cut(s)	448, 1008
BsrGI	TGTACA	1 cut(s)	1290
BsrI	ACTGG	3 cut(s)	259, 414, 1091
BssECI	CCNNGG	2 cut(s)	352, 827
BssMI	GATC	6 cut(s)	13, 19, 29, 389, 433, 583
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	4 cut(s)	279, 814, 828, 888
Bst4CI	ACNGT	5 cut(s)	143, 275, 295, 340, 570
Bst6I	CTCTTC	2 cut(s)	382, 1239
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstAUI	TGTACA	1 cut(s)	1290
BstC8I	GCNNGC	4 cut(s)	650, 711, 821, 1176
BstDEI	CTNAG	3 cut(s)	558, 690, 699
BstF5I	GGATG	4 cut(s)	160, 205, 910, 1156
BstFNI	CGCG	2 cut(s)	648, 1227
BstHHI	GCGC	1 cut(s)	819
BstKTI	GATC	6 cut(s)	16, 22, 32, 392, 436, 586
BstMAI	GTCTC	2 cut(s)	576, 860
BstMBI	GATC	6 cut(s)	13, 19, 29, 389, 433, 583
BstMWI	GCNNNNNNNGC	4 cut(s)	357, 416, 479, 719
BstNI	CCWGG	4 cut(s)	279, 814, 828, 888
BstNSI	RCATGY	4 cut(s)	602, 823, 961, 1297
BstSCI	CCNGG	4 cut(s)	277, 812, 826, 886
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	2 cut(s)	648, 1227
BstV1I	GCAGC	7 cut(s)	46, 74, 316, 338, 457, 734, 985
BstV2I	GAAGAC	3 cut(s)	626, 834, 954
BstX2I	RGATCY	4 cut(s)	19, 29, 389, 583
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	4 cut(s)	19, 29, 389, 583
BsuI	GTATCC	1 cut(s)	1092
BsuRI	GGCC	1 cut(s)	351
BtsCI	GGATG	4 cut(s)	160, 205, 910, 1156
BtsI	GCAGTG	3 cut(s)	934, 990, 1169
BtsIMutI	CAGTG	6 cut(s)	292, 421, 614, 934, 990, 1169
BtuMI	TCGCGA	1 cut(s)	1227
BveI	ACCTGC	1 cut(s)	1270
Cac8I	GCNNGC	4 cut(s)	650, 711, 821, 1176
CfoI	GCGC	1 cut(s)	819
Cfr13I	GGNCC	4 cut(s)	275, 362, 810, 857
Csp6I	GTAC	5 cut(s)	126, 144, 530, 1094, 1291
CviAII	CATG	7 cut(s)	230, 599, 820, 920, 958, 974, 1294
CviQI	GTAC	5 cut(s)	126, 144, 530, 1094, 1291
DdeI	CTNAG	3 cut(s)	558, 690, 699
DpnI	GATC	6 cut(s)	15, 21, 31, 391, 435, 585
DpnII	GATC	6 cut(s)	13, 19, 29, 389, 433, 583
DraIII	CACNNNGTG	1 cut(s)	416
DrdI	GACNNNNNNGTC	1 cut(s)	1074
DseDI	GACNNNNNNGTC	1 cut(s)	1074
Eam1104I	CTCTTC	2 cut(s)	382, 1239
EarI	CTCTTC	2 cut(s)	382, 1239
Eco130I	CCWWGG	1 cut(s)	352
Eco32I	GATATC	2 cut(s)	73, 1034
Eco47I	GGWCC	4 cut(s)	275, 362, 810, 857
Eco57I	CTGAAG	6 cut(s)	363, 638, 795, 1041, 1217, 1236
EcoRII	CCWGG	4 cut(s)	277, 812, 826, 886
EcoRV	GATATC	2 cut(s)	73, 1034
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	7 cut(s)	233, 602, 823, 923, 961, 977, 1297
FaqI	GGGAC	1 cut(s)	1086
FatI	CATG	7 cut(s)	229, 598, 819, 919, 957, 973, 1293
Fnu4HI	GCNGC	7 cut(s)	60, 63, 327, 330, 471, 723, 999
FokI	GGATG	4 cut(s)	147, 212, 897, 1163
Fsp4HI	GCNGC	7 cut(s)	60, 63, 327, 330, 471, 723, 999
FspBI	CTAG	7 cut(s)	23, 56, 438, 578, 861, 870, 915
GlaI	GCGC	1 cut(s)	818
GluI	GCNGC	7 cut(s)	60, 63, 327, 330, 471, 723, 999
GsuI	CTGGAG	1 cut(s)	909
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	1 cut(s)	819
Hin1II	CATG	7 cut(s)	233, 602, 823, 923, 961, 977, 1297
Hin6I	GCGC	1 cut(s)	817
HinP1I	GCGC	1 cut(s)	817
HindIII	AAGCTT	1 cut(s)	736
HinfI	GANTC	5 cut(s)	463, 839, 1014, 1075, 1253
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	5 cut(s)	389, 395, 509, 566, 1101
Hpy166II	GTNNAC	2 cut(s)	146, 530
Hpy188I	TCNGA	6 cut(s)	226, 345, 764, 943, 1119, 1260
Hpy188III	TCNNGA	5 cut(s)	17, 92, 587, 1029, 1226
Hpy8I	GTNNAC	2 cut(s)	146, 530
Hpy99I	CGWCG	1 cut(s)	1227
HpyAV	CCTTC	5 cut(s)	888, 943, 948, 1016, 1192
HpyCH4III	ACNGT	5 cut(s)	143, 275, 295, 340, 570
HpyCH4V	TGCA	7 cut(s)	62, 326, 410, 596, 1001, 1049, 1174
HpyF10VI	GCNNNNNNNGC	4 cut(s)	357, 416, 479, 719
HpyF3I	CTNAG	3 cut(s)	558, 690, 699
Hsp92II	CATG	7 cut(s)	233, 602, 823, 923, 961, 977, 1297
HspAI	GCGC	1 cut(s)	817
Kpn2I	TCCGGA	1 cut(s)	16
Kzo9I	GATC	6 cut(s)	13, 19, 29, 389, 433, 583
LmnI	GCTCC	7 cut(s)	238, 357, 424, 706, 787, 970, 1276
Lsp1109I	GCAGC	7 cut(s)	46, 74, 316, 338, 457, 734, 985
LweI	GCATC	2 cut(s)	238, 978
MaeI	CTAG	7 cut(s)	23, 56, 438, 578, 861, 870, 915
MaeIII	GTNAC	2 cut(s)	154, 612
MalI	GATC	6 cut(s)	15, 21, 31, 391, 435, 585
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	6 cut(s)	13, 19, 29, 389, 433, 583
MboII	GAAGA	8 cut(s)	369, 464, 631, 788, 834, 954, 1256, 1262
MflI	RGATCY	4 cut(s)	19, 29, 389, 583
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	4 cut(s)	240, 521, 851, 1058
MlyI	GAGTC	2 cut(s)	848, 1084
MmeI	TCCRAC	1 cut(s)	7
MroI	TCCGGA	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	641
MseI	TTAA	1 cut(s)	1312
MslI	CAYNNNNRTG	2 cut(s)	677, 1298
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	4 cut(s)	279, 814, 828, 888
Mva1269I	GAATGC	2 cut(s)	641, 1038
MvaI	CCWGG	4 cut(s)	279, 814, 828, 888
MvnI	CGCG	2 cut(s)	648, 1227
MwoI	GCNNNNNNNGC	4 cut(s)	357, 416, 479, 719
NdeII	GATC	6 cut(s)	13, 19, 29, 389, 433, 583
NlaIII	CATG	7 cut(s)	233, 602, 823, 923, 961, 977, 1297
NlaIV	GGNNCC	1 cut(s)	585
NmuCI	GTSAC	1 cut(s)	612
NruI	TCGCGA	1 cut(s)	1227
NspI	RCATGY	4 cut(s)	602, 823, 961, 1297
PaeI	GCATGC	1 cut(s)	823
PciI	ACATGT	2 cut(s)	598, 1293
PctI	GAATGC	2 cut(s)	641, 1038
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	3 cut(s)	463, 1014, 1253
PfoI	TCCNGGA	1 cut(s)	886
PkrI	GCNGC	7 cut(s)	61, 64, 328, 331, 472, 724, 1000
PleI	GAGTC	2 cut(s)	847, 1083
PpsI	GAGTC	2 cut(s)	847, 1083
PscI	ACATGT	2 cut(s)	598, 1293
Psp6I	CCWGG	4 cut(s)	277, 812, 826, 886
PspGI	CCWGG	4 cut(s)	277, 812, 826, 886
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	4 cut(s)	275, 362, 810, 857
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	4 cut(s)	19, 29, 389, 583
PvuII	CAGCTG	1 cut(s)	329
RruI	TCGCGA	1 cut(s)	1227
RsaI	GTAC	5 cut(s)	127, 145, 531, 1095, 1292
RsaNI	GTAC	5 cut(s)	126, 144, 530, 1094, 1291
RseI	CAYNNNNRTG	2 cut(s)	677, 1298
SaqAI	TTAA	1 cut(s)	1312
SatI	GCNGC	7 cut(s)	60, 63, 327, 330, 471, 723, 999
Sau3AI	GATC	6 cut(s)	13, 19, 29, 389, 433, 583
Sau96I	GGNCC	4 cut(s)	275, 362, 810, 857
ScaI	AGTACT	1 cut(s)	127
SchI	GAGTC	2 cut(s)	848, 1084
ScrFI	CCNGG	4 cut(s)	279, 814, 828, 888
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	2 cut(s)	238, 978
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	4 cut(s)	275, 362, 810, 857
SmiMI	CAYNNNNRTG	2 cut(s)	677, 1298
SmlI	CTYRAG	2 cut(s)	92, 992
SmoI	CTYRAG	2 cut(s)	92, 992
SphI	GCATGC	1 cut(s)	823
Sse9I	AATT	4 cut(s)	240, 521, 851, 1058
SsiI	CCGC	2 cut(s)	360, 646
SspMI	CTAG	7 cut(s)	23, 56, 438, 578, 861, 870, 915
StyD4I	CCNGG	4 cut(s)	277, 812, 826, 886
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	5 cut(s)	143, 275, 295, 340, 570
TaqI	TCGA	2 cut(s)	424, 466
TasI	AATT	4 cut(s)	240, 521, 851, 1058
TatI	WGTACW	2 cut(s)	125, 1290
TfiI	GAWTC	3 cut(s)	463, 1014, 1253
Tru1I	TTAA	1 cut(s)	1312
Tru9I	TTAA	1 cut(s)	1312
TscAI	CASTG	6 cut(s)	292, 421, 621, 934, 990, 1176
TseFI	GTSAC	1 cut(s)	612
TseI	GCWGC	7 cut(s)	59, 62, 326, 329, 470, 722, 998
Tsp45I	GTSAC	1 cut(s)	612
TspDTI	ATGAA	2 cut(s)	597, 1170
TspGWI	ACGGA	1 cut(s)	1068
TspRI	CASTG	6 cut(s)	292, 421, 621, 934, 990, 1176
VpaK11BI	GGWCC	4 cut(s)	275, 362, 810, 857
XapI	RAATTY	1 cut(s)	851
XceI	RCATGY	4 cut(s)	602, 823, 961, 1297
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	7 cut(s)	23, 56, 438, 578, 861, 870, 915
ZrmI	AGTACT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.