Rh7BG179800

Domain present in ubiquitin-regulatory proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009394
Physical Location & Seq
Forward (+)
14263149 .. 14265830
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG179800.1

Sequence Viewer

Length: 1131 bp
ATGATTCGAGCTGCTATTGAGGCTTCAAAACGGGAGGTTGAGGCAAACCACTCAAATCACCAATTTGGTGTACCAAATGAGTTTGATGATATTGAGCCTGAGCAAAGACAGTCTCACCTAGAGGATCCTGAACTTGCACATGTAGTTTCATTGTCACTGAAGACAGCAGAGCAAGAGAAAGCATTCCGCGAGCAGGGGGGAAATGTTAGACCTGCAGAGATGGGTGCTTCTAAGGAAGCTGAGGTGGAGCTGGCTAAAGTAGCAGCACCAAATGGAAGCTTGGAGGCAGGAAGCTCATCTATCAGAGATGATACTGAAGATGTGGAGGAGCAGCCTCTTGTCAGGCACAGGTCCAGGCGCATGCCTCCTGGGTCTGTGGAGTCTTCCAAAGAATTTGGACCTAGTGAGACTAGCACACCTTCTAGTCCTGGAGAGCAGGATATGGGTAATCATCCTAGTCATGATGGTGGTGCCTTCCCTTCTGACGAGTGGGGAGGCATGTCTTCACAGGAGCATGACGAAGCAGTGATGCTTGAGGCTGCAATGTTTGGTGGAATCCCTGAAGGGTCTGGATATCGCATTCCCTATGCACCTCATCAATTTATGCGACCAGAGAGTCCGTATCCCCTGCCAGTACCTCGTCCCCCATCACCCTCTCTGACGGCACAGCGAATGATACGGGAACAACAGGATGATGAATATCTTGCATCACTGCAAGCAGACAGAGAAAAGGAACTGAAGGCTATTGAGGAAGCTGAAGCTCGTCGTGAAGCAGAAAGACAAGAAGAGGAAGAATCTCGGAGGAAAGTTGAGGAGGAGCAGGAATTGGAGAGACAATTAGCAGCAAAAGAAGCTACTCTCCCTCAAGAACCAGCATCAGATGATGTGAATGCTGTAACCCTTCTGGTGCGAATGCCGGATGGCAGCCGCCATGGTCGTCGATTTCTTAAGACTGATAAGTTGCAGTCTCTTTTCAACTTCATAGATATTGGCAGAAGAGTGAAACCCGGCTCTTACAGAGTGGTGAGGCCGTTCCCTAGGCGTGCTTTCAGCGATGGAGACAGTGCATTGACACTGAATGAACTTGGCCTGACCAGCAAGCAAGAAGCTTTGTTTTTGGAGTTGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0008150 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBA_4 UBX

Protein Analysis

376

Amino Acids

41.94

Weight (kDa)

4.88

Isoelectric Point (pI)

71.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBX PF00789 296 - 374 5.3e-19 UBX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 615
Acc36I ACCTGC 1 cut(s) 220
AccB1I GGYRCC 1 cut(s) 470
AccII CGCG 1 cut(s) 189
AciI CCGC 2 cut(s) 187, 928
AclWI GGATC 2 cut(s) 119, 132
AcsI RAATTY 1 cut(s) 392
AcuI CTGAAG 5 cut(s) 179, 336, 582, 758, 777
AfaI GTAC 2 cut(s) 72, 636
AfiI CCNNNNNNNGG 1 cut(s) 193
AflII CTTAAG 1 cut(s) 947
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 2 cut(s) 27, 976
AjnI CCWGG 3 cut(s) 353, 367, 427
AluBI AGCT 9 cut(s) 11, 239, 250, 279, 294, 755, 761, 854, 1109
AluI AGCT 9 cut(s) 11, 239, 250, 279, 294, 755, 761, 854, 1109
Alw26I GTCTC 5 cut(s) 117, 401, 826, 972, 1053
AlwI GGATC 2 cut(s) 119, 132
AoxI GGCC 2 cut(s) 1028, 1087
ApeKI GCWGC 6 cut(s) 11, 263, 331, 539, 842, 924
ApoI RAATTY 1 cut(s) 392
Asp700I GAANNNNTTC 1 cut(s) 182
AspA2I CCTAGG 1 cut(s) 1037
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 351, 398
AsuC2I CCSGG 1 cut(s) 1008
AsuHPI GGTGA 4 cut(s) 50, 107, 642, 1036
AvaII GGWCC 2 cut(s) 351, 398
AvrII CCTAGG 1 cut(s) 1037
BamHI GGATCC 1 cut(s) 124
BanI GGYRCC 1 cut(s) 470
BbsI GAAGAC 3 cut(s) 167, 375, 495
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 5 cut(s) 275, 343, 526, 854, 936
BccI CCATC 5 cut(s) 214, 458, 655, 914, 1049
BceAI ACGGC 2 cut(s) 678, 1015
BciT130I CCWGG 3 cut(s) 355, 369, 429
BciVI GTATCC 1 cut(s) 633
BcnI CCSGG 1 cut(s) 1008
BcoDI GTCTC 5 cut(s) 117, 401, 826, 972, 1053
BfaI CTAG 6 cut(s) 119, 402, 411, 423, 456, 1038
BfmI CTRYAG 1 cut(s) 213
BfrI CTTAAG 1 cut(s) 947
BfuAI ACCTGC 1 cut(s) 220
BfuI GTATCC 1 cut(s) 633
BisI GCNGC 7 cut(s) 12, 264, 332, 540, 843, 925, 928
BlnI CCTAGG 1 cut(s) 1037
BlsI GCNGC 7 cut(s) 13, 265, 333, 541, 844, 926, 929
Bme1390I CCNGG 4 cut(s) 355, 369, 429, 1008
Bme18I GGWCC 2 cut(s) 351, 398
BmgT120I GGNCC 2 cut(s) 351, 398
BmiI GGNNCC 2 cut(s) 126, 472
BmrFI CCNGG 4 cut(s) 355, 369, 429, 1008
BmsI GCATC 3 cut(s) 519, 716, 884
BpiI GAAGAC 3 cut(s) 167, 375, 495
BpmI CTGGAG 1 cut(s) 450
Bpu10I CCTNAGC 2 cut(s) 99, 240
BpuEI CTTGAG 2 cut(s) 554, 849
BpuMI CCSGG 1 cut(s) 1008
BsaBI GATNNNNATC 1 cut(s) 699
BsaJI CCNNGG 3 cut(s) 368, 931, 1037
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 549
Bse8I GATNNNNATC 1 cut(s) 699
BseBI CCWGG 3 cut(s) 355, 369, 429
BseDI CCNNGG 3 cut(s) 368, 931, 1037
BseGI GGATG 3 cut(s) 451, 697, 925
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 2 cut(s) 90, 231
BseNI ACTGG 1 cut(s) 632
BseRI GAGGAG 3 cut(s) 341, 827, 830
BseXI GCAGC 5 cut(s) 275, 343, 526, 854, 936
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 2 cut(s) 1030, 1089
BshNI GGYRCC 1 cut(s) 470
BsiSI CCGG 2 cut(s) 917, 1008
BslFI GGGAC 1 cut(s) 627
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 5 cut(s) 117, 401, 826, 972, 1053
BsmFI GGGAC 1 cut(s) 627
BsmI GAATGC 4 cut(s) 182, 579, 895, 918
BsnI GGCC 2 cut(s) 1030, 1089
Bsp143I GATC 1 cut(s) 124
Bsp19I CCATGG 1 cut(s) 931
BspACI CCGC 2 cut(s) 187, 928
BspANI GGCC 2 cut(s) 1030, 1089
BspCNI CTCAG 2 cut(s) 91, 232
BspFNI CGCG 1 cut(s) 189
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 126, 472
BspMAI CTGCAG 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 220
BspPI GGATC 2 cut(s) 119, 132
BspT107I GGYRCC 1 cut(s) 470
BspTI CTTAAG 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 549
BsrI ACTGG 1 cut(s) 632
BssECI CCNNGG 3 cut(s) 368, 931, 1037
BssMI GATC 1 cut(s) 124
BssT1I CCWWGG 2 cut(s) 931, 1037
Bst2UI CCWGG 3 cut(s) 355, 369, 429
Bst4CI ACNGT 2 cut(s) 111, 1064
Bst6I CTCTTC 2 cut(s) 780, 991
BstAFI CTTAAG 1 cut(s) 947
BstC8I GCNNGC 6 cut(s) 191, 252, 362, 717, 1044, 1100
BstDEI CTNAG 3 cut(s) 99, 231, 240
BstDSI CCRYGG 1 cut(s) 931
BstF5I GGATG 3 cut(s) 451, 697, 925
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 5 cut(s) 117, 401, 826, 972, 1053
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 4 cut(s) 20, 260, 851, 1095
BstNI CCWGG 3 cut(s) 355, 369, 429
BstNSI RCATGY 3 cut(s) 143, 364, 502
BstSCI CCNGG 4 cut(s) 353, 367, 427, 1006
BstSFI CTRYAG 1 cut(s) 213
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 5 cut(s) 275, 343, 526, 854, 936
BstV2I GAAGAC 3 cut(s) 167, 375, 495
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuI GTATCC 1 cut(s) 633
BsuRI GGCC 2 cut(s) 1030, 1089
BtgI CCRYGG 1 cut(s) 931
BtgZI GCGATG 1 cut(s) 1068
BtsCI GGATG 3 cut(s) 451, 697, 925
BtsI GCAGTG 2 cut(s) 531, 710
BtsIMutI CAGTG 5 cut(s) 155, 531, 710, 1069, 1073
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 6 cut(s) 191, 252, 362, 717, 1044, 1100
CciI TCATGA 1 cut(s) 460
CfoI GCGC 1 cut(s) 360
Cfr13I GGNCC 2 cut(s) 351, 398
Csp6I GTAC 2 cut(s) 71, 635
CviAII CATG 6 cut(s) 140, 361, 461, 499, 515, 932
CviQI GTAC 2 cut(s) 71, 635
DdeI CTNAG 3 cut(s) 99, 231, 240
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DrdI GACNNNNNNGTC 1 cut(s) 615
DseDI GACNNNNNNGTC 1 cut(s) 615
Eam1104I CTCTTC 2 cut(s) 780, 991
EarI CTCTTC 2 cut(s) 780, 991
Eco130I CCWWGG 2 cut(s) 931, 1037
Eco32I GATATC 1 cut(s) 575
Eco47I GGWCC 2 cut(s) 351, 398
Eco57I CTGAAG 5 cut(s) 179, 336, 582, 758, 777
EcoRII CCWGG 3 cut(s) 353, 367, 427
EcoRV GATATC 1 cut(s) 575
EcoT14I CCWWGG 2 cut(s) 931, 1037
ErhI CCWWGG 2 cut(s) 931, 1037
FaeI CATG 6 cut(s) 143, 364, 464, 502, 518, 935
FaqI GGGAC 1 cut(s) 627
FatI CATG 6 cut(s) 139, 360, 460, 498, 514, 931
Fnu4HI GCNGC 7 cut(s) 12, 264, 332, 540, 843, 925, 928
FokI GGATG 3 cut(s) 438, 704, 932
Fsp4HI GCNGC 7 cut(s) 12, 264, 332, 540, 843, 925, 928
FspBI CTAG 6 cut(s) 119, 402, 411, 423, 456, 1038
GlaI GCGC 1 cut(s) 359
GluI GCNGC 7 cut(s) 12, 264, 332, 540, 843, 925, 928
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 2 cut(s) 1030, 1089
HapII CCGG 2 cut(s) 917, 1008
HhaI GCGC 1 cut(s) 360
Hin1II CATG 6 cut(s) 143, 364, 464, 502, 518, 935
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HindIII AAGCTT 2 cut(s) 277, 1107
HinfI GANTC 5 cut(s) 4, 380, 555, 616, 794
HpaII CCGG 2 cut(s) 917, 1008
HphI GGTGA 4 cut(s) 50, 107, 642, 1036
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 5 cut(s) 305, 484, 660, 801, 880
Hpy188III TCNNGA 5 cut(s) 128, 461, 570, 767, 866
Hpy8I GTNNAC 1 cut(s) 71
Hpy99I CGWCG 2 cut(s) 768, 942
HpyAV CCTTC 6 cut(s) 429, 484, 489, 557, 733, 911
HpyCH4III ACNGT 2 cut(s) 111, 1064
HpyCH4V TGCA 8 cut(s) 137, 215, 542, 590, 707, 715, 964, 1067
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 260, 851, 1095
HpyF3I CTNAG 3 cut(s) 99, 231, 240
Hsp92II CATG 6 cut(s) 143, 364, 464, 502, 518, 935
HspAI GCGC 1 cut(s) 358
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 4 cut(s) 247, 328, 511, 817
Lsp1109I GCAGC 5 cut(s) 275, 343, 526, 854, 936
LweI GCATC 3 cut(s) 519, 716, 884
MaeI CTAG 6 cut(s) 119, 402, 411, 423, 456, 1038
MaeIII GTNAC 2 cut(s) 153, 895
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 7 cut(s) 172, 329, 375, 495, 797, 803, 1008
MflI RGATCY 1 cut(s) 124
MluCI AATT 5 cut(s) 62, 392, 599, 824, 836
MlyI GAGTC 2 cut(s) 389, 625
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 1 cut(s) 948
MslI CAYNNNNRTG 1 cut(s) 465
MspCI CTTAAG 1 cut(s) 947
MspI CCGG 2 cut(s) 917, 1008
MspR9I CCNGG 4 cut(s) 355, 369, 429, 1008
Mva1269I GAATGC 4 cut(s) 182, 579, 895, 918
MvaI CCWGG 3 cut(s) 355, 369, 429
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 4 cut(s) 20, 260, 851, 1095
NciI CCSGG 1 cut(s) 1008
NcoI CCATGG 1 cut(s) 931
NdeII GATC 1 cut(s) 124
NlaIII CATG 6 cut(s) 143, 364, 464, 502, 518, 935
NlaIV GGNNCC 2 cut(s) 126, 472
NmuCI GTSAC 1 cut(s) 153
NspI RCATGY 3 cut(s) 143, 364, 502
PaeI GCATGC 1 cut(s) 364
PagI TCATGA 1 cut(s) 460
PciI ACATGT 1 cut(s) 139
PctI GAATGC 4 cut(s) 182, 579, 895, 918
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 3 cut(s) 4, 555, 794
PfoI TCCNGGA 1 cut(s) 427
PkrI GCNGC 7 cut(s) 13, 265, 333, 541, 844, 926, 929
PleI GAGTC 2 cut(s) 388, 624
PpsI GAGTC 2 cut(s) 388, 624
PscI ACATGT 1 cut(s) 139
Psp6I CCWGG 3 cut(s) 353, 367, 427
PspGI CCWGG 3 cut(s) 353, 367, 427
PspN4I GGNNCC 2 cut(s) 126, 472
PspPI GGNCC 2 cut(s) 351, 398
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 2 cut(s) 72, 636
RsaNI GTAC 2 cut(s) 71, 635
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 1 cut(s) 948
SatI GCNGC 7 cut(s) 12, 264, 332, 540, 843, 925, 928
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 2 cut(s) 351, 398
SchI GAGTC 2 cut(s) 389, 625
ScrFI CCNGG 4 cut(s) 355, 369, 429, 1008
SfaNI GCATC 3 cut(s) 519, 716, 884
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 2 cut(s) 351, 398
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 3 cut(s) 533, 864, 947
SmoI CTYRAG 3 cut(s) 533, 864, 947
SphI GCATGC 1 cut(s) 364
Sse9I AATT 5 cut(s) 62, 392, 599, 824, 836
SsiI CCGC 2 cut(s) 187, 928
SspMI CTAG 6 cut(s) 119, 402, 411, 423, 456, 1038
StyD4I CCNGG 4 cut(s) 353, 367, 427, 1006
StyI CCWWGG 2 cut(s) 931, 1037
TaaI ACNGT 2 cut(s) 111, 1064
TaqI TCGA 2 cut(s) 7, 940
TasI AATT 5 cut(s) 62, 392, 599, 824, 836
TauI GCSGC 1 cut(s) 930
TfiI GAWTC 3 cut(s) 4, 555, 794
Tru1I TTAA 1 cut(s) 948
Tru9I TTAA 1 cut(s) 948
TscAI CASTG 5 cut(s) 162, 531, 717, 1069, 1080
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 6 cut(s) 11, 263, 331, 539, 842, 924
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 4 cut(s) 138, 711, 970, 1095
TspGWI ACGGA 1 cut(s) 609
TspRI CASTG 5 cut(s) 162, 531, 717, 1069, 1080
Vha464I CTTAAG 1 cut(s) 947
VpaK11BI GGWCC 2 cut(s) 351, 398
XapI RAATTY 1 cut(s) 392
XceI RCATGY 3 cut(s) 143, 364, 502
XmaJI CCTAGG 1 cut(s) 1037
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 6 cut(s) 119, 402, 411, 423, 456, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.