MD04G1223000.v1.1

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015644
Physical Location & Seq
Reverse (-)
30340554 .. 30341186
633 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1223000.v1.1.491

Sequence Viewer

Length: 228 bp
ATGTCTATTGCCGCCGATGAGAATGGTATCGCCCTAATAAAACATGCCTTCAGTAAAGAAATCACTTTCTTTGACACAGCCGATGTGTACGGACCTCATGCGAATGAAATTCTTCTTGGGAAGCCGAAAGAGAGAAGAGGAGAAACAAAAGGCCCCGCCTTCTCTCTCTCCTTTTCTCTCTTTCGGCTGCACTCATCACACAAGGCCACATATTCTTTGCCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

76

Amino Acids

8.28

Weight (kDa)

8.11

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 6 - 41 4.4e-06 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 12, 156
AcsI RAATTY 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 34
AfaI GTAC 1 cut(s) 89
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AoxI GGCC 2 cut(s) 151, 204
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 92, 152
AvaII GGWCC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 174
BisI GCNGC 2 cut(s) 12, 188
BlsI GCNGC 2 cut(s) 13, 189
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 2 cut(s) 92, 152
BmiI GGNNCC 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 173
BshFI GGCC 2 cut(s) 153, 206
BsnI GGCC 2 cut(s) 153, 206
BspACI CCGC 2 cut(s) 12, 156
BspANI GGCC 2 cut(s) 153, 206
BspLI GGNNCC 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 130
BstNSI RCATGY 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 174
BsuRI GGCC 2 cut(s) 153, 206
Cfr13I GGNCC 2 cut(s) 92, 152
Csp6I GTAC 1 cut(s) 88
CviAII CATG 2 cut(s) 44, 98
CviJI RGCY 5 cut(s) 80, 124, 153, 187, 206
CviKI_1 RGCY 5 cut(s) 80, 124, 153, 187, 206
CviQI GTAC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 152
FaeI CATG 2 cut(s) 47, 101
FaiI YATR 3 cut(s) 45, 99, 211
FatI CATG 2 cut(s) 43, 97
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 2 cut(s) 12, 188
Fsp4HI GCNGC 2 cut(s) 12, 188
GluI GCNGC 2 cut(s) 12, 188
HaeIII GGCC 2 cut(s) 153, 206
Hin1II CATG 2 cut(s) 47, 101
Hpy166II GTNNAC 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 58, 169
HpyCH4V TGCA 1 cut(s) 190
Hsp92II CATG 2 cut(s) 47, 101
Lsp1109I GCAGC 1 cut(s) 174
MboII GAAGA 2 cut(s) 104, 147
MluCI AATT 1 cut(s) 108
MnlI CCTC 2 cut(s) 105, 131
MroXI GAANNNNTTC 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 102
NlaIII CATG 2 cut(s) 47, 101
NlaIV GGNNCC 1 cut(s) 154
NspI RCATGY 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 111
PkrI GCNGC 2 cut(s) 13, 189
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 92, 152
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 102
SatI GCNGC 2 cut(s) 12, 188
Sau96I GGNCC 2 cut(s) 92, 152
SetI ASST 1 cut(s) 97
SgeI CNNG 5 cut(s) 56, 110, 128, 167, 214
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 1 cut(s) 108
SsiI CCGC 2 cut(s) 12, 156
TasI AATT 1 cut(s) 108
TauI GCSGC 1 cut(s) 14
TseI GCWGC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 1 cut(s) 108
XceI RCATGY 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.