Rh5AG401300

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015644
Physical Location & Seq
Forward (+)
69510718 .. 69515680
4963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG401300.1

Sequence Viewer

Length: 660 bp
ATGAATTTGGGCCGTCTCCTTTTGCAGGTTTCCAAGTTGGGATTTGGGTGTATGGGACTTAGTGGAATCTATAATGTGCCAGTTTCTGAAGAGTTTGGCATATCAATGATCAAGTACGCATTTGACAGAGGAATAACATTCTTCGATACATCAAATGTTTATGGACCACATGCTAATGAAGTTTTGATCGGAAATGCATTGAAGCAGCTGCCTCGAGATAAGGTCCAGGTGGCTACAAAGTTTGGAATTGTAAAGGCTGAGCCTGAGAAAGTTATAATTAATGGCACTCATGAGTATGTTCGCTCCTGCTGCGAGGCTAGCCTGAAGCGGCTTGATGTGGACTGCATTGATCTTTACTATCAGCACCAGATAGATACATTAGTCCCCATAGAGGATACCCTTGATGCTTGGAATTGCAGTGCTAGTGGGATTCCAGGAGAGAATATGGGTGTTATTATACAATTCCTCTTGATCATGGTCAATCTAGGAGGACAGATGGATCCTTCATGGACTCTGCTAACCTATGCATCGATGACTATTGGTTTTGTTCACTTGTTGATTAGAAATCCTGTATCTGCTGTCATTCAAATCTTTTGGTGCAAGGAGCAAAAGACAGAACTGCAAAGCCGGGTATTTGGCAGTGGAAGCTCGTTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

219

Amino Acids

24.27

Weight (kDa)

5.55

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 12 - 136 1.3e-28 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 16
AciI CCGC 1 cut(s) 328
AclWI GGATC 2 cut(s) 494, 507
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 2 cut(s) 108, 344
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 25, 391
AgsI TTSAA 3 cut(s) 202, 587, 655
AjnI CCWGG 2 cut(s) 225, 433
AluBI AGCT 2 cut(s) 208, 648
AluI AGCT 2 cut(s) 208, 648
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 2 cut(s) 494, 507
AlwNI CAGNNNCTG 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 3 cut(s) 205, 208, 309
ApoI RAATTY 1 cut(s) 4
AseI ATTAAT 1 cut(s) 279
AspS9I GGNCC 3 cut(s) 10, 164, 223
AsuC2I CCSGG 1 cut(s) 629
AsuNHI GCTAGC 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 2 cut(s) 164, 223
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BamHI GGATCC 1 cut(s) 499
BbvI GCAGC 3 cut(s) 195, 217, 296
BccI CCATC 1 cut(s) 490
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 2 cut(s) 227, 435
BciVI GTATCC 1 cut(s) 388
BclI TGATCA 2 cut(s) 108, 471
BcnI CCSGG 1 cut(s) 629
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 3 cut(s) 318, 423, 485
BfuAI ACCTGC 1 cut(s) 16
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 4 cut(s) 206, 209, 310, 329
BlpI GCTNAGC 1 cut(s) 258
BlsI GCNGC 4 cut(s) 207, 210, 311, 330
Bme1390I CCNGG 3 cut(s) 227, 435, 629
Bme18I GGWCC 2 cut(s) 164, 223
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 3 cut(s) 10, 164, 223
BmiI GGNNCC 1 cut(s) 501
BmrFI CCNGG 3 cut(s) 227, 435, 629
BmsI GCATC 2 cut(s) 394, 536
BmtI GCTAGC 1 cut(s) 321
Bpu1102I GCTNAGC 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 629
Bsa29I ATCGAT 1 cut(s) 530
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 391
Bse1I ACTGG 1 cut(s) 80
BseBI CCWGG 2 cut(s) 227, 435
BseCI ATCGAT 1 cut(s) 530
BseLI CCNNNNNNNGG 2 cut(s) 25, 391
BseMII CTCAG 2 cut(s) 249, 255
BseNI ACTGG 1 cut(s) 80
BseXI GCAGC 3 cut(s) 195, 217, 296
BshFI GGCC 1 cut(s) 12
BshVI ATCGAT 1 cut(s) 530
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 628
BslFI GGGAC 2 cut(s) 69, 368
BslI CCNNNNNNNGG 2 cut(s) 25, 391
BsmAI GTCTC 1 cut(s) 20
BsmBI CGTCTC 1 cut(s) 20
BsmFI GGGAC 2 cut(s) 69, 368
BsnI GGCC 1 cut(s) 12
BsoBI CYCGRG 1 cut(s) 213
Bsp143I GATC 5 cut(s) 108, 186, 349, 471, 499
Bsp1720I GCTNAGC 1 cut(s) 258
BspACI CCGC 1 cut(s) 328
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 2 cut(s) 250, 256
BspDI ATCGAT 1 cut(s) 530
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 501
BspMI ACCTGC 1 cut(s) 16
BspOI GCTAGC 1 cut(s) 321
BspPI GGATC 2 cut(s) 494, 507
BsrI ACTGG 1 cut(s) 80
BssMI GATC 5 cut(s) 108, 186, 349, 471, 499
Bst2UI CCWGG 2 cut(s) 227, 435
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 59, 258, 264
BstENI CCTNNNNNAGG 1 cut(s) 23
BstKTI GATC 5 cut(s) 111, 189, 352, 474, 502
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 5 cut(s) 108, 186, 349, 471, 499
BstMWI GCNNNNNNNGC 3 cut(s) 309, 318, 645
BstNI CCWGG 2 cut(s) 227, 435
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 3 cut(s) 225, 433, 627
BstV1I GCAGC 3 cut(s) 195, 217, 296
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
Bsu15I ATCGAT 1 cut(s) 530
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 1 cut(s) 12
BsuTUI ATCGAT 1 cut(s) 530
BtsI GCAGTG 2 cut(s) 424, 646
BtsIMutI CAGTG 2 cut(s) 424, 646
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 319
CaiI CAGNNNCTG 1 cut(s) 86
CciI TCATGA 1 cut(s) 289
Cfr13I GGNCC 3 cut(s) 10, 164, 223
ClaI ATCGAT 1 cut(s) 530
Csp6I GTAC 1 cut(s) 115
CviAII CATG 4 cut(s) 170, 290, 475, 507
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 3 cut(s) 59, 258, 264
DpnI GATC 5 cut(s) 110, 188, 351, 473, 501
DpnII GATC 5 cut(s) 108, 186, 349, 471, 499
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 164, 223
Eco57I CTGAAG 2 cut(s) 108, 344
Eco88I CYCGRG 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 225, 433
EcoT22I ATGCAT 2 cut(s) 199, 529
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 4 cut(s) 173, 293, 478, 510
FaqI GGGAC 2 cut(s) 69, 368
FatI CATG 4 cut(s) 169, 289, 474, 506
FbaI TGATCA 2 cut(s) 108, 471
Fnu4HI GCNGC 4 cut(s) 206, 209, 310, 329
Fsp4HI GCNGC 4 cut(s) 206, 209, 310, 329
FspBI CTAG 3 cut(s) 318, 423, 485
GluI GCNGC 4 cut(s) 206, 209, 310, 329
HaeIII GGCC 1 cut(s) 12
HapII CCGG 1 cut(s) 628
Hin1II CATG 4 cut(s) 173, 293, 478, 510
HinfI GANTC 3 cut(s) 66, 430, 511
HpaII CCGG 1 cut(s) 628
Hpy166II GTNNAC 2 cut(s) 340, 550
Hpy188I TCNGA 2 cut(s) 88, 191
Hpy188III TCNNGA 3 cut(s) 215, 290, 469
Hpy8I GTNNAC 2 cut(s) 340, 550
HpyAV CCTTC 1 cut(s) 513
HpyCH4V TGCA 7 cut(s) 25, 197, 345, 417, 527, 600, 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 309, 318, 645
HpyF3I CTNAG 3 cut(s) 59, 258, 264
Hsp92II CATG 4 cut(s) 173, 293, 478, 510
Ksp22I TGATCA 2 cut(s) 108, 471
Kzo9I GATC 5 cut(s) 108, 186, 349, 471, 499
LmnI GCTCC 2 cut(s) 308, 604
Lsp1109I GCAGC 3 cut(s) 195, 217, 296
LweI GCATC 2 cut(s) 394, 536
MaeI CTAG 3 cut(s) 318, 423, 485
MalI GATC 5 cut(s) 110, 188, 351, 473, 501
MboI GATC 5 cut(s) 108, 186, 349, 471, 499
MboII GAAGA 2 cut(s) 101, 133
MflI RGATCY 1 cut(s) 499
MluCI AATT 6 cut(s) 4, 246, 276, 412, 461, 655
MlyI GAGTC 1 cut(s) 505
MnlI CCTC 6 cut(s) 122, 222, 307, 385, 476, 482
Mph1103I ATGCAT 2 cut(s) 199, 529
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 3 cut(s) 104, 174, 294
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 1 cut(s) 628
MspR9I CCNGG 3 cut(s) 227, 435, 629
MvaI CCWGG 2 cut(s) 227, 435
MwoI GCNNNNNNNGC 3 cut(s) 309, 318, 645
NciI CCSGG 1 cut(s) 629
NdeII GATC 5 cut(s) 108, 186, 349, 471, 499
NheI GCTAGC 1 cut(s) 317
NlaIII CATG 4 cut(s) 173, 293, 478, 510
NlaIV GGNNCC 1 cut(s) 501
NsiI ATGCAT 2 cut(s) 199, 529
NspI RCATGY 1 cut(s) 173
PaeR7I CTCGAG 1 cut(s) 213
PagI TCATGA 1 cut(s) 289
PfeI GAWTC 2 cut(s) 66, 430
PfoI TCCNGGA 1 cut(s) 433
PkrI GCNGC 4 cut(s) 207, 210, 311, 330
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PshBI ATTAAT 1 cut(s) 279
PsiI TTATAA 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 225, 433
PspGI CCWGG 2 cut(s) 225, 433
PspN4I GGNNCC 1 cut(s) 501
PspPI GGNCC 3 cut(s) 10, 164, 223
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 499
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 3 cut(s) 104, 174, 294
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 4 cut(s) 206, 209, 310, 329
Sau3AI GATC 5 cut(s) 108, 186, 349, 471, 499
Sau96I GGNCC 3 cut(s) 10, 164, 223
SchI GAGTC 1 cut(s) 505
ScrFI CCNGG 3 cut(s) 227, 435, 629
SetI ASST 6 cut(s) 30, 210, 225, 231, 524, 650
SfaNI GCATC 2 cut(s) 394, 536
Sfr274I CTCGAG 1 cut(s) 213
SinI GGWCC 2 cut(s) 164, 223
SlaI CTCGAG 1 cut(s) 213
SmiMI CAYNNNNRTG 3 cut(s) 104, 174, 294
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 6 cut(s) 4, 246, 276, 412, 461, 655
SsiI CCGC 1 cut(s) 328
SspMI CTAG 3 cut(s) 318, 423, 485
StyD4I CCNGG 3 cut(s) 225, 433, 627
TaqI TCGA 3 cut(s) 144, 214, 530
TasI AATT 6 cut(s) 4, 246, 276, 412, 461, 655
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 2 cut(s) 66, 430
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 2 cut(s) 424, 646
TseI GCWGC 3 cut(s) 205, 208, 309
TspDTI ATGAA 3 cut(s) 17, 192, 495
TspRI CASTG 2 cut(s) 424, 646
VpaK11BI GGWCC 2 cut(s) 164, 223
VspI ATTAAT 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 23
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 173
XhoI CTCGAG 1 cut(s) 213
XspI CTAG 3 cut(s) 318, 423, 485
Zsp2I ATGCAT 2 cut(s) 199, 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.