Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012229.1

Orthogroup ID

OG0015644

Physical Location & Seq

Genomic Coordinates Reverse (-)

51259 .. 52462

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012229.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggctgaacagaaggaaatacagatcccaaaggttaaacttggaattcaagggtttcaaaattggggtttggatgcacgtacgggtttgacttttgtcaagtatcctcgtgctgaagaggatggaatctccattataaagcatcccttcagtaaaggaatcactttttttgacacatctgatatgtatggaactgatcatgccaatgaaattcttgttggcaaggccttgaagcagttgccgagagaaaaggttcaattagccacgaagtttggtgttgtaagcttaggaccttctcgtttggtgataaacggaactccggagtatgtcctgtcatgttgcgaggctagcatgaagcgtcttggtgtcgactacattgatctgtactattatcaccgcattgaccaaacggtgccgatagaggaaactagcaggttcaatcctttgaacttgcctgcatcctttgaatcctacatcctgaatcttgaatcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

164

Amino Acids

18.52

Weight (kDa)

5.93

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03110
malus_domestica	MD04G1223000.v1.1
rosa_chinensis	RchiOBHm_Chr3g0451201 RchiOBHm_Chr3g0451311
rosa_multiflora	Rmu_sc0012229.1_g000013 Rmu_sc0021276.1_g000001 Rmu_sc0023997.1_g000001
rosa_roxburghii	Rroxscaffold_163G00450820 Rroxscaffold_6G00428670 Rroxscaffold_6G00428700
rosa_samantha	Rh3AG036000 Rh3AG036100 Rh3CG035100 Rh3CG035200 Rh5AG273400 Rh5AG401300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	369
AccIII	TCCGGA	1 cut(s)	319
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	1 cut(s)	19
AcsI	RAATTY	2 cut(s)	45, 210
AcuI	CTGAAG	2 cut(s)	133, 135
AfaI	GTAC	2 cut(s)	82, 386
AgsI	TTSAA	8 cut(s)	50, 59, 232, 257, 439, 448, 467, 488
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
AlwI	GGATC	1 cut(s)	19
Aor13HI	TCCGGA	1 cut(s)	319
AoxI	GGCC	1 cut(s)	225
ApoI	RAATTY	2 cut(s)	45, 210
Asp700I	GAANNNNTTC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	316, 386
AsuNHI	GCTAGC	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	412
BauI	CACGAG	1 cut(s)	108
BccI	CCATC	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	114
BclI	TGATCA	1 cut(s)	196
BfaI	CTAG	2 cut(s)	348, 429
BfuAI	ACCTGC	1 cut(s)	423
BfuI	GTATCC	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	414
BmsI	GCATC	3 cut(s)	64, 151, 467
BmtI	GCTAGC	1 cut(s)	351
BoxI	GACNNNNGTC	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	286
BsaAI	YACGTR	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	319
BseAI	TCCGGA	1 cut(s)	319
BseGI	GGATG	5 cut(s)	79, 127, 142, 458, 474
BshFI	GGCC	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	320
BsiWI	CGTACG	1 cut(s)	80
BsnI	GGCC	1 cut(s)	227
Bsp13I	TCCGGA	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	24, 196, 379
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	1 cut(s)	227
BspEI	TCCGGA	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	414
BspMI	ACCTGC	1 cut(s)	423
BspOI	GCTAGC	1 cut(s)	351
BspPI	GGATC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	412
BssMI	GATC	3 cut(s)	24, 196, 379
BssSI	CACGAG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	111
BstBAI	YACGTR	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	349, 456
BstDEI	CTNAG	1 cut(s)	286
BstF5I	GGATG	5 cut(s)	79, 127, 142, 458, 474
BstKTI	GATC	3 cut(s)	27, 199, 382
BstMBI	GATC	3 cut(s)	24, 196, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstPAI	GACNNNNGTC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	5 cut(s)	79, 127, 142, 458, 474
BveI	ACCTGC	1 cut(s)	423
Cac8I	GCNNGC	2 cut(s)	349, 456
Cfr13I	GGNCC	1 cut(s)	290
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	81, 385
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	3 cut(s)	200, 336, 352
CviJI	RGCY	5 cut(s)	5, 227, 263, 285, 347
CviKI_1	RGCY	5 cut(s)	5, 227, 263, 285, 347
CviQI	GTAC	2 cut(s)	81, 385
DdeI	CTNAG	1 cut(s)	286
DpnI	GATC	3 cut(s)	26, 198, 381
DpnII	GATC	3 cut(s)	24, 196, 379
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	2 cut(s)	133, 135
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	45
FaeI	CATG	3 cut(s)	203, 339, 355
FaiI	YATR	7 cut(s)	137, 185, 189, 201, 327, 337, 353
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FatI	CATG	3 cut(s)	199, 335, 351
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	369
FokI	GGATG	5 cut(s)	86, 129, 134, 445, 461
FspBI	CTAG	2 cut(s)	348, 429
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	1 cut(s)	320
HgaI	GACGC	1 cut(s)	347
Hin1II	CATG	3 cut(s)	203, 339, 355
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	5 cut(s)	126, 159, 467, 481, 488
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	2 cut(s)	316, 386
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	4 cut(s)	320, 478, 485, 492
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	3 cut(s)	7, 157, 303
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	77, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpyF3I	CTNAG	1 cut(s)	286
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	203, 339, 355
Kpn2I	TCCGGA	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	3 cut(s)	24, 196, 379
LpnPI	CCDG	5 cut(s)	333, 344, 418, 468, 491
LweI	GCATC	3 cut(s)	64, 151, 467
MaeI	CTAG	2 cut(s)	348, 429
MaeII	ACGT	1 cut(s)	79
MalI	GATC	3 cut(s)	26, 198, 381
MboI	GATC	3 cut(s)	24, 196, 379
MboII	GAAGA	1 cut(s)	128
MflI	RGATCY	1 cut(s)	24
MluCI	AATT	4 cut(s)	45, 61, 210, 257
MnlI	CCTC	4 cut(s)	112, 117, 337, 415
MroI	TCCGGA	1 cut(s)	319
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	348
NdeII	GATC	3 cut(s)	24, 196, 379
NheI	GCTAGC	1 cut(s)	347
NlaIII	CATG	3 cut(s)	203, 339, 355
NlaIV	GGNNCC	1 cut(s)	414
NmeAIII	GCCGAG	1 cut(s)	267
PceI	AGGCCT	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	5 cut(s)	126, 159, 467, 481, 488
Pfl23II	CGTACG	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	80
PpuMI	RGGWCCY	1 cut(s)	290
PshAI	GACNNNNGTC	1 cut(s)	95
PsiI	TTATAA	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	290
PspLI	CGTACG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	290
PspPPI	RGGWCCY	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	24
RsaI	GTAC	2 cut(s)	82, 386
RsaNI	GTAC	2 cut(s)	81, 385
RseI	CAYNNNNRTG	1 cut(s)	204
SalI	GTCGAC	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	24, 196, 379
Sau96I	GGNCC	1 cut(s)	290
SetI	ASST	6 cut(s)	36, 82, 255, 287, 295, 437
SfaNI	GCATC	3 cut(s)	64, 151, 467
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	45, 61, 210, 257
SseBI	AGGCCT	1 cut(s)	227
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	2 cut(s)	348, 429
StuI	AGGCCT	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	369
TasI	AATT	4 cut(s)	45, 61, 210, 257
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	5 cut(s)	126, 159, 467, 481, 488
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TspDTI	ATGAA	2 cut(s)	222, 368
TspGWI	ACGGA	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	2 cut(s)	45, 210
XmiI	GTMKAC	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	348, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.