Rroxscaffold_6G00428700

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015644
Physical Location & Seq
Forward (+)
49060624 .. 49069461
8838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428700.1

Sequence Viewer

Length: 432 bp
ATGGTTGAGGATGAGGGAGTCCAAATTCCGAAAGCGCAACTGGGAAGTCAGGGATTTGAGGTTTCCAAGCTGGGATTAGGGTGTAGATGGCTTACTGGGAAATTCAATGAAGCTCCAGTGGCTGAAGAGCTTGCATTATCAATCATCAAGCACGCATTCGATAAAGGAATAACATTCTTTGATACAGCAGATATCTATGGACCACATACCAATGAAATTTTGATCGGAAAGACTGCATTGAGGCAGTTGCCTAGGGATAAAGTTCAGTTGGCTACAAAGTTCGGCGTCGTAAGAATTGAGCCCGATGAACGGAGGATAATTAATGGGACTCCCGAGTATGTCCGCTCCGCTGCGAGGCTAGCCCGAAGCGTCTTGATGTCGACTACATTGATCTTTACTATCAGCACCGCGTGGACATATCAATCCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

143

Amino Acids

15.87

Weight (kDa)

7.87

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 24 - 112 6e-14 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 345
AccI GTMKAC 1 cut(s) 380
AccII CGCG 1 cut(s) 410
AciI CCGC 3 cut(s) 343, 348, 408
AcsI RAATTY 3 cut(s) 24, 101, 216
AcuI CTGAAG 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 285
AdeI CACNNNGTG 1 cut(s) 411
AfiI CCNNNNNNNGG 2 cut(s) 309, 354
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 3 cut(s) 70, 113, 130
AluI AGCT 3 cut(s) 70, 113, 130
AlwNI CAGNNNCTG 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 3 cut(s) 24, 101, 216
AseI ATTAAT 1 cut(s) 321
AspA2I CCTAGG 1 cut(s) 251
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 200
AsuNHI GCTAGC 1 cut(s) 358
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 1 cut(s) 200
AvrII CCTAGG 1 cut(s) 251
BanII GRGCYC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 337
BccI CCATC 1 cut(s) 81
BfaI CTAG 2 cut(s) 252, 359
BisI GCNGC 1 cut(s) 351
BlnI CCTAGG 1 cut(s) 251
BlsI GCNGC 1 cut(s) 352
Bme18I GGWCC 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 200
BmrI ACTGGG 2 cut(s) 50, 105
BmtI GCTAGC 1 cut(s) 362
BmuI ACTGGG 2 cut(s) 50, 105
BpmI CTGGAG 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 251
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 354
Bse1I ACTGG 3 cut(s) 45, 100, 116
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 2 cut(s) 309, 354
BseNI ACTGG 3 cut(s) 45, 100, 116
BseXI GCAGC 1 cut(s) 337
BseYI CCCAGC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 410
BsiHKCI CYCGRG 1 cut(s) 332
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 2 cut(s) 309, 354
BsmFI GGGAC 1 cut(s) 340
BsmI GAATGC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 2 cut(s) 222, 390
BspACI CCGC 3 cut(s) 343, 348, 408
BspFNI CGCG 1 cut(s) 410
BspOI GCTAGC 1 cut(s) 362
BspQI GCTCTTC 1 cut(s) 120
BsrBI CCGCTC 1 cut(s) 345
BsrI ACTGG 3 cut(s) 45, 100, 116
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 2 cut(s) 222, 390
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 285
BstC8I GCNNGC 3 cut(s) 132, 153, 360
BstF5I GGATG 1 cut(s) 16
BstFNI CGCG 1 cut(s) 410
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 2 cut(s) 225, 393
BstMBI GATC 2 cut(s) 222, 390
BstMWI GCNNNNNNNGC 2 cut(s) 119, 359
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 1 cut(s) 337
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 3 cut(s) 132, 153, 360
CaiI CAGNNNCTG 1 cut(s) 122
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 2 cut(s) 274, 358
CviJI RGCY 9 cut(s) 70, 91, 113, 122, 130, 272, 301, 358, 362
CviKI_1 RGCY 9 cut(s) 70, 91, 113, 122, 130, 272, 301, 358, 362
DpnI GATC 2 cut(s) 224, 392
DpnII GATC 2 cut(s) 222, 390
DraIII CACNNNGTG 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 303
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 332
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 251
FaiI YATR 5 cut(s) 198, 207, 339, 418, 430
FaqI GGGAC 1 cut(s) 340
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 1 cut(s) 23
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 2 cut(s) 252, 359
GlaI GCGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 351
GsaI CCCAGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 99
HgaI GACGC 2 cut(s) 274, 358
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 285
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HinfI GANTC 2 cut(s) 18, 328
Hpy166II GTNNAC 2 cut(s) 381, 414
Hpy188I TCNGA 2 cut(s) 30, 227
Hpy188III TCNNGA 2 cut(s) 332, 373
Hpy8I GTNNAC 2 cut(s) 381, 414
Hpy99I CGWCG 1 cut(s) 290
HpyCH4V TGCA 2 cut(s) 134, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 359
Hsp92I GRCGYC 1 cut(s) 285
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 222, 390
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 118, 350
LpnPI CCDG 5 cut(s) 26, 35, 56, 81, 129
Lsp1109I GCAGC 1 cut(s) 337
MaeI CTAG 2 cut(s) 252, 359
MalI GATC 2 cut(s) 224, 392
MbiI CCGCTC 1 cut(s) 345
MboI GATC 2 cut(s) 222, 390
MboII GAAGA 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 5 cut(s) 24, 101, 216, 294, 318
MlyI GAGTC 2 cut(s) 27, 322
MnlI CCTC 5 cut(s) 7, 52, 234, 306, 348
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 350
Mva1269I GAATGC 1 cut(s) 155
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 119, 359
NdeII GATC 2 cut(s) 222, 390
NheI GCTAGC 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 2 cut(s) 26, 322
PpsI GAGTC 2 cut(s) 26, 322
PshBI ATTAAT 1 cut(s) 321
PspFI CCCAGC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 210
SalI GTCGAC 1 cut(s) 379
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 2 cut(s) 222, 390
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 2 cut(s) 27, 322
SduI GDGCHC 1 cut(s) 303
SetI ASST 4 cut(s) 63, 72, 115, 132
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 5 cut(s) 24, 101, 216, 294, 318
SsiI CCGC 3 cut(s) 343, 348, 408
SspMI CTAG 2 cut(s) 252, 359
StyI CCWWGG 1 cut(s) 251
TaqI TCGA 2 cut(s) 159, 380
TasI AATT 5 cut(s) 24, 101, 216, 294, 318
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 3 cut(s) 123, 228, 321
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 200
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 3 cut(s) 24, 101, 216
XmaJI CCTAGG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 380
XspI CTAG 2 cut(s) 252, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.