Rmu_sc0021276.1_g000001

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021276.1
OG0015644
Physical Location & Seq
Forward (+)
488 .. 1426
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021276.1_g000001.1.cds

Sequence Viewer

Length: 470 bp
atggctgaacagaaggaagtacagatcccaaaggttaaacttggaactcaaggatttgaggtttcaaaattggggtttggatgcatgggtttgactttcgccaagtatcctggtgttgaagaggatggaatctccattataaagcatgccttcagtaaagaaatcactttctttgacacatctgatatatatggaactgatcatgccaatgaaattcttgttggcaaggccttgaagcagttgccaagagaaaaggttcaattagcctcaaagtttggtgttgtaagcttaggacctcgtttggtggtaaagggaactccggagtatgtccgatcatgctgcgaggctagcttgaagcgtcttggtgtcgactacattgatctctactattatcaccgcattgaccaaacggtgccaatagaggaaactatgactgagctgaagaaacttgtggaagaaggaaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

156

Amino Acids

17.46

Weight (kDa)

6.32

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 412
AccI GTMKAC 1 cut(s) 369
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 1 cut(s) 397
AclWI GGATC 1 cut(s) 19
AcsI RAATTY 1 cut(s) 213
AcuI CTGAAG 2 cut(s) 136, 461
AfaI GTAC 1 cut(s) 21
AgsI TTSAA 5 cut(s) 66, 119, 235, 260, 355
AjnI CCWGG 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 3 cut(s) 288, 351, 439
AluI AGCT 3 cut(s) 288, 351, 439
AlwI GGATC 1 cut(s) 19
Aor13HI TCCGGA 1 cut(s) 319
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 1 cut(s) 339
ApoI RAATTY 1 cut(s) 213
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 386
AsuNHI GCTAGC 1 cut(s) 347
AvaII GGWCC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 412
BbvI GCAGC 1 cut(s) 326
BccI CCATC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 321, 355
BciT130I CCWGG 1 cut(s) 111
BciVI GTATCC 1 cut(s) 117
BclI TGATCA 1 cut(s) 199
BfaI CTAG 1 cut(s) 348
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 71
BmtI GCTAGC 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 319
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 86, 130
BseMII CTCAG 1 cut(s) 426
BseXI GCAGC 1 cut(s) 326
BshFI GGCC 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 320
BsnI GGCC 1 cut(s) 230
Bsp13I TCCGGA 1 cut(s) 319
Bsp143I GATC 4 cut(s) 24, 199, 332, 379
BspACI CCGC 1 cut(s) 397
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 427
BspEI TCCGGA 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 414
BspOI GCTAGC 1 cut(s) 351
BspPI GGATC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 412
BssMI GATC 4 cut(s) 24, 199, 332, 379
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 147, 349
BstDEI CTNAG 2 cut(s) 289, 435
BstF5I GGATG 2 cut(s) 86, 130
BstKTI GATC 4 cut(s) 27, 202, 335, 382
BstMBI GATC 4 cut(s) 24, 199, 332, 379
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 326
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
BsuI GTATCC 1 cut(s) 117
BsuRI GGCC 1 cut(s) 230
BtsCI GGATG 2 cut(s) 86, 130
Cac8I GCNNGC 2 cut(s) 147, 349
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 20
CviAII CATG 4 cut(s) 85, 146, 203, 336
CviJI RGCY 7 cut(s) 5, 230, 266, 288, 347, 351, 439
CviKI_1 RGCY 7 cut(s) 5, 230, 266, 288, 347, 351, 439
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 2 cut(s) 289, 435
DpnI GATC 4 cut(s) 26, 201, 334, 381
DpnII GATC 4 cut(s) 24, 199, 332, 379
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 293
Eco57I CTGAAG 2 cut(s) 136, 461
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 86
FaeI CATG 4 cut(s) 88, 149, 206, 339
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 4 cut(s) 84, 145, 202, 335
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 340
FokI GGATG 2 cut(s) 93, 137
Fsp4HI GCNGC 1 cut(s) 340
FspBI CTAG 1 cut(s) 348
GluI GCNGC 1 cut(s) 340
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 320
HgaI GACGC 1 cut(s) 347
Hin1II CATG 4 cut(s) 88, 149, 206, 339
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 1 cut(s) 129
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 2 cut(s) 184, 332
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 3 cut(s) 7, 160, 452
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 2 cut(s) 289, 435
Hsp92II CATG 4 cut(s) 88, 149, 206, 339
Kpn2I TCCGGA 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 4 cut(s) 24, 199, 332, 379
LpnPI CCDG 3 cut(s) 96, 123, 333
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 1 cut(s) 71
MaeI CTAG 1 cut(s) 348
MalI GATC 4 cut(s) 26, 201, 334, 381
MboI GATC 4 cut(s) 24, 199, 332, 379
MboII GAAGA 3 cut(s) 131, 454, 467
MflI RGATCY 1 cut(s) 24
MluCI AATT 3 cut(s) 68, 213, 260
MnlI CCTC 6 cut(s) 52, 115, 277, 306, 337, 415
Mph1103I ATGCAT 1 cut(s) 86
MroI TCCGGA 1 cut(s) 319
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 36, 468
MslI CAYNNNNRTG 1 cut(s) 207
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 348
NdeII GATC 4 cut(s) 24, 199, 332, 379
NheI GCTAGC 1 cut(s) 347
NlaIII CATG 4 cut(s) 88, 149, 206, 339
NlaIV GGNNCC 1 cut(s) 414
NsiI ATGCAT 1 cut(s) 86
NspI RCATGY 1 cut(s) 149
PaeI GCATGC 1 cut(s) 149
PceI AGGCCT 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 1 cut(s) 341
PpuMI RGGWCCY 1 cut(s) 293
PsiI TTATAA 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 1 cut(s) 293
PspPPI RGGWCCY 1 cut(s) 293
PsuI RGATCY 1 cut(s) 24
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 207
SalI GTCGAC 1 cut(s) 368
SaqAI TTAA 2 cut(s) 36, 468
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 4 cut(s) 24, 199, 332, 379
Sau96I GGNCC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 111
SetI ASST 7 cut(s) 36, 63, 258, 290, 298, 353, 441
SfaNI GCATC 1 cut(s) 71
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
SphI GCATGC 1 cut(s) 149
Sse9I AATT 3 cut(s) 68, 213, 260
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 1 cut(s) 397
SspMI CTAG 1 cut(s) 348
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 412
TaqI TCGA 1 cut(s) 369
TasI AATT 3 cut(s) 68, 213, 260
TatI WGTACW 1 cut(s) 19
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 2 cut(s) 36, 468
Tru9I TTAA 2 cut(s) 36, 468
TseI GCWGC 1 cut(s) 339
TspDTI ATGAA 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 213
XceI RCATGY 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 1 cut(s) 348
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.