Rh5AG273400

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015644
Physical Location & Seq
Forward (+)
36603955 .. 36605035
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG273400.1

Sequence Viewer

Length: 429 bp
ATGAATTTGGGCCGTCTCCTTTTGCAGGTTTCCAAGTTGGGATTTGGGTGTATGGGACTTAGTGGAATCTATAATGTGCCAGTTTTTGAAGAGTTTGGCATATCAATGATCAAGTACGCATTTGACAGAGAAATAACATTCTTCGATACATCAGATGTTTATGGACCACATGCTAATGAAGTTTTGATCGGAAATGCATTGAAGCAGCTGCCTCGAGATAAGGTCCAGGTGGCTACAAAGTTTGGAATTGTAAAGGCTGAGCCTAAGAAAGTTATAATTAATGGCACTCCTGAGTATGTCCGCTCCTGCTGCGAGGCTAGCCTGAAGCAGCTTGATGTGGACTACATTGATCTTTACTATCAGCACCGGATAGATACATTAGTCCCCATAGAGGATACCATGAGTGTTATTTATTTCCCTGACCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

142

Amino Acids

16.06

Weight (kDa)

5.11

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 12 - 137 4.8e-28 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 16
AccBSI CCGCTC 1 cut(s) 303
AciI CCGC 1 cut(s) 301
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 344
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 25, 391
AgsI TTSAA 2 cut(s) 89, 202
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 2 cut(s) 208, 331
AluI AGCT 2 cut(s) 208, 331
Alw26I GTCTC 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 4 cut(s) 205, 208, 309, 328
ApoI RAATTY 1 cut(s) 4
AseI ATTAAT 1 cut(s) 279
AspS9I GGNCC 3 cut(s) 10, 164, 223
AsuNHI GCTAGC 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 2 cut(s) 164, 223
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BbvI GCAGC 4 cut(s) 195, 217, 296, 340
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 227
BciVI GTATCC 1 cut(s) 388
BclI TGATCA 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 16
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 4 cut(s) 206, 209, 310, 329
BlpI GCTNAGC 1 cut(s) 258
BlsI GCNGC 4 cut(s) 207, 210, 311, 330
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 2 cut(s) 164, 223
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 3 cut(s) 10, 164, 223
BmrFI CCNGG 1 cut(s) 227
BmtI GCTAGC 1 cut(s) 321
Bpu1102I GCTNAGC 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 366
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 391
Bse1I ACTGG 1 cut(s) 80
BseBI CCWGG 1 cut(s) 227
BseLI CCNNNNNNNGG 2 cut(s) 25, 391
BseMII CTCAG 2 cut(s) 249, 282
BseNI ACTGG 1 cut(s) 80
BseXI GCAGC 4 cut(s) 195, 217, 296, 340
BshFI GGCC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 367
BslFI GGGAC 2 cut(s) 69, 368
BslI CCNNNNNNNGG 2 cut(s) 25, 391
BsmAI GTCTC 1 cut(s) 20
BsmBI CGTCTC 1 cut(s) 20
BsmFI GGGAC 2 cut(s) 69, 368
BsnI GGCC 1 cut(s) 12
BsoBI CYCGRG 1 cut(s) 213
Bsp143I GATC 3 cut(s) 108, 186, 349
Bsp1720I GCTNAGC 1 cut(s) 258
BspACI CCGC 1 cut(s) 301
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 2 cut(s) 250, 283
BspMI ACCTGC 1 cut(s) 16
BspOI GCTAGC 1 cut(s) 321
BsrBI CCGCTC 1 cut(s) 303
BsrI ACTGG 1 cut(s) 80
BssMI GATC 3 cut(s) 108, 186, 349
Bst2UI CCWGG 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 4 cut(s) 59, 258, 264, 291
BstENI CCTNNNNNAGG 1 cut(s) 23
BstKTI GATC 3 cut(s) 111, 189, 352
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 3 cut(s) 108, 186, 349
BstMWI GCNNNNNNNGC 2 cut(s) 309, 318
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 425
BstV1I GCAGC 4 cut(s) 195, 217, 296, 340
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 1 cut(s) 12
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 319
Cfr13I GGNCC 3 cut(s) 10, 164, 223
Csp6I GTAC 1 cut(s) 115
CviAII CATG 2 cut(s) 170, 400
CviJI RGCY 8 cut(s) 12, 208, 233, 257, 262, 317, 321, 331
CviKI_1 RGCY 8 cut(s) 12, 208, 233, 257, 262, 317, 321, 331
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 4 cut(s) 59, 258, 264, 291
DpnI GATC 3 cut(s) 110, 188, 351
DpnII GATC 3 cut(s) 108, 186, 349
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 164, 223
Eco57I CTGAAG 1 cut(s) 344
Eco88I CYCGRG 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 199
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 2 cut(s) 173, 403
FaiI YATR 9 cut(s) 53, 72, 101, 162, 171, 275, 297, 389, 401
FaqI GGGAC 2 cut(s) 69, 368
FatI CATG 2 cut(s) 169, 399
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 4 cut(s) 206, 209, 310, 329
Fsp4HI GCNGC 4 cut(s) 206, 209, 310, 329
FspBI CTAG 1 cut(s) 318
GluI GCNGC 4 cut(s) 206, 209, 310, 329
HaeIII GGCC 1 cut(s) 12
HapII CCGG 1 cut(s) 367
Hin1II CATG 2 cut(s) 173, 403
HinfI GANTC 1 cut(s) 66
HpaII CCGG 1 cut(s) 367
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 2 cut(s) 154, 191
Hpy188III TCNNGA 2 cut(s) 215, 290
Hpy8I GTNNAC 1 cut(s) 340
HpyCH4V TGCA 2 cut(s) 25, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 309, 318
HpyF3I CTNAG 4 cut(s) 59, 258, 264, 291
Hsp92II CATG 2 cut(s) 173, 403
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 3 cut(s) 108, 186, 349
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 8 cut(s) 11, 93, 212, 239, 303, 319, 335, 380
Lsp1109I GCAGC 4 cut(s) 195, 217, 296, 340
MaeI CTAG 1 cut(s) 318
MalI GATC 3 cut(s) 110, 188, 351
MbiI CCGCTC 1 cut(s) 303
MboI GATC 3 cut(s) 108, 186, 349
MboII GAAGA 2 cut(s) 101, 133
MluCI AATT 3 cut(s) 4, 246, 276
MnlI CCTC 3 cut(s) 222, 307, 385
Mph1103I ATGCAT 1 cut(s) 199
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 2 cut(s) 104, 174
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 1 cut(s) 367
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 309, 318
NdeII GATC 3 cut(s) 108, 186, 349
NheI GCTAGC 1 cut(s) 317
NlaIII CATG 2 cut(s) 173, 403
NsiI ATGCAT 1 cut(s) 199
NspI RCATGY 1 cut(s) 173
PaeR7I CTCGAG 1 cut(s) 213
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 4 cut(s) 207, 210, 311, 330
PshBI ATTAAT 1 cut(s) 279
PsiI TTATAA 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspPI GGNCC 3 cut(s) 10, 164, 223
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 2 cut(s) 104, 174
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 4 cut(s) 206, 209, 310, 329
Sau3AI GATC 3 cut(s) 108, 186, 349
Sau96I GGNCC 3 cut(s) 10, 164, 223
ScrFI CCNGG 1 cut(s) 227
SetI ASST 6 cut(s) 30, 210, 225, 231, 333, 426
SfcI CTRYAG 1 cut(s) 425
Sfr274I CTCGAG 1 cut(s) 213
SinI GGWCC 2 cut(s) 164, 223
SlaI CTCGAG 1 cut(s) 213
SmiMI CAYNNNNRTG 2 cut(s) 104, 174
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 3 cut(s) 4, 246, 276
SsiI CCGC 1 cut(s) 301
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 225
TaqI TCGA 2 cut(s) 144, 214
TasI AATT 3 cut(s) 4, 246, 276
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseI GCWGC 4 cut(s) 205, 208, 309, 328
TspDTI ATGAA 2 cut(s) 17, 192
VpaK11BI GGWCC 2 cut(s) 164, 223
VspI ATTAAT 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 23
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 173
XhoI CTCGAG 1 cut(s) 213
XspI CTAG 1 cut(s) 318
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.