RchiOBHm_Chr3g0451311

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015644
Physical Location & Seq
Reverse (-)
2433504 .. 2434532
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41857

Sequence Viewer

Length: 651 bp
ATGGCTGAACAGAAGGAAATACAGATCCCAAAGGTTAAACTTGGAACTCAAGGGTTTGTGGTTTCAAAATTGGGGTTTGGATGCACGGGTTTGACTTTTGTCAAGTATCCTCGTGCTGAAGAGGATGGAATCTCCATTATAAAGCATCCCTTCAGTAAAGGAATCACTTTTTTTGACACATCTGATATGTATGGAACTGATCATGCCAATGAAATTCTTGTTGGCAAGGCCTCGAAGCAGTTGCCGAGAGAAAAGGTTCAATTAGCCACGAAGTTTGGTGTTGTAAGCTTAGGACCTTCTCGTTTGGTGATAAACGGAACTCCGGAGTATGTCCTGTCATGTTGCGAGGCTAGCCTGAAGCGTCTTGGTGTCGACTACATTGATCTGTACTATTATTACCGCATTGACCAAACAGTGCCGATAGAGGAAACTATGGGAGAGCTGAAGAAACTTGTTGATGATGGAAAGATCAAGTATATTGGGTTATCTGAAGCCAGTCCTTACACAATAAGGAGAGCACATGCAGTTCATCCCATTACAGCTGTACAAATGGAGTGGTCACTTTGGACTCGTGTTATTGAAGAAGAGATTATTCCACTTTGCAGGTATATAATTGATTCATTTCAAGATTATTTCTATTTAAAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

216

Amino Acids

24.52

Weight (kDa)

6.44

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 202 7.5e-42 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 594
AccI GTMKAC 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 1 cut(s) 400
AclWI GGATC 1 cut(s) 19
AcsI RAATTY 1 cut(s) 213
AcuI CTGAAG 5 cut(s) 136, 138, 377, 464, 510
AfaI GTAC 2 cut(s) 389, 546
AgsI TTSAA 4 cut(s) 66, 260, 581, 626
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 3 cut(s) 288, 442, 542
AluI AGCT 3 cut(s) 288, 442, 542
Alw21I GWGCWC 1 cut(s) 520
AlwI GGATC 1 cut(s) 19
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 213
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 319
AsuNHI GCTAGC 1 cut(s) 350
AvaII GGWCC 1 cut(s) 293
BauI CACGAG 2 cut(s) 111, 570
Bbv12I GWGCWC 1 cut(s) 520
BccI CCATC 2 cut(s) 119, 455
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BciVI GTATCC 1 cut(s) 117
BclI TGATCA 1 cut(s) 199
BfaI CTAG 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 594
BfuI GTATCC 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmsI GCATC 2 cut(s) 71, 154
BmtI GCTAGC 1 cut(s) 354
BoxI GACNNNNGTC 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 495
BseAI TCCGGA 1 cut(s) 322
BseGI GGATG 4 cut(s) 86, 130, 145, 529
BseNI ACTGG 1 cut(s) 495
BshFI GGCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 520
BsiSI CCGG 1 cut(s) 323
BsnI GGCC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 520
Bsp13I TCCGGA 1 cut(s) 322
Bsp1407I TGTACA 1 cut(s) 544
Bsp143I GATC 4 cut(s) 24, 199, 382, 468
BspACI CCGC 1 cut(s) 400
BspANI GGCC 1 cut(s) 230
BspEI TCCGGA 1 cut(s) 322
BspMI ACCTGC 1 cut(s) 594
BspOI GCTAGC 1 cut(s) 354
BspPI GGATC 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 544
BsrI ACTGG 1 cut(s) 495
BssMI GATC 4 cut(s) 24, 199, 382, 468
BssSI CACGAG 2 cut(s) 111, 570
Bst2BI CACGAG 2 cut(s) 111, 570
Bst4CI ACNGT 1 cut(s) 415
Bst6I CTCTTC 2 cut(s) 114, 579
BstAUI TGTACA 1 cut(s) 544
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 2 cut(s) 289, 648
BstF5I GGATG 4 cut(s) 86, 130, 145, 529
BstKTI GATC 4 cut(s) 27, 202, 385, 471
BstMBI GATC 4 cut(s) 24, 199, 382, 468
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstNSI RCATGY 1 cut(s) 524
BstPAI GACNNNNGTC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
BsuI GTATCC 1 cut(s) 117
BsuRI GGCC 1 cut(s) 230
BtsCI GGATG 4 cut(s) 86, 130, 145, 529
BtsIMutI CAGTG 1 cut(s) 420
BveI ACCTGC 1 cut(s) 594
Cac8I GCNNGC 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 1 cut(s) 350
Csp6I GTAC 2 cut(s) 388, 545
CspCI CAANNNNNGTGG 4 cut(s) 256, 291, 536, 571
CviAII CATG 3 cut(s) 203, 339, 521
CviJI RGCY 9 cut(s) 5, 230, 266, 288, 350, 354, 442, 494, 542
CviKI_1 RGCY 9 cut(s) 5, 230, 266, 288, 350, 354, 442, 494, 542
CviQI GTAC 2 cut(s) 388, 545
DdeI CTNAG 2 cut(s) 289, 648
DpnI GATC 4 cut(s) 26, 201, 384, 470
DpnII GATC 4 cut(s) 24, 199, 382, 468
DraI TTTAAA 1 cut(s) 642
Eam1104I CTCTTC 2 cut(s) 114, 579
EarI CTCTTC 2 cut(s) 114, 579
Eco147I AGGCCT 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 293
Eco57I CTGAAG 5 cut(s) 136, 138, 377, 464, 510
EcoO109I RGGNCCY 1 cut(s) 293
FaeI CATG 3 cut(s) 206, 342, 524
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 3 cut(s) 202, 338, 520
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 1 cut(s) 372
FokI GGATG 4 cut(s) 93, 132, 137, 516
FspBI CTAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 323
HgaI GACGC 1 cut(s) 350
Hin1II CATG 3 cut(s) 206, 342, 524
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 4 cut(s) 129, 162, 568, 617
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 2 cut(s) 184, 490
Hpy188III TCNNGA 2 cut(s) 323, 626
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 3 cut(s) 7, 160, 306
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 84, 524, 603
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 2 cut(s) 289, 648
Hsp92II CATG 3 cut(s) 206, 342, 524
Kpn2I TCCGGA 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 4 cut(s) 24, 199, 382, 468
LpnPI CCDG 5 cut(s) 336, 347, 368, 508, 589
LweI GCATC 2 cut(s) 71, 154
MaeI CTAG 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 558
MalI GATC 4 cut(s) 26, 201, 384, 470
MboI GATC 4 cut(s) 24, 199, 382, 468
MboII GAAGA 4 cut(s) 131, 457, 593, 596
MflI RGATCY 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 4 cut(s) 68, 213, 260, 612
MlyI GAGTC 1 cut(s) 562
MnlI CCTC 5 cut(s) 115, 120, 241, 340, 418
MroI TCCGGA 1 cut(s) 322
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 36, 641
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 351
NdeII GATC 4 cut(s) 24, 199, 382, 468
NheI GCTAGC 1 cut(s) 350
NlaIII CATG 3 cut(s) 206, 342, 524
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 558
NspI RCATGY 1 cut(s) 524
PceI AGGCCT 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 3 cut(s) 129, 162, 617
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PpuMI RGGWCCY 1 cut(s) 293
PshAI GACNNNNGTC 1 cut(s) 98
PsiI TTATAA 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 293
PspPI GGNCC 1 cut(s) 293
PspPPI RGGWCCY 1 cut(s) 293
PsuI RGATCY 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 2 cut(s) 389, 546
RsaNI GTAC 2 cut(s) 388, 545
RseI CAYNNNNRTG 1 cut(s) 207
SalI GTCGAC 1 cut(s) 371
SaqAI TTAA 2 cut(s) 36, 641
Sau3AI GATC 4 cut(s) 24, 199, 382, 468
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 562
SduI GDGCHC 1 cut(s) 520
SetI ASST 7 cut(s) 36, 258, 290, 298, 444, 544, 608
SfaNI GCATC 2 cut(s) 71, 154
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 4 cut(s) 68, 213, 260, 612
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 1 cut(s) 400
SspMI CTAG 1 cut(s) 351
StuI AGGCCT 1 cut(s) 230
TaaI ACNGT 1 cut(s) 415
TaqI TCGA 2 cut(s) 233, 372
TasI AATT 4 cut(s) 68, 213, 260, 612
TatI WGTACW 2 cut(s) 387, 544
TfiI GAWTC 3 cut(s) 129, 162, 617
Tru1I TTAA 2 cut(s) 36, 641
Tru9I TTAA 2 cut(s) 36, 641
TscAI CASTG 1 cut(s) 420
TseFI GTSAC 1 cut(s) 558
Tsp45I GTSAC 1 cut(s) 558
TspDTI ATGAA 3 cut(s) 225, 518, 609
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 1 cut(s) 420
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 213
XceI RCATGY 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 372
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.