Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005171

Physical Location & Seq

Genomic Coordinates Forward (+)

17722641 .. 17723528

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1084400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGTTCGTCGGCAGCTGACTCCTCCGAATTCAACGAGCCTCTAACCCCATTAGGTCGGTTCTTCCTCCAACCTGAAATGAACCAAATAATCCACTGCGCCATGGGCTTCACAAACCCTATAAACATAGATGCCGTCAAGTCCCACCTCAAAACCTCTCTCGTCCTCTCCCACCCACGTTTCTCAAGCCTCTTGCTTCGCCACTCCAACGGCCTCCAGCACTGGCATAAGACCACCCCCAGCGTCGACCTCGACCGCCACATTGTCGTCATCAACAATCCTGTCCTCACCACATCACCATCCGTTGACCACGAGACTGCTGTCAATGCCTACTTGGCCGACCTTTCCACCACCTCTGCTGGAATACTAGGCACCGACGTCGACAAACCCCTCTGGGAACTTCACCTTCTCATGGCCCATAACTGTGGCGTCTTCCGAATCCACCATGCATTGGGAGATGGGATGTCGCTCATGTCACTGTTCTTGGCGAGTTTCAGGGAAGTTGACCAAAAAGATGACGAAGAAAAGGGTTTAGGTGGTGGGTTTGTGAAGGAGGTGAGATTGGTGAATGGTGAAGAAAAGAATATTAACATACCAACTTTGGCTTCTGCTGGTGGGAAGAGATCAAAGAGACTAGTAGGTTTCACTGGTGGGAAGAGGTCGTGGGTTTGGTTGCTAGAGTTTGTGGAGATGCTGTGGTTTAACATGGTATTTGTGGTGGAGTTTCTGATGAGGTGCTTGTGGCTTTCTGACCAGAAAACTGAGATAAGCGGCGGCAATGGAGTTGAGCTGTGGCCAAGGAAGTTGGCCACGGCTAGGTTTTGCCTTCACGACATGAAGCTCGTCAAGAAAACTGTTCCAAATGCGGTAAGTGATTTCATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

296

Amino Acids

32.92

Weight (kDa)

6.9

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005171)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05740 FvH4_2g05740
malus_domestica	MD02G1104100.v1.1 MD05G1084200.v1.1 MD05G1084400.v1.1
prunus_persica	Prupe.8G128500_v2.0.a1 Prupe.8G128900_v2.0.a1 Prupe.8G129100_v2.0.a1
pyrus_communis	pycom05g08350 pycom10g07990
rosa_chinensis	RchiOBHm_Chr6g0256641
rosa_laevigata	RLG00000014747 RLG00000023074
rosa_multiflora	Rmu_co8379855.1_g000001 Rmu_sc0007004.1_g000003 Rmu_sc0039060.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395780 Rroxscaffold_7G00209140
rosa_rugosa	Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh3AG010700 Rh3BG010500 Rh3CG010200 Rh3DG010900 Rh5DG222300 Rh6AG083100 Rh6BG077700 Rh6CG072300 Rh6DG069500
rosa_wichuraiana	Rw6G007500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	451
AccI	GTMKAC	2 cut(s)	246, 381
AciI	CCGC	4 cut(s)	256, 771, 774, 866
AcoI	YGGCCR	3 cut(s)	336, 794, 807
AcsI	RAATTY	1 cut(s)	29
AcyI	GRCGYC	2 cut(s)	378, 429
AfiI	CCNNNNNNNGG	3 cut(s)	412, 451, 816
AgsI	TTSAA	1 cut(s)	34
AhlI	ACTAGT	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	2 cut(s)	589, 621
AluBI	AGCT	3 cut(s)	17, 790, 841
AluI	AGCT	3 cut(s)	17, 790, 841
Alw26I	GTCTC	2 cut(s)	308, 625
AoxI	GGCC	5 cut(s)	211, 336, 414, 794, 807
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	6 cut(s)	280, 288, 395, 568, 577, 584
BalI	TGGCCA	2 cut(s)	796, 809
BanI	GGYRCC	1 cut(s)	371
BauI	CACGAG	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	424
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	2 cut(s)	307, 452
BceAI	ACGGC	3 cut(s)	119, 226, 828
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BcoDI	GTCTC	2 cut(s)	308, 625
BcuI	ACTAGT	1 cut(s)	634
BfaI	CTAG	4 cut(s)	368, 635, 677, 816
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	3 cut(s)	15, 772, 775
BlsI	GCNGC	3 cut(s)	16, 773, 776
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	373
BmsI	GCATC	2 cut(s)	121, 681
BoxI	GACNNNNGTC	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	424
BpmI	CTGGAG	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	169
BsaHI	GRCGYC	2 cut(s)	378, 429
BsaJI	CCNNGG	3 cut(s)	102, 797, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	680, 710
Bsc4I	CCNNNNNNNGG	3 cut(s)	412, 451, 816
Bse1I	ACTGG	2 cut(s)	227, 652
Bse3DI	GCAATG	1 cut(s)	784
BseDI	CCNNGG	3 cut(s)	102, 797, 810
BseGI	GGATG	2 cut(s)	299, 468
BseLI	CCNNNNNNNGG	3 cut(s)	412, 451, 816
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	1 cut(s)	753
BseNI	ACTGG	2 cut(s)	227, 652
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	5 cut(s)	213, 338, 416, 796, 809
BshNI	GGYRCC	1 cut(s)	371
BsiEI	CGRYCG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	3 cut(s)	412, 451, 816
BsmAI	GTCTC	2 cut(s)	308, 625
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	5 cut(s)	213, 338, 416, 796, 809
Bsp143I	GATC	1 cut(s)	623
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	4 cut(s)	256, 771, 774, 866
BspANI	GGCC	5 cut(s)	213, 338, 416, 796, 809
BspCNI	CTCAG	1 cut(s)	754
BspLI	GGNNCC	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	784
BsrI	ACTGG	2 cut(s)	227, 652
BssECI	CCNNGG	3 cut(s)	102, 797, 810
BssMI	GATC	1 cut(s)	623
BssNI	GRCGYC	2 cut(s)	378, 429
BssSI	CACGAG	1 cut(s)	311
BssT1I	CCWWGG	2 cut(s)	102, 797
Bst2BI	CACGAG	1 cut(s)	311
Bst4CI	ACNGT	3 cut(s)	425, 480, 856
Bst6I	CTCTTC	2 cut(s)	614, 650
BstACI	GRCGYC	2 cut(s)	378, 429
BstDEI	CTNAG	1 cut(s)	762
BstDSI	CCRYGG	2 cut(s)	102, 810
BstF5I	GGATG	2 cut(s)	299, 468
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	1 cut(s)	626
BstMAI	GTCTC	2 cut(s)	308, 625
BstMBI	GATC	1 cut(s)	623
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 326, 335
BstPAI	GACNNNNGTC	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	425
BsuRI	GGCC	5 cut(s)	213, 338, 416, 796, 809
BtgI	CCRYGG	2 cut(s)	102, 810
BtsCI	GGATG	2 cut(s)	299, 468
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	4 cut(s)	94, 220, 476, 645
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	2 cut(s)	232, 418
CviAII	CATG	6 cut(s)	103, 412, 446, 472, 706, 835
DdeI	CTNAG	1 cut(s)	762
DpnI	GATC	1 cut(s)	625
DpnII	GATC	1 cut(s)	623
EaeI	YGGCCR	3 cut(s)	336, 794, 807
Eam1104I	CTCTTC	2 cut(s)	614, 650
EarI	CTCTTC	2 cut(s)	614, 650
Eco130I	CCWWGG	2 cut(s)	102, 797
EcoRI	GAATTC	1 cut(s)	29
EcoT14I	CCWWGG	2 cut(s)	102, 797
EcoT22I	ATGCAT	1 cut(s)	451
ErhI	CCWWGG	2 cut(s)	102, 797
FaeI	CATG	6 cut(s)	106, 415, 449, 475, 709, 838
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	6 cut(s)	102, 411, 445, 471, 705, 834
FblI	GTMKAC	2 cut(s)	246, 381
Fnu4HI	GCNGC	3 cut(s)	15, 772, 775
FokI	GGATG	2 cut(s)	286, 475
Fsp4HI	GCNGC	3 cut(s)	15, 772, 775
FspBI	CTAG	4 cut(s)	368, 635, 677, 816
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	3 cut(s)	15, 772, 775
GsaI	CCCAGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	5 cut(s)	213, 338, 416, 796, 809
HgaI	GACGC	2 cut(s)	232, 418
HhaI	GCGC	1 cut(s)	101
Hin1I	GRCGYC	2 cut(s)	378, 429
Hin1II	CATG	6 cut(s)	106, 415, 449, 475, 709, 838
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	4 cut(s)	247, 307, 382, 505
HindII	GTYRAC	4 cut(s)	247, 307, 382, 505
HinfI	GANTC	2 cut(s)	20, 438
HphI	GGTGA	6 cut(s)	280, 288, 395, 568, 577, 584
Hpy166II	GTNNAC	4 cut(s)	247, 307, 382, 505
Hpy188I	TCNGA	4 cut(s)	28, 437, 729, 751
Hpy188III	TCNNGA	2 cut(s)	830, 847
Hpy8I	GTNNAC	4 cut(s)	247, 307, 382, 505
Hpy99I	CGWCG	4 cut(s)	13, 248, 380, 383
HpyAV	CCTTC	3 cut(s)	416, 544, 836
HpyCH4III	ACNGT	3 cut(s)	425, 480, 856
HpyCH4IV	ACGT	2 cut(s)	178, 378
HpyCH4V	TGCA	1 cut(s)	449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 326, 335
HpyF3I	CTNAG	1 cut(s)	762
HpySE526I	ACGT	2 cut(s)	178, 378
Hsp92I	GRCGYC	2 cut(s)	378, 429
Hsp92II	CATG	6 cut(s)	106, 415, 449, 475, 709, 838
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	623
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	2 cut(s)	121, 681
MaeI	CTAG	4 cut(s)	368, 635, 677, 816
MaeII	ACGT	2 cut(s)	178, 378
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	1 cut(s)	625
MboI	GATC	1 cut(s)	623
MboII	GAAGA	6 cut(s)	55, 424, 533, 587, 631, 667
MlsI	TGGCCA	2 cut(s)	796, 809
MluCI	AATT	1 cut(s)	29
MluNI	TGGCCA	2 cut(s)	796, 809
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	94, 231
Mox20I	TGGCCA	2 cut(s)	796, 809
Mph1103I	ATGCAT	1 cut(s)	451
MscI	TGGCCA	2 cut(s)	796, 809
MseI	TTAA	2 cut(s)	588, 702
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	2 cut(s)	796, 809
MspA1I	CMGCKG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	105, 326, 335
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	623
NlaIII	CATG	6 cut(s)	106, 415, 449, 475, 709, 838
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	474
NsiI	ATGCAT	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	438
PflMI	CCANNNNNTGG	1 cut(s)	451
PkrI	GCNGC	3 cut(s)	16, 773, 776
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PshAI	GACNNNNGTC	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	423
SalI	GTCGAC	2 cut(s)	245, 380
SaqAI	TTAA	2 cut(s)	588, 702
SatI	GCNGC	3 cut(s)	15, 772, 775
Sau3AI	GATC	1 cut(s)	623
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	14
SfaNI	GCATC	2 cut(s)	121, 681
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SpeI	ACTAGT	1 cut(s)	634
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	4 cut(s)	256, 771, 774, 866
SspI	AATATT	1 cut(s)	586
SspMI	CTAG	4 cut(s)	368, 635, 677, 816
StyI	CCWWGG	2 cut(s)	102, 797
TaaI	ACNGT	3 cut(s)	425, 480, 856
TaiI	ACGT	2 cut(s)	181, 381
TaqI	TCGA	4 cut(s)	246, 252, 381, 883
TasI	AATT	1 cut(s)	29
TauI	GCSGC	2 cut(s)	774, 777
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	2 cut(s)	588, 702
Tru9I	TTAA	2 cut(s)	588, 702
TscAI	CASTG	4 cut(s)	101, 227, 483, 652
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	3 cut(s)	95, 851, 868
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	4 cut(s)	101, 227, 483, 652
Van91I	CCANNNNNTGG	1 cut(s)	451
XapI	RAATTY	1 cut(s)	29
XmiI	GTMKAC	2 cut(s)	246, 381
XspI	CTAG	4 cut(s)	368, 635, 677, 816
ZraI	GACGTC	1 cut(s)	379
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.