Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039060.1

Orthogroup ID

OG0005171

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 367

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039060.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgaaccaaataatccactgcgtcatcggcttcaaaaacccaatagacatcgactccattaaatcccaagtcaagtcctccgtcatgctcacccacccaatattctctagcctcatgatgcgtgactcccacgaccgagaacgctggcacaaaaccacccaaatcgacctcgaccgccacatcttcgtccttcaccactccgtctcctccgacattgatgacgagatcgccgtcaacgactacttggctgacctctccaccgactcggggctctctatcgacaaagccttgtgggagtttcatcttcttattgctcacaatgttgggattttccgaatccatcatgctttaggagatgggatatcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

122

Amino Acids

13.89

Weight (kDa)

5.79

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005171)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05740 FvH4_2g05740
malus_domestica	MD02G1104100.v1.1 MD05G1084200.v1.1 MD05G1084400.v1.1
prunus_persica	Prupe.8G128500_v2.0.a1 Prupe.8G128900_v2.0.a1 Prupe.8G129100_v2.0.a1
pyrus_communis	pycom05g08350 pycom10g07990
rosa_chinensis	RchiOBHm_Chr6g0256641
rosa_laevigata	RLG00000014747 RLG00000023074
rosa_multiflora	Rmu_co8379855.1_g000001 Rmu_sc0007004.1_g000003 Rmu_sc0039060.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395780 Rroxscaffold_7G00209140
rosa_rugosa	Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh3AG010700 Rh3BG010500 Rh3CG010200 Rh3DG010900 Rh5DG222300 Rh6AG083100 Rh6BG077700 Rh6CG072300 Rh6DG069500
rosa_wichuraiana	Rw6G007500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	82, 185
AvaI	CYCGRG	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	273
BccI	CCATC	2 cut(s)	348, 350
BceAI	ACGGC	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	108
BmeT110I	CYCGRG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	108
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	196
Bsh1285I	CGRYCG	2 cut(s)	136, 175
BsiEI	CGRYCG	2 cut(s)	136, 175
BsiHKCI	CYCGRG	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	114
BssMI	GATC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	225
BstMCI	CGRYCG	2 cut(s)	136, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	146
CciI	TCATGA	1 cut(s)	114
CseI	GACGC	1 cut(s)	10
CviAII	CATG	3 cut(s)	85, 115, 344
CviJI	RGCY	5 cut(s)	30, 111, 248, 271, 287
CviKI_1	RGCY	5 cut(s)	30, 111, 248, 271, 287
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	3 cut(s)	88, 118, 347
FaiI	YATR	3 cut(s)	86, 116, 345
FatI	CATG	3 cut(s)	84, 114, 343
FriOI	GRGCYC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	10
Hin1II	CATG	3 cut(s)	88, 118, 347
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	4 cut(s)	53, 125, 263, 336
HphI	GGTGA	2 cut(s)	82, 185
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	211, 335
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	88, 118, 347
Kzo9I	GATC	1 cut(s)	225
LpnPI	CCDG	1 cut(s)	130
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	2 cut(s)	175, 296
MhlI	GDGCHC	1 cut(s)	273
MlyI	GAGTC	3 cut(s)	47, 119, 257
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	5 cut(s)	88, 122, 179, 217, 263
MseI	TTAA	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	27
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	3 cut(s)	88, 118, 347
NmuCI	GTSAC	1 cut(s)	122
PagI	TCATGA	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 234
PfeI	GAWTC	1 cut(s)	336
PleI	GAGTC	3 cut(s)	47, 119, 257
PpsI	GAGTC	3 cut(s)	47, 119, 257
SaqAI	TTAA	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	225
SchI	GAGTC	3 cut(s)	47, 119, 257
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	2 cut(s)	171, 255
SfaNI	GCATC	1 cut(s)	108
SsiI	CCGC	1 cut(s)	175
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	1 cut(s)	108
TaqI	TCGA	4 cut(s)	51, 165, 171, 279
TaqII	GACCGA	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	17, 290
TspGWI	ACGGA	2 cut(s)	70, 190
TspRI	CASTG	1 cut(s)	23
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.