Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005171

Physical Location & Seq

Genomic Coordinates Forward (+)

662609 .. 662902

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG010900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCGTGACTCCCACTGCCGAGAACGTTGGCACAAAACCACCCAAATCGACCCTGACCGCCACGTCATCATCCTTCACCACCTCGTCTCCTCCGGCGTTGATGATGAGACCGCCGTCAATGACTACTTGGCCGACCTCTCCACCGACTCGGGGCTCTCTACCGACAAACCCTTGTGGGAGTTTCATATTTTGATTGCTCACAATGTTGGGATTTTCCGAATCCATCATGCTTTAGGAGATGGGATATCGCTTATGTTAATGTTTTTGGCGAGTTGCTGGAGTGCCGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

97

Amino Acids

11.03

Weight (kDa)

5.42

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005171)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05740 FvH4_2g05740
malus_domestica	MD02G1104100.v1.1 MD05G1084200.v1.1 MD05G1084400.v1.1
prunus_persica	Prupe.8G128500_v2.0.a1 Prupe.8G128900_v2.0.a1 Prupe.8G129100_v2.0.a1
pyrus_communis	pycom05g08350 pycom10g07990
rosa_chinensis	RchiOBHm_Chr6g0256641
rosa_laevigata	RLG00000014747 RLG00000023074
rosa_multiflora	Rmu_co8379855.1_g000001 Rmu_sc0007004.1_g000003 Rmu_sc0039060.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395780 Rroxscaffold_7G00209140
rosa_rugosa	Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh3AG010700 Rh3BG010500 Rh3CG010200 Rh3DG010900 Rh5DG222300 Rh6AG083100 Rh6BG077700 Rh6CG072300 Rh6DG069500
rosa_wichuraiana	Rw6G007500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AciI	CCGC	2 cut(s)	58, 111
AclI	AACGTT	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	150
AjiI	CACGTC	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	91, 101
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	156
BccI	CCATC	2 cut(s)	231, 233
BceAI	ACGGC	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	91, 101
BfaI	CTAG	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	64
BoxI	GACNNNNGTC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	2 cut(s)	91, 101
BsmBI	CGTCTC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	58, 111
BspANI	GGCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	69
BstMAI	GTCTC	2 cut(s)	91, 101
BstPAI	GACNNNNGTC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	131
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	2 cut(s)	131, 154
CviKI_1	RGCY	2 cut(s)	131, 154
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	148
EcoRV	GATATC	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	1 cut(s)	230
FaiI	YATR	3 cut(s)	186, 228, 254
FatI	CATG	1 cut(s)	226
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	1 cut(s)	230
HinfI	GANTC	3 cut(s)	8, 146, 219
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	83
HpyCH4IV	ACGT	2 cut(s)	25, 63
HpySE526I	ACGT	2 cut(s)	25, 63
Hsp92II	CATG	1 cut(s)	230
LpnPI	CCDG	3 cut(s)	66, 106, 262
MaeI	CTAG	1 cut(s)	292
MaeII	ACGT	2 cut(s)	25, 63
MaeIII	GTNAC	1 cut(s)	5
MhlI	GDGCHC	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	2, 140
MnlI	CCTC	3 cut(s)	92, 100, 146
MseI	TTAA	1 cut(s)	257
MspI	CCGG	1 cut(s)	93
NlaIII	CATG	1 cut(s)	230
NmeAIII	GCCGAG	1 cut(s)	44
NmuCI	GTSAC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	219
PleI	GAGTC	2 cut(s)	2, 140
PpsI	GAGTC	2 cut(s)	2, 140
PshAI	GACNNNNGTC	1 cut(s)	113
Psp1406I	AACGTT	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	257
SchI	GAGTC	2 cut(s)	2, 140
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	4 cut(s)	28, 66, 84, 138
SsiI	CCGC	2 cut(s)	58, 111
SspMI	CTAG	1 cut(s)	292
TaiI	ACGT	2 cut(s)	28, 66
TaqI	TCGA	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	20
XspI	CTAG	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.