Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8379855.1

Orthogroup ID

OG0005171

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1162

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8379855.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

gacgacgagaccgccgtcaacgactacctggccgacctctccaccggctcggggctccccaccgacaaacccatgtgggagttccatctcctgattgctcacaaagttgggatattccgaatccaccatgctttgggagacgggatatcgcttatgtcgatgttcttggcgagttgccggagagccgacgacgaggagaagttgccgactttggcgtcgggaaagagtgctagaggtgtgaatgagaggaagggtctgtgggttttgctgtgcgggtttgtggcaatggtgtggtttagcgtggtgtttgtggtggcgtttctggtgaggtgtttgtgggtttgtgatcggaaaactgagatcagtggcggtgatggggttgagctctggcctaggaaattagctactgcaaagtttaggcttcaagatatgaagcttgtgaagaaagctgttcctaatgcgaccatcaatgatgtactttttggggtgatttcatcagggatatcaagatacttggatcacagaaaaccaaatgctttgcctgagggtgttcaaattacaggggtagctatgactaatctaagaaagctacctggattgcaggaactatccgatttgatgagaagcaattcaggatcaagttggggcaacaagttcggcatgcttctcctacctatatattatcataactctaagagcaatggcgaccctctagcctatctcaagagatcaaaggtgatgattgacaagaagaagcaatctgtagagggtcatttctcatacaaaattgggttgtttgtgatgacctactttggaccaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

274

Amino Acids

30.51

Weight (kDa)

9.42

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005171)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05740 FvH4_2g05740
malus_domestica	MD02G1104100.v1.1 MD05G1084200.v1.1 MD05G1084400.v1.1
prunus_persica	Prupe.8G128500_v2.0.a1 Prupe.8G128900_v2.0.a1 Prupe.8G129100_v2.0.a1
pyrus_communis	pycom05g08350 pycom10g07990
rosa_chinensis	RchiOBHm_Chr6g0256641
rosa_laevigata	RLG00000014747 RLG00000023074
rosa_multiflora	Rmu_co8379855.1_g000001 Rmu_sc0007004.1_g000003 Rmu_sc0039060.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395780 Rroxscaffold_7G00209140
rosa_rugosa	Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh3AG010700 Rh3BG010500 Rh3CG010200 Rh3DG010900 Rh5DG222300 Rh6AG083100 Rh6BG077700 Rh6CG072300 Rh6DG069500
rosa_wichuraiana	Rw6G007500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	214
AccB7I	CCANNNNNTGG	1 cut(s)	133
AciI	CCGC	3 cut(s)	12, 273, 369
AclWI	GGATC	2 cut(s)	525, 643
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	2 cut(s)	51, 133
AgsI	TTSAA	2 cut(s)	425, 554
AjnI	CCWGG	2 cut(s)	27, 592
AluBI	AGCT	6 cut(s)	385, 404, 436, 449, 569, 589
AluI	AGCT	6 cut(s)	385, 404, 436, 449, 569, 589
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	2 cut(s)	2, 132
AlwI	GGATC	2 cut(s)	525, 643
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	2 cut(s)	30, 389
Asp700I	GAANNNNTTC	1 cut(s)	628
AspA2I	CCTAGG	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	815
AsuHPI	GGTGA	4 cut(s)	337, 383, 499, 748
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	815
AvrII	CCTAGG	1 cut(s)	392
AxyI	CCTNAGG	1 cut(s)	543
BanII	GRGCYC	2 cut(s)	57, 387
Bbv12I	GWGCWC	1 cut(s)	387
BccI	CCATC	3 cut(s)	93, 368, 473
BcgI	CGANNNNNNTGC	2 cut(s)	637, 671
BciT130I	CCWGG	2 cut(s)	29, 594
BcoDI	GTCTC	2 cut(s)	2, 132
BfaI	CTAG	3 cut(s)	231, 393, 713
BfmI	CTRYAG	1 cut(s)	762
BlnI	CCTAGG	1 cut(s)	392
Bme1390I	CCNGG	2 cut(s)	29, 594
Bme18I	GGWCC	1 cut(s)	815
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	815
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	2 cut(s)	29, 594
BoxI	GACNNNNGTC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	707
BsaHI	GRCGYC	1 cut(s)	215
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	392
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 133
Bse118I	RCCGGY	1 cut(s)	44
Bse21I	CCTNAGG	1 cut(s)	543
Bse3DI	GCAATG	2 cut(s)	291, 706
BseBI	CCWGG	2 cut(s)	29, 594
BseDI	CCNNGG	1 cut(s)	392
BseLI	CCNNNNNNNGG	2 cut(s)	51, 133
BseMI	GCAATG	2 cut(s)	291, 706
BseMII	CTCAG	2 cut(s)	348, 534
BseRI	GAGGAG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	32, 391
BsiHKAI	GWGCWC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	45, 178
BslI	CCNNNNNNNGG	2 cut(s)	51, 133
BsmAI	GTCTC	2 cut(s)	2, 132
BsmBI	CGTCTC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	32, 391
Bso31I	GGTCTC	1 cut(s)	2
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	57, 387
Bsp143I	GATC	5 cut(s)	346, 360, 517, 635, 728
BspACI	CCGC	3 cut(s)	12, 273, 369
BspANI	GGCC	2 cut(s)	32, 391
BspCNI	CTCAG	2 cut(s)	349, 535
BspLI	GGNNCC	1 cut(s)	56
BspPI	GGATC	2 cut(s)	525, 643
BspTNI	GGTCTC	1 cut(s)	2
BsrDI	GCAATG	2 cut(s)	291, 706
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	5 cut(s)	346, 360, 517, 635, 728
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	29, 594
BstACI	GRCGYC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	662
BstDEI	CTNAG	4 cut(s)	357, 543, 581, 693
BstKTI	GATC	5 cut(s)	349, 363, 520, 638, 731
BstMAI	GTCTC	2 cut(s)	2, 132
BstMBI	GATC	5 cut(s)	346, 360, 517, 635, 728
BstNI	CCWGG	2 cut(s)	29, 594
BstNSI	RCATGY	1 cut(s)	664
BstPAI	GACNNNNGTC	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	27, 592
BstSFI	CTRYAG	1 cut(s)	762
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	32, 391
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	662
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	815
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	476
CviAII	CATG	3 cut(s)	73, 128, 661
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	4 cut(s)	357, 543, 581, 693
DpnI	GATC	5 cut(s)	348, 362, 519, 637, 730
DpnII	GATC	5 cut(s)	346, 360, 517, 635, 728
DrdI	GACNNNNNNGTC	1 cut(s)	214
DseDI	GACNNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	392
Eco24I	GRGCYC	2 cut(s)	57, 387
Eco31I	GGTCTC	1 cut(s)	2
Eco32I	GATATC	2 cut(s)	147, 504
Eco47I	GGWCC	1 cut(s)	815
Eco53kI	GAGCTC	1 cut(s)	385
Eco81I	CCTNAGG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	385
EcoRII	CCWGG	2 cut(s)	27, 592
EcoRV	GATATC	2 cut(s)	147, 504
EcoT14I	CCWWGG	1 cut(s)	392
EcoT38I	GRGCYC	2 cut(s)	57, 387
ErhI	CCWWGG	1 cut(s)	392
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	3 cut(s)	76, 131, 664
FatI	CATG	3 cut(s)	72, 127, 660
FauI	CCCGC	1 cut(s)	266
FriOI	GRGCYC	2 cut(s)	57, 387
FspBI	CTAG	3 cut(s)	231, 393, 713
HaeIII	GGCC	2 cut(s)	32, 391
HapII	CCGG	2 cut(s)	45, 178
HgaI	GACGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	76, 131, 664
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	2 cut(s)	45, 178
HphI	GGTGA	4 cut(s)	337, 383, 499, 748
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	3 cut(s)	119, 351, 613
Hpy188III	TCNNGA	6 cut(s)	91, 219, 425, 507, 633, 724
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	4 cut(s)	8, 191, 194, 220
HpyAV	CCTTC	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	410, 601
HpyF3I	CTNAG	4 cut(s)	357, 543, 581, 693
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	3 cut(s)	76, 131, 664
Kzo9I	GATC	5 cut(s)	346, 360, 517, 635, 728
LmnI	GCTCC	1 cut(s)	60
MaeI	CTAG	3 cut(s)	231, 393, 713
MalI	GATC	5 cut(s)	348, 362, 519, 637, 730
MboI	GATC	5 cut(s)	346, 360, 517, 635, 728
MboII	GAAGA	2 cut(s)	454, 763
MhlI	GDGCHC	2 cut(s)	57, 387
MluCI	AATT	4 cut(s)	398, 555, 628, 786
MnlI	CCTC	8 cut(s)	47, 187, 227, 240, 321, 538, 720, 760
MroXI	GAANNNNTTC	1 cut(s)	628
MspI	CCGG	2 cut(s)	45, 178
MspR9I	CCNGG	2 cut(s)	29, 594
MvaI	CCWGG	2 cut(s)	29, 594
NdeII	GATC	5 cut(s)	346, 360, 517, 635, 728
NlaIII	CATG	3 cut(s)	76, 131, 664
NlaIV	GGNNCC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	664
PaeI	GCATGC	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 155
PdmI	GAANNNNTTC	1 cut(s)	628
PfeI	GAWTC	1 cut(s)	120
PflMI	CCANNNNNTGG	1 cut(s)	133
PshAI	GACNNNNGTC	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	27, 592
PspGI	CCWGG	2 cut(s)	27, 592
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	815
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
SacI	GAGCTC	1 cut(s)	387
Sau3AI	GATC	5 cut(s)	346, 360, 517, 635, 728
Sau96I	GGNCC	1 cut(s)	815
ScrFI	CCNGG	2 cut(s)	29, 594
SduI	GDGCHC	2 cut(s)	57, 387
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	815
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SphI	GCATGC	1 cut(s)	664
Sse9I	AATT	4 cut(s)	398, 555, 628, 786
SsiI	CCGC	3 cut(s)	12, 273, 369
SspMI	CTAG	3 cut(s)	231, 393, 713
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	27, 592
StyI	CCWWGG	1 cut(s)	392
TaqI	TCGA	1 cut(s)	158
TasI	AATT	4 cut(s)	398, 555, 628, 786
TatI	WGTACW	1 cut(s)	475
TfiI	GAWTC	1 cut(s)	120
TscAI	CASTG	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	446, 483
TspRI	CASTG	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	815
XceI	RCATGY	1 cut(s)	664
XmaJI	CCTAGG	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	628
XspI	CTAG	3 cut(s)	231, 393, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.