Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005171

Physical Location & Seq

Genomic Coordinates Forward (+)

24965100 .. 24965522

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG222300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCTCACCCACCCAATATTCTCAAGCCTCATGATGCGTGACTCCCACGGCCGAGAACGCTGGCACAAAACCACCCAAATCGACCCCGACCGCCACATCATCGTCCTTCACCACCCAGTCTCCTCTGGCATTGAAGACGAGACCGCCGTCAACGACTACTTGGTCGACCTCTCCACTGACTCGGGGCTCTCTACCGACAAACCCTTGTGGGAATTTCATCTTCTGATTGCTCACAATGTTGGGATTTTCCGAATCCATCATGCTTTAGGAGATGGGATATCGCTTATGTCGATGTTTTTGGCGAGTTGCTGGAGTGCCAAAGACGAGGAGAAGTTGCCAAATTTGGCTTCGAGCAAGAGTAAAGGTGTGGATAAGAATAAGGGTTTGTGGGTTTTGCTGTGTGGGTTTGTGGCAATGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

140

Amino Acids

15.67

Weight (kDa)

6.17

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WS_DGAT_cat	PF03007	16 - 117	1.7e-06	Wax ester synthase/diacylglycerol acyltransferase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005171)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05740 FvH4_2g05740
malus_domestica	MD02G1104100.v1.1 MD05G1084200.v1.1 MD05G1084400.v1.1
prunus_persica	Prupe.8G128500_v2.0.a1 Prupe.8G128900_v2.0.a1 Prupe.8G129100_v2.0.a1
pyrus_communis	pycom05g08350 pycom10g07990
rosa_chinensis	RchiOBHm_Chr6g0256641
rosa_laevigata	RLG00000014747 RLG00000023074
rosa_multiflora	Rmu_co8379855.1_g000001 Rmu_sc0007004.1_g000003 Rmu_sc0039060.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395780 Rroxscaffold_7G00209140
rosa_rugosa	Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh3AG010700 Rh3BG010500 Rh3CG010200 Rh3DG010900 Rh5DG222300 Rh6AG083100 Rh6BG077700 Rh6CG072300 Rh6DG069500
rosa_wichuraiana	Rw6G007500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	2 cut(s)	91, 144
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	212, 340
AgsI	TTSAA	1 cut(s)	134
AjuI	GAANNNNNNNTTGG	2 cut(s)	331, 363
Alw26I	GTCTC	2 cut(s)	124, 134
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	1 cut(s)	49
ApoI	RAATTY	2 cut(s)	212, 340
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	141
BccI	CCATC	2 cut(s)	264, 266
BceAI	ACGGC	2 cut(s)	64, 131
BcoDI	GTCTC	2 cut(s)	124, 134
BmeT110I	CYCGRG	1 cut(s)	181
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	110
BoxI	GACNNNNGTC	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	7
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	2 cut(s)	112, 341
BseX3I	CGGCCG	1 cut(s)	49
Bsh1285I	CGRYCG	2 cut(s)	52, 91
BshFI	GGCC	1 cut(s)	51
BsiEI	CGRYCG	2 cut(s)	52, 91
BsiHKCI	CYCGRG	1 cut(s)	181
BsmAI	GTCTC	2 cut(s)	124, 134
BsnI	GGCC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	189
BspACI	CCGC	2 cut(s)	91, 144
BspANI	GGCC	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	30
BspTNI	GGTCTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	62
BstDSI	CCRYGG	1 cut(s)	46
BstMAI	GTCTC	2 cut(s)	124, 134
BstMCI	CGRYCG	2 cut(s)	52, 91
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstPAI	GACNNNNGTC	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	141
BstZI	CGGCCG	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	62
CciI	TCATGA	1 cut(s)	30
CviAII	CATG	2 cut(s)	31, 260
CviJI	RGCY	4 cut(s)	27, 51, 187, 347
CviKI_1	RGCY	4 cut(s)	27, 51, 187, 347
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	49
EagI	CGGCCG	1 cut(s)	49
EclXI	CGGCCG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	279
Eco52I	CGGCCG	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	181
EcoRV	GATATC	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	2 cut(s)	34, 263
FaiI	YATR	3 cut(s)	32, 261, 287
FatI	CATG	2 cut(s)	30, 259
FblI	GTMKAC	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	34, 263
HincII	GTYRAC	2 cut(s)	151, 166
HindII	GTYRAC	2 cut(s)	151, 166
HinfI	GANTC	3 cut(s)	41, 179, 252
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	2 cut(s)	151, 166
Hpy188I	TCNGA	2 cut(s)	225, 251
Hpy188III	TCNNGA	1 cut(s)	31
Hpy8I	GTNNAC	2 cut(s)	151, 166
HpyAV	CCTTC	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	34, 263
LpnPI	CCDG	4 cut(s)	46, 111, 129, 295
LweI	GCATC	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	38
MboII	GAAGA	2 cut(s)	146, 212
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	2 cut(s)	212, 340
MlyI	GAGTC	2 cut(s)	35, 173
MnlI	CCTC	4 cut(s)	38, 133, 179, 319
MwoI	GCNNNNNNNGC	1 cut(s)	57
NlaIII	CATG	2 cut(s)	34, 263
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	38
PagI	TCATGA	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 287
PfeI	GAWTC	1 cut(s)	252
PleI	GAGTC	2 cut(s)	35, 173
PpsI	GAGTC	2 cut(s)	35, 173
PshAI	GACNNNNGTC	1 cut(s)	146
SalI	GTCGAC	1 cut(s)	164
SchI	GAGTC	2 cut(s)	35, 173
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	2 cut(s)	171, 367
SfaNI	GCATC	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	2 cut(s)	212, 340
SsiI	CCGC	2 cut(s)	91, 144
SspI	AATATT	1 cut(s)	18
TaqI	TCGA	4 cut(s)	81, 165, 290, 350
TasI	AATT	2 cut(s)	212, 340
TfiI	GAWTC	1 cut(s)	252
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	2 cut(s)	212, 340
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.