Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005171

Physical Location & Seq

Genomic Coordinates Forward (+)

16936468 .. 16937100

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGTTTGTCTGCGACAGCAGCAACAATCGACTCCGTCGAACCCGCGACCCCGGTTGACCGTCTCTTCCTGCAGCCCCAAATGAACCAAATAATCCACTGCGTCATCGGCTTCAAAAACCCAATAGACATCGACTCCATCAAATCCCAGGTCAAGTCCTCCCTCATGCTCACCCACCCAAGATTCTTTAGCCTCATGGTGCGTGACTCCCACGGCCAAGAATGGTGGCACAAAACCACCCAAATCGACCCCGACCGCCACGTCATCATCCTTCACGACCTCGTCTCCTCTGGTGTTGACAATGAGACTGCCGTCAACGACTACCTAGTCAACCTCTCTACCAGCTTAGGGCTCTCTACCGATAAGCCCATGTGGGAGTTTCATCTCCTGATTGCTCACAACGTTGGGATTTTCCAAATCCATCATGCTTTGGGAGATGGGATATCGCTTATGTCGATGTTTTTGGCGAGTTGCTGGAGAGCCGACGACGAGGAGAAGTTGCCGACTTTGGCGTCGGGAAAGAGTAAAGGTGTGGATAAGAATAAGGGTTTGTGGGTTTTGCTGTGTGGGTTTTTGGCAATGGTGTGGTTTAGCTTGGTGTTTGTGGTGGAGTTTGTGTTGAGGTGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

210

Amino Acids

23.52

Weight (kDa)

5.88

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WS_DGAT_cat	PF03007	70 - 172	3.3e-06	Wax ester synthase/diacylglycerol acyltransferase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005171)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05740 FvH4_2g05740
malus_domestica	MD02G1104100.v1.1 MD05G1084200.v1.1 MD05G1084400.v1.1
prunus_persica	Prupe.8G128500_v2.0.a1 Prupe.8G128900_v2.0.a1 Prupe.8G129100_v2.0.a1
pyrus_communis	pycom05g08350 pycom10g07990
rosa_chinensis	RchiOBHm_Chr6g0256641
rosa_laevigata	RLG00000014747 RLG00000023074
rosa_multiflora	Rmu_co8379855.1_g000001 Rmu_sc0007004.1_g000003 Rmu_sc0039060.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395780 Rroxscaffold_7G00209140
rosa_rugosa	Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh3AG010700 Rh3BG010500 Rh3CG010200 Rh3DG010900 Rh5DG222300 Rh6AG083100 Rh6BG077700 Rh6CG072300 Rh6DG069500
rosa_wichuraiana	Rw6G007500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	260, 326, 511
AccII	CGCG	1 cut(s)	47
AciI	CCGC	2 cut(s)	45, 256
AclI	AACGTT	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	512
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	115
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	345, 594
AluI	AGCT	2 cut(s)	345, 594
Alw26I	GTCTC	3 cut(s)	68, 289, 299
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	20, 73
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	32, 85
BccI	CCATC	3 cut(s)	146, 429, 431
BceAI	ACGGC	2 cut(s)	229, 296
BciT130I	CCWGG	1 cut(s)	149
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	3 cut(s)	68, 289, 299
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	71
BisI	GCNGC	2 cut(s)	21, 74
BlsI	GCNGC	2 cut(s)	22, 75
Bme1390I	CCNGG	2 cut(s)	53, 149
BmgBI	CACGTC	1 cut(s)	262
BmrFI	CCNGG	2 cut(s)	53, 149
BoxI	GACNNNNGTC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	496
Bpu10I	CCTNAGC	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	512
BsaJI	CCNNGG	3 cut(s)	51, 147, 211
BsaXI	ACNNNNNCTCC	6 cut(s)	119, 149, 269, 299, 602, 632
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	51, 147, 211
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	585
BseRI	GAGGAG	2 cut(s)	277, 506
BseXI	GCAGC	2 cut(s)	32, 85
Bsh1236I	CGCG	1 cut(s)	47
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	216
BsiEI	CGRYCG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	3 cut(s)	68, 289, 299
BsmBI	CGTCTC	2 cut(s)	68, 289
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	354
BspACI	CCGC	2 cut(s)	45, 256
BspANI	GGCC	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	47
BspMAI	CTGCAG	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	585
BssECI	CCNNGG	3 cut(s)	51, 147, 211
BssNI	GRCGYC	1 cut(s)	512
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	512
BstDEI	CTNAG	1 cut(s)	346
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	267
BstFNI	CGCG	1 cut(s)	47
BstMAI	GTCTC	3 cut(s)	68, 289, 299
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 108
BstNI	CCWGG	1 cut(s)	149
BstPAI	GACNNNNGTC	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	51, 147
BstSFI	CTRYAG	1 cut(s)	71
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	32, 85
BsuRI	GGCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	211
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	267
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	97
CseI	GACGC	2 cut(s)	91, 501
CspCI	CAANNNNNGTGG	2 cut(s)	206, 241
CviAII	CATG	4 cut(s)	166, 196, 370, 425
CviJI	RGCY	9 cut(s)	76, 111, 192, 216, 345, 352, 367, 482, 594
CviKI_1	RGCY	9 cut(s)	76, 111, 192, 216, 345, 352, 367, 482, 594
DdeI	CTNAG	1 cut(s)	346
DrdI	GACNNNNNNGTC	3 cut(s)	260, 326, 511
DseDI	GACNNNNNNGTC	3 cut(s)	260, 326, 511
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	147
EcoRV	GATATC	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	354
Esp3I	CGTCTC	2 cut(s)	68, 289
FaeI	CATG	4 cut(s)	169, 199, 373, 428
FaiI	YATR	5 cut(s)	167, 197, 371, 426, 452
FatI	CATG	4 cut(s)	165, 195, 369, 424
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	21, 74
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	21, 74
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	2 cut(s)	21, 74
GsuI	CTGGAG	1 cut(s)	496
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	2 cut(s)	91, 501
Hin1I	GRCGYC	1 cut(s)	512
Hin1II	CATG	4 cut(s)	169, 199, 373, 428
HincII	GTYRAC	4 cut(s)	58, 298, 316, 331
HindII	GTYRAC	4 cut(s)	58, 298, 316, 331
HinfI	GANTC	4 cut(s)	32, 134, 183, 206
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	4 cut(s)	58, 298, 316, 331
Hpy188III	TCNNGA	3 cut(s)	275, 388, 516
Hpy8I	GTNNAC	4 cut(s)	58, 298, 316, 331
Hpy99I	CGWCG	4 cut(s)	41, 488, 491, 517
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	2 cut(s)	261, 402
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 108
HpyF3I	CTNAG	1 cut(s)	346
HpySE526I	ACGT	2 cut(s)	261, 402
Hsp92I	GRCGYC	1 cut(s)	512
Hsp92II	CATG	4 cut(s)	169, 199, 373, 428
LpnPI	CCDG	8 cut(s)	66, 83, 134, 161, 276, 355, 401, 460
Lsp1109I	GCAGC	2 cut(s)	32, 85
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	2 cut(s)	261, 402
MaeIII	GTNAC	1 cut(s)	203
MboII	GAAGA	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	354
MlyI	GAGTC	3 cut(s)	26, 128, 200
MnlI	CCTC	8 cut(s)	169, 173, 203, 290, 298, 344, 484, 615
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	53, 149
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	20, 108
NciI	CCSGG	1 cut(s)	53
NlaIII	CATG	4 cut(s)	169, 199, 373, 428
NmuCI	GTSAC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 452
PfeI	GAWTC	1 cut(s)	183
PflFI	GACNNNGTC	2 cut(s)	35, 281
PkrI	GCNGC	2 cut(s)	22, 75
PleI	GAGTC	3 cut(s)	26, 128, 200
PpsI	GAGTC	3 cut(s)	26, 128, 200
PshAI	GACNNNNGTC	1 cut(s)	311
Psp1406I	AACGTT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	75
PsyI	GACNNNGTC	2 cut(s)	35, 281
SatI	GCNGC	2 cut(s)	21, 74
SchI	GAGTC	3 cut(s)	26, 128, 200
ScrFI	CCNGG	2 cut(s)	53, 149
SduI	GDGCHC	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	71
SsiI	CCGC	2 cut(s)	45, 256
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	51, 147
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	2 cut(s)	264, 405
TaqI	TCGA	5 cut(s)	30, 39, 132, 246, 455
TfiI	GAWTC	1 cut(s)	183
TscAI	CASTG	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	2 cut(s)	20, 73
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	98, 371
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	104
Tth111I	GACNNNGTC	2 cut(s)	35, 281
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.