Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005171

Physical Location & Seq

Genomic Coordinates Forward (+)

17749486 .. 17751442

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023074

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAGAGGCTGCGTGCCTTGTCGTCGTCGTCGGAGAATCAGTGCTCAATTAGGTTTCCGATGCAGGTAAGGTGGAGGAAGAGGCGATGGTGGCAATGGAGGAAGGGTGCTGCTGGAGCCGAGCTAAATGCATCAACAACCGACTCTGATGAACCCGTGACCCCGGTCCACCGTCTCTTCCTGCAACCCCAAATGAACCAAATAATCCACTGCATCATCGGCTTCAAAAACCCAATGGACATCGACTCCATCAAATCCCAGGTCAAGTCCTCCCTCATGCTCACCCACCCAAGATTCTCTAGACTCATGGTGCATGACTCTCATGGCCAAGAATGCTGGCACAAAACCACCCAAATCGACCCCGACCGCCACGTCATCGTCCTTCACGACCCCGTCTCCTCCAGTGTTGACAATGAGACTGTTGTCAACGACTACCTGGCCAACCTCTCCACCGGCTTGAGGCTCTCTATCGACAAGCCCATGTGGGAGTTTCATCTCCTGATTGCTCACAACGTTGGGATTTTCCAAATCCATCATGCTTTGGGAGATGGGATATCACTTATGTCGAAGTTTTTGGTGAGTTGCTGGAGAGCCGACGACGAGGAGAAGTTGTCGACTTTGGCATTGGGAAAGAGTAAGGGTGTGGATAAGAATATTGGTTTGTGGGTTTTGTTGTGTGGGTTTTTAGTAATGGTGTGGTTTAGCTTGGTGTTTGTGGTAGAATTTGTGTTGAGGTGTTTGTGGGTTTGTGATCACGGATGGGTGAGAGATGAAACGAGAGGCACTCTAGGTTTGGGTTTTGGTTTTTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

272

Amino Acids

31.03

Weight (kDa)

8.49

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005171)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05740 FvH4_2g05740
malus_domestica	MD02G1104100.v1.1 MD05G1084200.v1.1 MD05G1084400.v1.1
prunus_persica	Prupe.8G128500_v2.0.a1 Prupe.8G128900_v2.0.a1 Prupe.8G129100_v2.0.a1
pyrus_communis	pycom05g08350 pycom10g07990
rosa_chinensis	RchiOBHm_Chr6g0256641
rosa_laevigata	RLG00000014747 RLG00000023074
rosa_multiflora	Rmu_co8379855.1_g000001 Rmu_sc0007004.1_g000003 Rmu_sc0039060.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395780 Rroxscaffold_7G00209140
rosa_rugosa	Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh3AG010700 Rh3BG010500 Rh3CG010200 Rh3DG010900 Rh5DG222300 Rh6AG083100 Rh6BG077700 Rh6CG072300 Rh6DG069500
rosa_wichuraiana	Rw6G007500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	614
AciI	CCGC	1 cut(s)	367
AclI	AACGTT	1 cut(s)	513
AcoI	YGGCCR	2 cut(s)	325, 438
AcsI	RAATTY	1 cut(s)	722
AfiI	CCNNNNNNNGG	1 cut(s)	459
AgsI	TTSAA	1 cut(s)	226
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	258, 435
AluBI	AGCT	2 cut(s)	124, 705
AluI	AGCT	2 cut(s)	124, 705
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	3 cut(s)	179, 400, 410
AoxI	GGCC	2 cut(s)	325, 438
ApeKI	GCWGC	2 cut(s)	10, 110
ApoI	RAATTY	1 cut(s)	722
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	274, 589, 775
AvaII	GGWCC	1 cut(s)	166
BalI	TGGCCA	2 cut(s)	327, 440
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	5 cut(s)	81, 257, 540, 542, 753
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	2 cut(s)	260, 437
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	3 cut(s)	179, 400, 410
BfaI	CTAG	2 cut(s)	300, 788
BfuAI	ACCTGC	1 cut(s)	55
BisI	GCNGC	2 cut(s)	11, 111
BlsI	GCNGC	2 cut(s)	12, 112
Bme1390I	CCNGG	3 cut(s)	164, 260, 437
Bme18I	GGWCC	1 cut(s)	166
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	3 cut(s)	164, 260, 437
BmsI	GCATC	3 cut(s)	51, 140, 222
BoxI	GACNNNNGTC	2 cut(s)	164, 422
BplI	GAGNNNNNCTC	2 cut(s)	769, 801
BpmI	CTGGAG	3 cut(s)	135, 385, 607
BpuEI	CTTGAG	1 cut(s)	478
BpuMI	CCSGG	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	162, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	101
BseBI	CCWGG	2 cut(s)	260, 437
BseDI	CCNNGG	2 cut(s)	162, 258
BseGI	GGATG	1 cut(s)	764
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMI	GCAATG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	2 cut(s)	388, 617
BseXI	GCAGC	1 cut(s)	97
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	2 cut(s)	327, 440
BsiEI	CGRYCG	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	164, 453
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	3 cut(s)	179, 400, 410
BsmBI	CGTCTC	2 cut(s)	179, 400
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	2 cut(s)	327, 440
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	751
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	2 cut(s)	327, 440
BspLI	GGNNCC	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	402
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	162, 258
BssMI	GATC	1 cut(s)	751
Bst2UI	CCWGG	2 cut(s)	260, 437
Bst4CI	ACNGT	2 cut(s)	173, 421
Bst6I	CTCTTC	2 cut(s)	74, 182
BstC8I	GCNNGC	2 cut(s)	15, 338
BstF5I	GGATG	1 cut(s)	764
BstKTI	GATC	1 cut(s)	754
BstMAI	GTCTC	3 cut(s)	179, 400, 410
BstMBI	GATC	1 cut(s)	751
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 116, 219, 333
BstNI	CCWGG	2 cut(s)	260, 437
BstPAI	GACNNNNGTC	2 cut(s)	164, 422
BstSCI	CCNGG	3 cut(s)	162, 258, 435
BstV1I	GCAGC	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	327, 440
BtgZI	GCGATG	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	764
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	3 cut(s)	47, 208, 409
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	15, 338
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	166
CviAII	CATG	6 cut(s)	277, 307, 314, 323, 481, 536
DpnI	GATC	1 cut(s)	753
DpnII	GATC	1 cut(s)	751
DrdI	GACNNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	371
EaeI	YGGCCR	2 cut(s)	325, 438
Eam1104I	CTCTTC	2 cut(s)	74, 182
EarI	CTCTTC	2 cut(s)	74, 182
Eco32I	GATATC	1 cut(s)	555
Eco47I	GGWCC	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	258, 435
EcoRV	GATATC	1 cut(s)	555
EcoT22I	ATGCAT	1 cut(s)	133
Esp3I	CGTCTC	2 cut(s)	179, 400
FaeI	CATG	6 cut(s)	280, 310, 317, 326, 484, 539
FaiI	YATR	7 cut(s)	278, 308, 315, 324, 482, 537, 563
FatI	CATG	6 cut(s)	276, 306, 313, 322, 480, 535
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	2 cut(s)	11, 111
FokI	GGATG	1 cut(s)	771
Fsp4HI	GCNGC	2 cut(s)	11, 111
FspBI	CTAG	2 cut(s)	300, 788
GluI	GCNGC	2 cut(s)	11, 111
GsuI	CTGGAG	3 cut(s)	135, 385, 607
HaeIII	GGCC	2 cut(s)	327, 440
HapII	CCGG	2 cut(s)	164, 453
Hin1II	CATG	6 cut(s)	280, 310, 317, 326, 484, 539
HincII	GTYRAC	3 cut(s)	409, 427, 615
HindII	GTYRAC	3 cut(s)	409, 427, 615
HinfI	GANTC	6 cut(s)	37, 143, 245, 294, 303, 317
HpaII	CCGG	2 cut(s)	164, 453
HphI	GGTGA	3 cut(s)	274, 589, 775
Hpy166II	GTNNAC	4 cut(s)	169, 409, 427, 615
Hpy188I	TCNGA	4 cut(s)	34, 60, 148, 815
Hpy188III	TCNNGA	3 cut(s)	300, 386, 499
Hpy8I	GTNNAC	4 cut(s)	169, 409, 427, 615
Hpy99I	CGWCG	5 cut(s)	28, 31, 34, 599, 602
HpyAV	CCTTC	2 cut(s)	97, 392
HpyCH4III	ACNGT	2 cut(s)	173, 421
HpyCH4IV	ACGT	2 cut(s)	372, 513
HpyCH4V	TGCA	5 cut(s)	64, 131, 184, 213, 313
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 116, 219, 333
HpySE526I	ACGT	2 cut(s)	372, 513
Hsp92II	CATG	6 cut(s)	280, 310, 317, 326, 484, 539
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	1 cut(s)	751
LmnI	GCTCC	1 cut(s)	116
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	3 cut(s)	51, 140, 222
MaeI	CTAG	2 cut(s)	300, 788
MaeII	ACGT	2 cut(s)	372, 513
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	753
MboI	GATC	1 cut(s)	751
MboII	GAAGA	3 cut(s)	16, 91, 169
MhlI	GDGCHC	1 cut(s)	47
MlsI	TGGCCA	2 cut(s)	327, 440
MluCI	AATT	2 cut(s)	48, 722
MluNI	TGGCCA	2 cut(s)	327, 440
MlyI	GAGTC	4 cut(s)	137, 239, 297, 311
MmeI	TCCRAC	1 cut(s)	12
Mox20I	TGGCCA	2 cut(s)	327, 440
Mph1103I	ATGCAT	1 cut(s)	133
MscI	TGGCCA	2 cut(s)	327, 440
Msp20I	TGGCCA	2 cut(s)	327, 440
MspI	CCGG	2 cut(s)	164, 453
MspR9I	CCNGG	3 cut(s)	164, 260, 437
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	2 cut(s)	260, 437
MwoI	GCNNNNNNNGC	4 cut(s)	91, 116, 219, 333
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	751
NlaIII	CATG	6 cut(s)	280, 310, 317, 326, 484, 539
NlaIV	GGNNCC	1 cut(s)	118
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PctI	GAATGC	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	37, 294
PflFI	GACNNNGTC	1 cut(s)	392
PkrI	GCNGC	2 cut(s)	12, 112
PleI	GAGTC	4 cut(s)	137, 239, 297, 311
PpsI	GAGTC	4 cut(s)	137, 239, 297, 311
PshAI	GACNNNNGTC	2 cut(s)	164, 422
Psp1406I	AACGTT	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	258, 435
PspGI	CCWGG	2 cut(s)	258, 435
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	392
SalI	GTCGAC	1 cut(s)	613
SatI	GCNGC	2 cut(s)	11, 111
Sau3AI	GATC	1 cut(s)	751
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	4 cut(s)	137, 239, 297, 311
ScrFI	CCNGG	3 cut(s)	164, 260, 437
SduI	GDGCHC	1 cut(s)	47
SfaNI	GCATC	3 cut(s)	51, 140, 222
SinI	GGWCC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
Sse9I	AATT	2 cut(s)	48, 722
SsiI	CCGC	1 cut(s)	367
SspI	AATATT	1 cut(s)	655
SspMI	CTAG	2 cut(s)	300, 788
StyD4I	CCNGG	3 cut(s)	162, 258, 435
TaaI	ACNGT	2 cut(s)	173, 421
TaiI	ACGT	2 cut(s)	375, 516
TaqI	TCGA	5 cut(s)	243, 357, 471, 566, 614
TasI	AATT	2 cut(s)	48, 722
TfiI	GAWTC	2 cut(s)	37, 294
TscAI	CASTG	3 cut(s)	47, 215, 409
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	10, 110
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	5 cut(s)	17, 165, 209, 482, 786
TspGWI	ACGGA	1 cut(s)	771
TspRI	CASTG	3 cut(s)	47, 215, 409
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	1 cut(s)	722
XbaI	TCTAGA	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	614
XspI	CTAG	2 cut(s)	300, 788
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.