MD05G1176800.v1.1

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011563
Physical Location & Seq
Reverse (-)
30412568 .. 30413130
563 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1176800.v1.1.491

Sequence Viewer

Length: 375 bp
ATGTCTCACCAGGGAAGATGCAGTGCAACTCAATCCAATGTTCTTCTCCTCTTTCTCTTCCTCACCATTGTGTCTGCTCAAACAACCACCTTCACAGTTGGTGACAAATCTGGGTGGAGTTTCAACGTCGAAAACTGGACAGATGGAAAGAAGTTCAAAGCCGGCGATGAACTTGTTTTCAACTATGATCGATCCCTCCACAATGTGGCAGTTGTTGATGCCAATGAATATAGTAGTTGTAGTGCTTCTTCAAGCTCTAAGGCATTCACCACTGGCAAAGATCGCGTCAAATTATCGAAGGGACTCAACTACTTTATCTGCACCGTCCCTGGCCACTGCGATGGTGGTGTGAAGATTTCGGTTAATGCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

125

Amino Acids

13.4

Weight (kDa)

8.38

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 39 - 116 1.9e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 205
AccII CGCG 1 cut(s) 285
AclWI GGATC 1 cut(s) 186
AcoI YGGCCR 1 cut(s) 331
AdeI CACNNNGTG 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 4 cut(s) 124, 157, 181, 252
AjnI CCWGG 2 cut(s) 9, 328
AleI CACNNNNGTG 1 cut(s) 68
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 186
AoxI GGCC 1 cut(s) 331
ArsI GACNNNNNNTTYG 2 cut(s) 270, 302
AsuHPI GGTGA 3 cut(s) 55, 113, 259
BalI TGGCCA 1 cut(s) 333
BarI GAAGNNNNNNTAC 2 cut(s) 232, 264
BccI CCATC 2 cut(s) 137, 335
BciT130I CCWGG 2 cut(s) 11, 330
BcoDI GTCTC 1 cut(s) 9
Bme1390I CCNGG 2 cut(s) 11, 330
BmrFI CCNGG 2 cut(s) 11, 330
BmsI GCATC 2 cut(s) 8, 208
Bsa29I ATCGAT 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 10, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 140, 277
BseBI CCWGG 2 cut(s) 11, 330
BseCI ATCGAT 1 cut(s) 190
BseDI CCNNGG 2 cut(s) 10, 328
BseLI CCNNNNNNNGG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 140, 277
BseRI GAGGAG 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 1 cut(s) 333
BshVI ATCGAT 1 cut(s) 190
BsiSI CCGG 1 cut(s) 162
BslFI GGGAC 2 cut(s) 311, 315
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 311, 315
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 1 cut(s) 333
Bsp143I GATC 3 cut(s) 187, 191, 280
BspANI GGCC 1 cut(s) 333
BspDI ATCGAT 1 cut(s) 190
BspFNI CGCG 1 cut(s) 285
BspPI GGATC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 2 cut(s) 140, 277
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 10, 328
BssMI GATC 3 cut(s) 187, 191, 280
Bst2UI CCWGG 2 cut(s) 11, 330
Bst4CI ACNGT 2 cut(s) 97, 325
Bst6I CTCTTC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 1 cut(s) 258
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 3 cut(s) 190, 194, 283
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 187, 191, 280
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstNI CCWGG 2 cut(s) 11, 330
BstSCI CCNGG 2 cut(s) 9, 328
BstUI CGCG 1 cut(s) 285
BstXI CCANNNNNNTGG 1 cut(s) 341
Bsu15I ATCGAT 1 cut(s) 190
BsuRI GGCC 1 cut(s) 333
BsuTUI ATCGAT 1 cut(s) 190
BtgZI GCGATG 2 cut(s) 180, 354
BtsI GCAGTG 2 cut(s) 28, 334
BtsIMutI CAGTG 3 cut(s) 28, 270, 334
Cac8I GCNNGC 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 161
ClaI ATCGAT 1 cut(s) 190
CseI GACGC 1 cut(s) 274
CviJI RGCY 3 cut(s) 161, 255, 333
CviKI_1 RGCY 3 cut(s) 161, 255, 333
DdeI CTNAG 1 cut(s) 258
DpnI GATC 3 cut(s) 189, 193, 282
DpnII GATC 3 cut(s) 187, 191, 280
DraIII CACNNNGTG 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 9, 328
FaiI YATR 2 cut(s) 186, 231
FaqI GGGAC 2 cut(s) 311, 315
HaeIII GGCC 1 cut(s) 333
HapII CCGG 1 cut(s) 162
HgaI GACGC 1 cut(s) 274
HinfI GANTC 1 cut(s) 303
HpaII CCGG 1 cut(s) 162
HphI GGTGA 3 cut(s) 55, 113, 259
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 100, 292
HpyCH4III ACNGT 2 cut(s) 97, 325
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 21, 26, 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 126
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Kzo9I GATC 3 cut(s) 187, 191, 280
LpnPI CCDG 7 cut(s) 23, 96, 121, 175, 258, 315, 342
LweI GCATC 2 cut(s) 8, 208
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 101
MalI GATC 3 cut(s) 189, 193, 282
MboI GATC 3 cut(s) 187, 191, 280
MboII GAAGA 5 cut(s) 27, 35, 49, 240, 364
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 1 cut(s) 290
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 1 cut(s) 297
MnlI CCTC 3 cut(s) 59, 71, 206
Mox20I TGGCCA 1 cut(s) 333
MroNI GCCGGC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 333
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 2 cut(s) 68, 339
Msp20I TGGCCA 1 cut(s) 333
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 2 cut(s) 11, 330
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 2 cut(s) 11, 330
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 282
NaeI GCCGGC 1 cut(s) 163
NdeII GATC 3 cut(s) 187, 191, 280
NgoMIV GCCGGC 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 101
OliI CACNNNNGTG 1 cut(s) 68
PctI GAATGC 1 cut(s) 263
PdiI GCCGGC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 205
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
Psp6I CCWGG 2 cut(s) 9, 328
PspGI CCWGG 2 cut(s) 9, 328
RseI CAYNNNNRTG 2 cut(s) 68, 339
SaqAI TTAA 1 cut(s) 363
Sau3AI GATC 3 cut(s) 187, 191, 280
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 2 cut(s) 11, 330
SetI ASST 3 cut(s) 92, 129, 257
SfaNI GCATC 2 cut(s) 8, 208
SmiMI CAYNNNNRTG 2 cut(s) 68, 339
Sse9I AATT 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 9, 328
TaaI ACNGT 2 cut(s) 97, 325
TaiI ACGT 1 cut(s) 129
TaqI TCGA 3 cut(s) 129, 190, 296
TasI AATT 1 cut(s) 290
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 3 cut(s) 28, 277, 341
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 183, 240
TspRI CASTG 3 cut(s) 28, 277, 341
Van91I CCANNNNNTGG 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.