Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011563

Physical Location & Seq

Genomic Coordinates Forward (+)

48993788 .. 48994892

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1392700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAGCATACTGACTGCTGCTCCAACTTTGAGGATGTGGATGTGGATGAGCTTCGAGCATTGTGACCAGTATGCTGGGGGGATGGATAGATATCATTCAAGAAACGATCATGTGGTGTTAAAGAAAGGTATAAATTATTTCATACCTAGTGCTAGTGGATCTTATTGTGAAAAGGGAAAGAAAATTTCAATTGATGCGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009856 GO:0009908 GO:0016020 GO:0022414 GO:0031012 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044421 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046658 GO:0048046 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051704 GO:0061458 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

68

Amino Acids

7.67

Weight (kDa)

7.81

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19160
malus_domestica	MD05G1176800.v1.1 MD08G1027700.v1.1 MD15G1392700.v1.1
prunus_persica	Prupe.5G066600_v2.0.a1 Prupe.6G288900_v2.0.a1 Prupe.6G290200_v2.0.a1 Prupe.6G290300_v2.0.a1 Prupe.8G203900_v2.0.a1
pyrus_communis	pycom02g09230 pycom05g16300 pycom08g01930 pycom08g02190 pycom09g11740
rosa_multiflora	Rmu_sc0005354.1_g000004
rosa_roxburghii	Rroxscaffold_6G00397120
rosa_samantha	Rh7AG207700 Rh7CG220000 Rh7DG214800
rosa_wichuraiana	Rw7G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	99, 189
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
AlwI	GGATC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	76
BfaI	CTAG	2 cut(s)	147, 153
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmsI	GCATC	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	90
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	67
Bse8I	GATNNNNATC	1 cut(s)	90
BseGI	GGATG	4 cut(s)	39, 45, 51, 87
BseJI	GATNNNNATC	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	4
BseYI	CCCAGC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	106, 158
BspACI	CCGC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	106, 158
BstF5I	GGATG	4 cut(s)	39, 45, 51, 87
BstKTI	GATC	2 cut(s)	109, 161
BstMBI	GATC	2 cut(s)	106, 158
BstV1I	GCAGC	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	158
BstXI	CCANNNNNNTGG	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	158
BtsCI	GGATG	4 cut(s)	39, 45, 51, 87
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	1 cut(s)	51
CviKI_1	RGCY	1 cut(s)	51
DpnI	GATC	2 cut(s)	108, 160
DpnII	GATC	2 cut(s)	106, 158
Eco32I	GATATC	1 cut(s)	92
EcoRV	GATATC	1 cut(s)	92
FaeI	CATG	1 cut(s)	113
FaiI	YATR	5 cut(s)	8, 72, 111, 131, 143
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	4 cut(s)	46, 52, 58, 94
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	147, 153
GluI	GCNGC	1 cut(s)	18
GsaI	CCCAGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	113
Hpy188III	TCNNGA	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	106, 158
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	2 cut(s)	60, 80
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	147, 153
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	2 cut(s)	108, 160
MboI	GATC	2 cut(s)	106, 158
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	1 cut(s)	158
MluCI	AATT	3 cut(s)	133, 183, 189
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	1 cut(s)	24
MseI	TTAA	1 cut(s)	119
MunI	CAATTG	1 cut(s)	189
NdeII	GATC	2 cut(s)	106, 158
NlaIII	CATG	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	19
PspFI	CCCAGC	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	106, 158
SetI	ASST	3 cut(s)	53, 130, 148
SfaNI	GCATC	1 cut(s)	184
SgeI	CNNG	7 cut(s)	67, 79, 87, 111, 122, 159, 165
Sse9I	AATT	3 cut(s)	133, 183, 189
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	2 cut(s)	147, 153
TaqI	TCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	133, 183, 189
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	130
XapI	RAATTY	1 cut(s)	183
XspI	CTAG	2 cut(s)	147, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.