Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0011563

Physical Location & Seq

Genomic Coordinates Reverse (-)

1639492 .. 1642240

Gene Structure 2749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCAGTTGGAATGAACAAAATTTTGGTGATTGGAATCGGCCTTTTTGTCAGTTGTTTGCTGCTCCGATGCGAAGAAGTTGATGGAAAAGAATATATAGTGGGGGATGAGAAAAGATGGAGCCCTGATGCTAACTTAACCCAGTGGACTGAGGACAAGAAGTTCAAGGCTGGAGATGTTTTGGTTTTCGAATATAAAGATCCCCTTCTCATGGTAGCTGCTGTACGGGACAAATATTTGTTCGACAAGTGTGAGTTATATGCCGGCGTGATAAAACTATACACGTCAGGAAACGATCATGCGGTATTGGAGAAGGGCACAATCTACTTCGCACCTTATCCGTCTCCCTACTGTGAAAATGGAATGAAACTTACAGTTCATGTGGAAAAAAAAACCTCATCTTCTCCGTCGTTTGTCAAACACACAGAAATGGCGCTCAATCTAACCACCTCATTCCTCCATGGAACACCCTGCCCCAAGCTCCTCCCTCCCAAGAAGGTCTGCGGTGGCGGTGGGTCGTCGGCGGGGAATTGCCGCTCTGTGGTGACATGCAGGAAGAAGGAGATACACCCGCAGTTCCAAGAGGACGCGAAGGTATACTGCAAGGGGGAGCTGGTGATGACGACGGGTGGGACCCAGAAGGAGTACGTGGTGGACGTGTGGTCGGGCAACCACCCCTTCTACCTCGGAAACCGGTCGGGCATGCTCGTCGACGACGACCAGGTCGAGAAGTTCAGGAAGAAGTACGGCGAGCTCACCCAGATCATGGAGATTCCTGTCCTCAAGGGAGAGATTATTCTGCCCTCCCGCCGCAAAGCCGCCGCCGGTAAAGGCGGCAAGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31

Protein Analysis

283

Amino Acids

31.33

Weight (kDa)

8.88

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	40 - 122	2.5e-11	Plastocyanin-like domain
Ribosomal_L31	PF01197	186 - 250	2.5e-16	Ribosomal protein L31

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19160
malus_domestica	MD05G1176800.v1.1 MD08G1027700.v1.1 MD15G1392700.v1.1
prunus_persica	Prupe.5G066600_v2.0.a1 Prupe.6G288900_v2.0.a1 Prupe.6G290200_v2.0.a1 Prupe.6G290300_v2.0.a1 Prupe.8G203900_v2.0.a1
pyrus_communis	pycom02g09230 pycom05g16300 pycom08g01930 pycom08g02190 pycom09g11740
rosa_multiflora	Rmu_sc0005354.1_g000004
rosa_roxburghii	Rroxscaffold_6G00397120
rosa_samantha	Rh7AG207700 Rh7CG220000 Rh7DG214800
rosa_wichuraiana	Rw7G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	722
AccB7I	CCANNNNNTGG	1 cut(s)	766
AccBSI	CCGCTC	1 cut(s)	537
AccI	GTMKAC	2 cut(s)	597, 711
AccII	CGCG	1 cut(s)	590
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	21
AfaI	GTAC	3 cut(s)	225, 647, 746
AfiI	CCNNNNNNNGG	3 cut(s)	211, 541, 766
AflIII	ACRYGT	2 cut(s)	282, 657
AgeI	ACCGGT	1 cut(s)	693
AgsI	TTSAA	1 cut(s)	166
AhdI	GACNNNNNGTC	1 cut(s)	661
AjiI	CACGTC	2 cut(s)	285, 658
AjnI	CCWGG	1 cut(s)	720
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
AluBI	AGCT	4 cut(s)	218, 481, 613, 754
AluI	AGCT	4 cut(s)	218, 481, 613, 754
Alw21I	GWGCWC	1 cut(s)	756
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	61, 218
ApoI	RAATTY	1 cut(s)	21
AsiGI	ACCGGT	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	633
AsuHPI	GGTGA	4 cut(s)	40, 556, 628, 748
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	633
BaeGI	GKGCMC	1 cut(s)	320
BanII	GRGCYC	2 cut(s)	125, 756
Bbv12I	GWGCWC	1 cut(s)	756
BbvI	GCAGC	2 cut(s)	48, 205
BccI	CCATC	2 cut(s)	77, 111
BceAI	ACGGC	1 cut(s)	763
BcgI	CGANNNNNNTGC	2 cut(s)	691, 725
BciT130I	CCWGG	1 cut(s)	722
BcoDI	GTCTC	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	437
BisI	GCNGC	7 cut(s)	62, 219, 535, 811, 819, 822, 835
BlsI	GCNGC	7 cut(s)	63, 220, 536, 812, 820, 823, 836
Bme1390I	CCNGG	1 cut(s)	722
Bme18I	GGWCC	1 cut(s)	633
BmeRI	GACNNNNNGTC	1 cut(s)	661
BmgBI	CACGTC	2 cut(s)	285, 658
BmgT120I	GGNCC	1 cut(s)	633
BmiI	GGNNCC	3 cut(s)	122, 634, 635
BmrFI	CCNGG	1 cut(s)	722
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	2 cut(s)	59, 118
BmuI	ACTGGG	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	767
BsaAI	YACGTR	1 cut(s)	649
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	460, 685
BsaWI	WCCGGW	1 cut(s)	693
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 541, 766
Bse118I	RCCGGY	3 cut(s)	263, 693, 824
Bse1I	ACTGG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	2 cut(s)	460, 685
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	3 cut(s)	211, 541, 766
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	48, 205
Bsh1236I	CGCG	1 cut(s)	590
Bsh1285I	CGRYCG	1 cut(s)	698
BshFI	GGCC	1 cut(s)	42
BshTI	ACCGGT	1 cut(s)	693
BsiEI	CGRYCG	1 cut(s)	698
BsiHKAI	GWGCWC	1 cut(s)	756
BsiSI	CCGG	3 cut(s)	264, 694, 825
BslFI	GGGAC	2 cut(s)	242, 646
BslI	CCNNNNNNNGG	3 cut(s)	211, 541, 766
BsmAI	GTCTC	1 cut(s)	348
BsmBI	CGTCTC	1 cut(s)	348
BsmFI	GGGAC	2 cut(s)	242, 646
BsnI	GGCC	1 cut(s)	42
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	3 cut(s)	125, 320, 756
Bsp143I	GATC	3 cut(s)	199, 295, 762
Bsp19I	CCATGG	1 cut(s)	460
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	590
BspLI	GGNNCC	3 cut(s)	122, 634, 635
BspPI	GGATC	1 cut(s)	194
BspT104I	TTCGAA	1 cut(s)	189
BsrBI	CCGCTC	1 cut(s)	537
BsrFI	RCCGGY	3 cut(s)	263, 693, 824
BsrI	ACTGG	1 cut(s)	142
BssAI	RCCGGY	3 cut(s)	263, 693, 824
BssECI	CCNNGG	2 cut(s)	460, 685
BssMI	GATC	3 cut(s)	199, 295, 762
BssNAI	GTATAC	1 cut(s)	598
BssT1I	CCWWGG	1 cut(s)	460
Bst1107I	GTATAC	1 cut(s)	598
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	2 cut(s)	353, 376
BstBAI	YACGTR	1 cut(s)	649
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	3 cut(s)	265, 704, 752
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	460
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	590
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	3 cut(s)	202, 298, 765
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	3 cut(s)	199, 295, 762
BstMCI	CGRYCG	1 cut(s)	698
BstNI	CCWGG	1 cut(s)	722
BstNSI	RCATGY	2 cut(s)	552, 706
BstSCI	CCNGG	1 cut(s)	720
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	1 cut(s)	590
BstV1I	GCAGC	2 cut(s)	48, 205
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BstZ17I	GTATAC	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	460
BtrI	CACGTC	2 cut(s)	285, 658
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	3 cut(s)	265, 704, 752
CfoI	GCGC	1 cut(s)	436
Cfr10I	RCCGGY	3 cut(s)	263, 693, 824
Cfr13I	GGNCC	1 cut(s)	633
CseI	GACGC	1 cut(s)	596
CsiI	ACCWGGT	1 cut(s)	720
Csp6I	GTAC	3 cut(s)	224, 646, 745
CspAI	ACCGGT	1 cut(s)	693
CviAII	CATG	7 cut(s)	211, 299, 380, 461, 549, 703, 766
CviJI	RGCY	8 cut(s)	42, 123, 170, 218, 481, 613, 754, 818
CviKI_1	RGCY	8 cut(s)	42, 123, 170, 218, 481, 613, 754, 818
CviQI	GTAC	3 cut(s)	224, 646, 745
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	3 cut(s)	201, 297, 764
DpnII	GATC	3 cut(s)	199, 295, 762
DrdI	GACNNNNNNGTC	1 cut(s)	722
DriI	GACNNNNNGTC	1 cut(s)	661
DseDI	GACNNNNNNGTC	1 cut(s)	722
Eam1105I	GACNNNNNGTC	1 cut(s)	661
Ecl136II	GAGCTC	1 cut(s)	754
Eco130I	CCWWGG	1 cut(s)	460
Eco24I	GRGCYC	2 cut(s)	125, 756
Eco47I	GGWCC	1 cut(s)	633
Eco53kI	GAGCTC	1 cut(s)	754
EcoICRI	GAGCTC	1 cut(s)	754
EcoO109I	RGGNCCY	1 cut(s)	633
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	460
EcoT38I	GRGCYC	2 cut(s)	125, 756
ErhI	CCWWGG	1 cut(s)	460
Esp3I	CGTCTC	1 cut(s)	348
FaeI	CATG	7 cut(s)	214, 302, 383, 464, 552, 706, 769
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	2 cut(s)	242, 646
FatI	CATG	7 cut(s)	210, 298, 379, 460, 548, 702, 765
FauI	CCCGC	3 cut(s)	517, 579, 815
FblI	GTMKAC	2 cut(s)	597, 711
Fnu4HI	GCNGC	7 cut(s)	62, 219, 535, 811, 819, 822, 835
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	2 cut(s)	125, 756
Fsp4HI	GCNGC	7 cut(s)	62, 219, 535, 811, 819, 822, 835
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	7 cut(s)	62, 219, 535, 811, 819, 822, 835
GsuI	CTGGAG	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	3 cut(s)	264, 694, 825
HgaI	GACGC	1 cut(s)	596
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	7 cut(s)	214, 302, 383, 464, 552, 706, 769
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	2 cut(s)	36, 772
HpaII	CCGG	3 cut(s)	264, 694, 825
HphI	GGTGA	4 cut(s)	40, 556, 628, 748
Hpy166II	GTNNAC	4 cut(s)	147, 598, 655, 712
Hpy188I	TCNGA	2 cut(s)	68, 689
Hpy188III	TCNNGA	3 cut(s)	288, 727, 736
Hpy8I	GTNNAC	4 cut(s)	147, 598, 655, 712
Hpy99I	CGWCG	6 cut(s)	412, 523, 628, 713, 716, 719
HpyAV	CCTTC	7 cut(s)	215, 307, 490, 553, 586, 634, 688
HpyCH4III	ACNGT	2 cut(s)	353, 376
HpyCH4IV	ACGT	3 cut(s)	284, 648, 657
HpyCH4V	TGCA	2 cut(s)	552, 603
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	3 cut(s)	284, 648, 657
Hsp92II	CATG	7 cut(s)	214, 302, 383, 464, 552, 706, 769
HspAI	GCGC	1 cut(s)	434
KflI	GGGWCCC	1 cut(s)	633
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	199, 295, 762
LmnI	GCTCC	4 cut(s)	69, 120, 486, 610
Lsp1109I	GCAGC	2 cut(s)	48, 205
LweI	GCATC	2 cut(s)	59, 118
MabI	ACCWGGT	1 cut(s)	720
MaeII	ACGT	3 cut(s)	284, 648, 657
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	3 cut(s)	201, 297, 764
MbiI	CCGCTC	1 cut(s)	537
MboI	GATC	3 cut(s)	199, 295, 762
MboII	GAAGA	4 cut(s)	86, 393, 568, 751
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	3 cut(s)	125, 320, 756
MluCI	AATT	2 cut(s)	21, 529
MroNI	GCCGGC	1 cut(s)	263
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	3 cut(s)	264, 694, 825
MspR9I	CCNGG	1 cut(s)	722
MvaI	CCWGG	1 cut(s)	722
MvnI	CGCG	1 cut(s)	590
NaeI	GCCGGC	1 cut(s)	265
NcoI	CCATGG	1 cut(s)	460
NdeII	GATC	3 cut(s)	199, 295, 762
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	7 cut(s)	214, 302, 383, 464, 552, 706, 769
NlaIV	GGNNCC	3 cut(s)	122, 634, 635
NmuCI	GTSAC	1 cut(s)	544
NspI	RCATGY	2 cut(s)	552, 706
NspV	TTCGAA	1 cut(s)	189
PaeI	GCATGC	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	3 cut(s)	654, 714, 723
PdiI	GCCGGC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	36, 772
PflFI	GACNNNGTC	1 cut(s)	722
PflMI	CCANNNNNTGG	1 cut(s)	766
PinAI	ACCGGT	1 cut(s)	693
PkrI	GCNGC	7 cut(s)	63, 220, 536, 812, 820, 823, 836
Ppu21I	YACGTR	1 cut(s)	649
PpuMI	RGGWCCY	1 cut(s)	633
Psp124BI	GAGCTC	1 cut(s)	756
Psp5II	RGGWCCY	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	720
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	3 cut(s)	122, 634, 635
PspPI	GGNCC	1 cut(s)	633
PspPPI	RGGWCCY	1 cut(s)	633
PsuI	RGATCY	1 cut(s)	199
PsyI	GACNNNGTC	1 cut(s)	722
RsaI	GTAC	3 cut(s)	225, 647, 746
RsaNI	GTAC	3 cut(s)	224, 646, 745
RseI	CAYNNNNRTG	1 cut(s)	428
SacI	GAGCTC	1 cut(s)	756
SalI	GTCGAC	1 cut(s)	710
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	7 cut(s)	62, 219, 535, 811, 819, 822, 835
Sau3AI	GATC	3 cut(s)	199, 295, 762
Sau96I	GGNCC	1 cut(s)	633
ScrFI	CCNGG	1 cut(s)	722
SduI	GDGCHC	3 cut(s)	125, 320, 756
SexAI	ACCWGGT	1 cut(s)	720
SfaNI	GCATC	2 cut(s)	59, 118
SfuI	TTCGAA	1 cut(s)	189
SgrDI	CGTCGACG	1 cut(s)	710
SinI	GGWCC	1 cut(s)	633
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
SphI	GCATGC	1 cut(s)	706
Sse9I	AATT	2 cut(s)	21, 529
SspI	AATATT	1 cut(s)	236
SstI	GAGCTC	1 cut(s)	756
StyD4I	CCNGG	1 cut(s)	720
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	2 cut(s)	353, 376
TaiI	ACGT	3 cut(s)	287, 651, 660
TaqI	TCGA	4 cut(s)	189, 243, 711, 726
TasI	AATT	2 cut(s)	21, 529
TauI	GCSGC	5 cut(s)	537, 813, 821, 824, 837
TfiI	GAWTC	2 cut(s)	36, 772
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	2 cut(s)	61, 218
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	3 cut(s)	29, 368, 380
TspGWI	ACGGA	2 cut(s)	330, 396
TspRI	CASTG	1 cut(s)	149
Tth111I	GACNNNGTC	1 cut(s)	722
Van91I	CCANNNNNTGG	1 cut(s)	766
VpaK11BI	GGWCC	1 cut(s)	633
XapI	RAATTY	1 cut(s)	21
XceI	RCATGY	2 cut(s)	552, 706
XmiI	GTMKAC	2 cut(s)	597, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.