Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0011563

Physical Location & Seq

Genomic Coordinates Reverse (-)

6346628 .. 6347121

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAACAAATTTTTGGTGATTGGAATTGCACTTCTGGTGTGCTCCGTGCTCCAATGTGAAGAAGTCCATGGGAAAGAATATATAGTGGGAGATGAGAAAGGATGGAGAGTTGACCCTAACTTATCTCACTGGACTGATGGAAAGAAGTTCAAGACTGGAGATGTTTTGGATCCTACTCTCTTCATAGCTGGTATACGAGACAAGCATTCTTATGAAATTTGTGACATATATAATGGTGATACAATCACATATGGCTCAGGAAATGATCATGTGGTATTAAAGGCAGGCACAAAATACTTCGCAGCTGCTAATGTAAACTATTGTAGAGCCGGAGCGAAAATTAAGGTTGATGTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

120

Amino Acids

13.18

Weight (kDa)

6.06

Isoelectric Point (pI)

-0.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19160
malus_domestica	MD05G1176800.v1.1 MD08G1027700.v1.1 MD15G1392700.v1.1
prunus_persica	Prupe.5G066600_v2.0.a1 Prupe.6G288900_v2.0.a1 Prupe.6G290200_v2.0.a1 Prupe.6G290300_v2.0.a1 Prupe.8G203900_v2.0.a1
pyrus_communis	pycom02g09230 pycom05g16300 pycom08g01930 pycom08g02190 pycom09g11740
rosa_multiflora	Rmu_sc0005354.1_g000004
rosa_roxburghii	Rroxscaffold_6G00397120
rosa_samantha	Rh7AG207700 Rh7CG220000 Rh7DG214800
rosa_wichuraiana	Rw7G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	193
AclWI	GGATC	2 cut(s)	164, 177
AcsI	RAATTY	2 cut(s)	8, 216
AgsI	TTSAA	1 cut(s)	151
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	188, 305
AluI	AGCT	2 cut(s)	188, 305
Alw21I	GWGCWC	2 cut(s)	44, 51
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	164, 177
ApeKI	GCWGC	2 cut(s)	302, 305
ApoI	RAATTY	2 cut(s)	8, 216
AsuHPI	GGTGA	2 cut(s)	28, 248
BamHI	GGATCC	1 cut(s)	169
Bbv12I	GWGCWC	2 cut(s)	44, 51
BbvI	GCAGC	2 cut(s)	292, 314
BccI	CCATC	2 cut(s)	96, 131
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	192
BisI	GCNGC	2 cut(s)	303, 306
BlsI	GCNGC	2 cut(s)	304, 307
BmiI	GGNNCC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	134, 160
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	134, 160
BseXI	GCAGC	2 cut(s)	292, 314
BsiHKAI	GWGCWC	2 cut(s)	44, 51
BsiSI	CCGG	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	44, 51
Bsp143I	GATC	2 cut(s)	169, 265
Bsp19I	CCATGG	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	2 cut(s)	164, 177
BsrI	ACTGG	2 cut(s)	134, 160
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	169, 265
BssNAI	GTATAC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	67
Bst1107I	GTATAC	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	256
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	107
BstKTI	GATC	2 cut(s)	172, 268
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	2 cut(s)	169, 265
BstV1I	GCAGC	2 cut(s)	292, 314
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BstZ17I	GTATAC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	286
CviAII	CATG	2 cut(s)	68, 269
CviJI	RGCY	4 cut(s)	188, 255, 305, 329
CviKI_1	RGCY	4 cut(s)	188, 255, 305, 329
DdeI	CTNAG	1 cut(s)	256
DpnI	GATC	2 cut(s)	171, 267
DpnII	GATC	2 cut(s)	169, 265
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	2 cut(s)	71, 272
FatI	CATG	2 cut(s)	67, 268
FauNDI	CATATG	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	303, 306
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	303, 306
GluI	GCNGC	2 cut(s)	303, 306
GsuI	CTGGAG	1 cut(s)	177
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	2 cut(s)	71, 272
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	2 cut(s)	28, 248
Hpy166II	GTNNAC	3 cut(s)	112, 194, 316
Hpy188III	TCNNGA	2 cut(s)	151, 258
Hpy8I	GTNNAC	3 cut(s)	112, 194, 316
HpyCH4V	TGCA	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	256
Hsp92II	CATG	2 cut(s)	71, 272
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	169, 265
LmnI	GCTCC	3 cut(s)	47, 54, 332
LpnPI	CCDG	7 cut(s)	20, 115, 141, 174, 243, 270, 343
Lsp1109I	GCAGC	2 cut(s)	292, 314
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	2 cut(s)	171, 267
MboI	GATC	2 cut(s)	169, 265
MboII	GAAGA	2 cut(s)	71, 172
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	44, 51
MluCI	AATT	4 cut(s)	8, 24, 216, 339
MseI	TTAA	2 cut(s)	278, 342
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	205
NcoI	CCATGG	1 cut(s)	67
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	2 cut(s)	169, 265
NlaIII	CATG	2 cut(s)	71, 272
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	221
PctI	GAATGC	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	304, 307
PspN4I	GGNNCC	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	278, 342
SatI	GCNGC	2 cut(s)	303, 306
Sau3AI	GATC	2 cut(s)	169, 265
SduI	GDGCHC	2 cut(s)	44, 51
SetI	ASST	3 cut(s)	190, 307, 348
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	4 cut(s)	8, 24, 216, 339
StyI	CCWWGG	1 cut(s)	67
TasI	AATT	4 cut(s)	8, 24, 216, 339
Tru1I	TTAA	2 cut(s)	278, 342
Tru9I	TTAA	2 cut(s)	278, 342
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	302, 305
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	17, 172, 228
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	134
XapI	RAATTY	2 cut(s)	8, 216
XmiI	GTMKAC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.