Prupe.8G203900_v2.0.a1

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011563
Physical Location & Seq
Reverse (-)
19146858 .. 19147852
995 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G203900.1

Sequence Viewer

Length: 387 bp
ATGTCTCACCAGGGAAGATGCAGTGCAACTAAAACAGAAAAACCTGCCACTATTTTTCTCTTTCTCTTCCTCATCATTGTGTCTGCTCAAAAAACTACTACGTTCACAGTTGGTGGCAATTCCGGTTGGACTTTTAACGTTGAAAACTGGACAGATGGAAAGAAGTTCAAGGCGGGAGATATACTTGTTTTCAACTATGATCCATCCTCCCACGATGTGGCAGTTGTTGATGCCAATGAATTTACTAGTTGCAGCGCTTCTTCAAACTCTAAGACATTCAGCACCGGCAAAGATCGAGTCAAATTATCGAAGGGACTCAACTATTTCATCTGCACTGTTCCCGGCCACTGCAATGGGGGAGTGAAGATTTCAGTTAATGCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

129

Amino Acids

13.78

Weight (kDa)

8.96

Isoelectric Point (pI)

22.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 217
AciI CCGC 1 cut(s) 173
AclI AACGTT 1 cut(s) 138
AclWI GGATC 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 1 cut(s) 239
AdeI CACNNNGTG 1 cut(s) 217
AfeI AGCGCT 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 4 cut(s) 143, 169, 193, 264
AhlI ACTAGT 1 cut(s) 245
AjnI CCWGG 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 194
Aor51HI AGCGCT 1 cut(s) 256
AoxI GGCC 1 cut(s) 343
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 1 cut(s) 239
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
AspLEI GCGC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 342
BbvI GCAGC 1 cut(s) 264
BccI CCATC 2 cut(s) 149, 211
BciT130I CCWGG 1 cut(s) 11
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 9
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
Bme1390I CCNGG 2 cut(s) 11, 342
BmrFI CCNGG 2 cut(s) 11, 342
BmsI GCATC 2 cut(s) 8, 220
BpuMI CCSGG 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 203
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 358
BseNI ACTGG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 1 cut(s) 345
BsiSI CCGG 3 cut(s) 123, 285, 342
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 327
BsnI GGCC 1 cut(s) 345
Bsp143I GATC 2 cut(s) 199, 292
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 345
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 2 cut(s) 199, 292
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 109, 337
Bst6I CTCTTC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 203
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 2 cut(s) 202, 295
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 199, 292
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 2 cut(s) 9, 340
BstV1I GCAGC 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 353
BsuRI GGCC 1 cut(s) 345
BtsCI GGATG 1 cut(s) 203
BtsI GCAGTG 2 cut(s) 28, 346
BtsIMutI CAGTG 3 cut(s) 28, 333, 346
BveI ACCTGC 1 cut(s) 52
CfoI GCGC 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 284
CviJI RGCY 1 cut(s) 345
CviKI_1 RGCY 1 cut(s) 345
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 201, 294
DpnII GATC 2 cut(s) 199, 292
DraIII CACNNNGTG 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco47III AGCGCT 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 9
FaiI YATR 2 cut(s) 182, 198
FaqI GGGAC 1 cut(s) 327
FauI CCCGC 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 1 cut(s) 246
GlaI GCGC 1 cut(s) 256
GluI GCNGC 1 cut(s) 253
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 1 cut(s) 345
HapII CCGG 3 cut(s) 123, 285, 342
HhaI GCGC 1 cut(s) 257
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HinfI GANTC 2 cut(s) 297, 315
HpaII CCGG 3 cut(s) 123, 285, 342
Hpy166II GTNNAC 1 cut(s) 105
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 2 cut(s) 109, 337
HpyCH4IV ACGT 2 cut(s) 101, 138
HpyCH4V TGCA 5 cut(s) 21, 26, 252, 333, 351
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 2 cut(s) 101, 138
HspAI GCGC 1 cut(s) 255
Kzo9I GATC 2 cut(s) 199, 292
LpnPI CCDG 6 cut(s) 23, 57, 133, 136, 298, 355
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 2 cut(s) 8, 220
MaeI CTAG 1 cut(s) 246
MaeII ACGT 2 cut(s) 101, 138
MalI GATC 2 cut(s) 201, 294
MboI GATC 2 cut(s) 199, 292
MboII GAAGA 4 cut(s) 27, 58, 252, 376
MluCI AATT 3 cut(s) 118, 239, 302
MlyI GAGTC 2 cut(s) 306, 309
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 2 cut(s) 80, 217
MseI TTAA 2 cut(s) 135, 375
MslI CAYNNNNRTG 2 cut(s) 77, 351
MspI CCGG 3 cut(s) 123, 285, 342
MspR9I CCNGG 2 cut(s) 11, 342
MvaI CCWGG 1 cut(s) 11
NciI CCSGG 1 cut(s) 342
NdeII GATC 2 cut(s) 199, 292
PflMI CCANNNNNTGG 1 cut(s) 217
PkrI GCNGC 1 cut(s) 254
PleI GAGTC 2 cut(s) 305, 309
PpsI GAGTC 2 cut(s) 305, 309
Psp1406I AACGTT 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
RseI CAYNNNNRTG 2 cut(s) 77, 351
SaqAI TTAA 2 cut(s) 135, 375
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 2 cut(s) 199, 292
SchI GAGTC 2 cut(s) 306, 309
ScrFI CCNGG 2 cut(s) 11, 342
SetI ASST 3 cut(s) 46, 104, 141
SfaNI GCATC 2 cut(s) 8, 220
SmiMI CAYNNNNRTG 2 cut(s) 77, 351
SpeI ACTAGT 1 cut(s) 245
Sse9I AATT 3 cut(s) 118, 239, 302
SsiI CCGC 1 cut(s) 173
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 9, 340
TaaI ACNGT 2 cut(s) 109, 337
TaiI ACGT 2 cut(s) 104, 141
TaqI TCGA 2 cut(s) 295, 308
TasI AATT 3 cut(s) 118, 239, 302
Tru1I TTAA 2 cut(s) 135, 375
Tru9I TTAA 2 cut(s) 135, 375
TscAI CASTG 3 cut(s) 28, 340, 353
TseI GCWGC 1 cut(s) 252
TspDTI ATGAA 2 cut(s) 252, 316
TspRI CASTG 3 cut(s) 28, 340, 353
Van91I CCANNNNNTGG 1 cut(s) 217
XapI RAATTY 1 cut(s) 239
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.