Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005354.1

Orthogroup ID

OG0011563

Physical Location & Seq

Genomic Coordinates Reverse (-)

27360 .. 28196

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005354.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgtcttacaagaatactttgctcattggatttggcctgagttttgcctccttgttgttccaatgccaagaaatacatgggaaggaattcttggtcggagatgagaaaggctggagcccctatcccggcatatctgactggccaaatggcaagacgttcacacctggcgatatcttgattttcaagtacaacaatacaagtacttctgtacgacgatttgatgaaatcaaatacaaaggctactcggaggaatgttacgcaacttgtgacaatttcctttgtccctacaatgatttcaactcaggaaatgatcatcttgtattaaacaaaggaaagaactacttcatttctccagaccacgatcgttgcagccaaggatttaagatcaaagtttgtgctgagtttgatggccaaaggaataactgtgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

143

Amino Acids

16.3

Weight (kDa)

5.88

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19160
malus_domestica	MD05G1176800.v1.1 MD08G1027700.v1.1 MD15G1392700.v1.1
prunus_persica	Prupe.5G066600_v2.0.a1 Prupe.6G288900_v2.0.a1 Prupe.6G290200_v2.0.a1 Prupe.6G290300_v2.0.a1 Prupe.8G203900_v2.0.a1
pyrus_communis	pycom02g09230 pycom05g16300 pycom08g01930 pycom08g02190 pycom09g11740
rosa_multiflora	Rmu_sc0005354.1_g000004
rosa_roxburghii	Rroxscaffold_6G00397120
rosa_samantha	Rh7AG207700 Rh7CG220000 Rh7DG214800
rosa_wichuraiana	Rw7G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	140, 409
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	3 cut(s)	188, 202, 210
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	184, 298
AjnI	CCWGG	1 cut(s)	163
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AoxI	GGCC	3 cut(s)	34, 140, 409
ApeKI	GCWGC	1 cut(s)	369
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	2 cut(s)	86, 341
AsuC2I	CCSGG	1 cut(s)	126
BalI	TGGCCA	2 cut(s)	142, 411
BanII	GRGCYC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	381
BccI	CCATC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	165
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	370
BlsI	GCNGC	1 cut(s)	371
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	126, 165
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	126, 165
BpmI	CTGGAG	2 cut(s)	133, 336
BpuMI	CCSGG	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	3 cut(s)	29, 315, 390
BseNI	ACTGG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	3 cut(s)	36, 142, 411
BsiEI	CGRYCG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	3 cut(s)	36, 142, 411
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	310, 361, 384
BspANI	GGCC	3 cut(s)	36, 142, 411
BspCNI	CTCAG	3 cut(s)	30, 314, 391
BspLI	GGNNCC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	3 cut(s)	310, 361, 384
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	425
BstDEI	CTNAG	4 cut(s)	38, 301, 399, 429
BstKTI	GATC	3 cut(s)	313, 364, 387
BstMBI	GATC	3 cut(s)	310, 361, 384
BstMCI	CGRYCG	1 cut(s)	364
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	124, 163
BstV1I	GCAGC	1 cut(s)	381
BsuRI	GGCC	3 cut(s)	36, 142, 411
Csp6I	GTAC	3 cut(s)	187, 201, 209
CspCI	CAANNNNNGTGG	2 cut(s)	347, 382
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	7 cut(s)	36, 111, 117, 142, 240, 372, 411
CviKI_1	RGCY	7 cut(s)	36, 111, 117, 142, 240, 372, 411
CviQI	GTAC	3 cut(s)	187, 201, 209
DdeI	CTNAG	4 cut(s)	38, 301, 399, 429
DpnI	GATC	3 cut(s)	312, 363, 386
DpnII	GATC	3 cut(s)	310, 361, 384
EaeI	YGGCCR	2 cut(s)	140, 409
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	1 cut(s)	80
FaiI	YATR	2 cut(s)	78, 131
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 326, 358
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	370
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	370
GluI	GCNGC	1 cut(s)	370
GsuI	CTGGAG	2 cut(s)	133, 336
HaeIII	GGCC	3 cut(s)	36, 142, 411
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	1 cut(s)	80
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	3 cut(s)	98, 136, 247
Hpy188III	TCNNGA	3 cut(s)	175, 303, 353
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	216
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	1 cut(s)	369
HpyF3I	CTNAG	4 cut(s)	38, 301, 399, 429
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	310, 361, 384
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	8 cut(s)	50, 97, 124, 139, 150, 177, 288, 366
Lsp1109I	GCAGC	1 cut(s)	381
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	2 cut(s)	254, 266
MalI	GATC	3 cut(s)	312, 363, 386
MboI	GATC	3 cut(s)	310, 361, 384
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	2 cut(s)	142, 411
MluCI	AATT	2 cut(s)	86, 271
MluNI	TGGCCA	2 cut(s)	142, 411
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	2 cut(s)	58, 241
Mox20I	TGGCCA	2 cut(s)	142, 411
MroXI	GAANNNNTTC	2 cut(s)	86, 341
MscI	TGGCCA	2 cut(s)	142, 411
MseI	TTAA	2 cut(s)	323, 381
Msp20I	TGGCCA	2 cut(s)	142, 411
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	126, 165
MvaI	CCWGG	1 cut(s)	165
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	3 cut(s)	310, 361, 384
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	266
PdmI	GAANNNNTTC	2 cut(s)	86, 341
PkrI	GCNGC	1 cut(s)	371
Ple19I	CGATCG	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	116
PvuI	CGATCG	1 cut(s)	364
RsaI	GTAC	3 cut(s)	188, 202, 210
RsaNI	GTAC	3 cut(s)	187, 201, 209
SaqAI	TTAA	2 cut(s)	323, 381
SatI	GCNGC	1 cut(s)	370
Sau3AI	GATC	3 cut(s)	310, 361, 384
ScaI	AGTACT	1 cut(s)	202
ScrFI	CCNGG	2 cut(s)	126, 165
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	2 cut(s)	158, 166
Sse9I	AATT	2 cut(s)	86, 271
StyD4I	CCNGG	2 cut(s)	124, 163
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	1 cut(s)	158
TasI	AATT	2 cut(s)	86, 271
TatI	WGTACW	2 cut(s)	186, 200
Tru1I	TTAA	2 cut(s)	323, 381
Tru9I	TTAA	2 cut(s)	323, 381
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	1 cut(s)	369
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	237, 334
XapI	RAATTY	1 cut(s)	86
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XmnI	GAANNNNTTC	2 cut(s)	86, 341
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.