Rh7AG207700

Early nodulin-like protein 22

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011563
Physical Location & Seq
Forward (+)
18973134 .. 18974370
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG207700.1

Sequence Viewer

Length: 432 bp
ATGTCTTGCAAGAATACTTTGCTCATTGGATTTGGCCTGAGTTTTGCCTCCTTGTTGTTCCAATGCCAAGAAATACATGGGAAGGAATTCTTGGTCGGAGATGACAAAGGCTGGAGCCCCTATCCCGGCATATCTGACTGGCCAAATGGCAAGACGTTCACACCCGGCGATATCTTGATTTTCAAGTACAACAATACAAGTACTTCTGTACGACGATTTGATGAAATCAAATACAAAGGCTACTCGGAGGAATGTTACGCAACTTGTGACAATTTCCTTTGTCCCTACAATGATTTCAACTCAGGAAATGATCATCTTGTATTAAACAAAGGAAAGAACTACTTCATTTCTCCAGACCACGATCGTTGCAGCCAAGGATTTAAGATCAAAGTTTGTGCTGAGTTTGATGGCCAAAGGAATAACTGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

143

Amino Acids

16.23

Weight (kDa)

5.87

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 45 - 126 1.6e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 140, 409
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 3 cut(s) 188, 202, 210
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 2 cut(s) 184, 298
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AoxI GGCC 3 cut(s) 34, 140, 409
ApeKI GCWGC 1 cut(s) 369
ApoI RAATTY 1 cut(s) 86
Asp700I GAANNNNTTC 2 cut(s) 86, 341
AsuC2I CCSGG 2 cut(s) 126, 165
BalI TGGCCA 2 cut(s) 142, 411
BanII GRGCYC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 381
BccI CCATC 1 cut(s) 401
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 2 cut(s) 126, 165
BisI GCNGC 1 cut(s) 370
BlsI GCNGC 1 cut(s) 371
BmcAI AGTACT 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 126, 165
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 2 cut(s) 126, 165
BpmI CTGGAG 2 cut(s) 133, 336
BpuMI CCSGG 2 cut(s) 126, 165
BsaJI CCNNGG 1 cut(s) 373
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 3 cut(s) 29, 315, 390
BseNI ACTGG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 3 cut(s) 36, 142, 411
BsiEI CGRYCG 1 cut(s) 364
BsiSI CCGG 2 cut(s) 126, 165
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 3 cut(s) 36, 142, 411
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 3 cut(s) 310, 361, 384
BspANI GGCC 3 cut(s) 36, 142, 411
BspCNI CTCAG 3 cut(s) 30, 314, 391
BspLI GGNNCC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 3 cut(s) 310, 361, 384
BssT1I CCWWGG 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 425
BstDEI CTNAG 4 cut(s) 38, 301, 399, 429
BstKTI GATC 3 cut(s) 313, 364, 387
BstMBI GATC 3 cut(s) 310, 361, 384
BstMCI CGRYCG 1 cut(s) 364
BstSCI CCNGG 2 cut(s) 124, 163
BstV1I GCAGC 1 cut(s) 381
BsuRI GGCC 3 cut(s) 36, 142, 411
Csp6I GTAC 3 cut(s) 187, 201, 209
CspCI CAANNNNNGTGG 2 cut(s) 347, 382
CviAII CATG 1 cut(s) 77
CviJI RGCY 7 cut(s) 36, 111, 117, 142, 240, 372, 411
CviKI_1 RGCY 7 cut(s) 36, 111, 117, 142, 240, 372, 411
CviQI GTAC 3 cut(s) 187, 201, 209
DdeI CTNAG 4 cut(s) 38, 301, 399, 429
DpnI GATC 3 cut(s) 312, 363, 386
DpnII GATC 3 cut(s) 310, 361, 384
EaeI YGGCCR 2 cut(s) 140, 409
Eco130I CCWWGG 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 119
Eco32I GATATC 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 86
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 1 cut(s) 80
FaiI YATR 2 cut(s) 78, 131
FalI AAGNNNNNCTT 4 cut(s) 74, 106, 326, 358
FaqI GGGAC 1 cut(s) 267
FatI CATG 1 cut(s) 76
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 370
GluI GCNGC 1 cut(s) 370
GsuI CTGGAG 2 cut(s) 133, 336
HaeIII GGCC 3 cut(s) 36, 142, 411
HapII CCGG 2 cut(s) 126, 165
Hin1II CATG 1 cut(s) 80
HpaII CCGG 2 cut(s) 126, 165
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 3 cut(s) 98, 136, 247
Hpy188III TCNNGA 3 cut(s) 175, 303, 353
Hpy8I GTNNAC 1 cut(s) 159
Hpy99I CGWCG 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 9, 369
HpyF3I CTNAG 4 cut(s) 38, 301, 399, 429
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 3 cut(s) 310, 361, 384
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 7 cut(s) 50, 97, 124, 139, 178, 288, 366
Lsp1109I GCAGC 1 cut(s) 381
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 254, 266
MalI GATC 3 cut(s) 312, 363, 386
MboI GATC 3 cut(s) 310, 361, 384
MhlI GDGCHC 1 cut(s) 119
MlsI TGGCCA 2 cut(s) 142, 411
MluCI AATT 2 cut(s) 86, 271
MluNI TGGCCA 2 cut(s) 142, 411
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 2 cut(s) 58, 241
Mox20I TGGCCA 2 cut(s) 142, 411
MroXI GAANNNNTTC 2 cut(s) 86, 341
MscI TGGCCA 2 cut(s) 142, 411
MseI TTAA 2 cut(s) 323, 381
Msp20I TGGCCA 2 cut(s) 142, 411
MspI CCGG 2 cut(s) 126, 165
MspR9I CCNGG 2 cut(s) 126, 165
NciI CCSGG 2 cut(s) 126, 165
NdeII GATC 3 cut(s) 310, 361, 384
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 266
PdmI GAANNNNTTC 2 cut(s) 86, 341
PkrI GCNGC 1 cut(s) 371
Ple19I CGATCG 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 116
PvuI CGATCG 1 cut(s) 364
RsaI GTAC 3 cut(s) 188, 202, 210
RsaNI GTAC 3 cut(s) 187, 201, 209
SaqAI TTAA 2 cut(s) 323, 381
SatI GCNGC 1 cut(s) 370
Sau3AI GATC 3 cut(s) 310, 361, 384
ScaI AGTACT 1 cut(s) 202
ScrFI CCNGG 2 cut(s) 126, 165
SduI GDGCHC 1 cut(s) 119
SetI ASST 1 cut(s) 158
Sse9I AATT 2 cut(s) 86, 271
StyD4I CCNGG 2 cut(s) 124, 163
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 425
TaiI ACGT 1 cut(s) 158
TasI AATT 2 cut(s) 86, 271
TatI WGTACW 2 cut(s) 186, 200
Tru1I TTAA 2 cut(s) 323, 381
Tru9I TTAA 2 cut(s) 323, 381
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 369
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 2 cut(s) 237, 334
XapI RAATTY 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XmnI GAANNNNTTC 2 cut(s) 86, 341
ZrmI AGTACT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.