Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011563

Physical Location & Seq

Genomic Coordinates Reverse (-)

19622732 .. 19623201

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTCTCACCAGGGAAGATGCAGTGTAACTCAAGCCAATGTTCATCTCCTCTTTCTCTTCCTCACCATTGTGTCTGCTCAAAAAACCACCTTCACAGTTGGTGACAAATCTGGGTGGACTTTCAACGTCGAAAACTGGACAGATGGAAAGAAGTTCAAAGCCGGCGATGAACTTGTTTTCAACTATGATCCATCCCTCCACAATGTGGCAGTTGTTGATGCCAATGAATATAGTAGTTGTAGTGCTTCTTCAAGCTCTAGGACATTCACCACTGGCAAAGATCCCGTCAAATTATCGAAGGGACTCAACTACTTTATCTGCACCGTCCCTGGCCACTGCGATGCTGGTGTGAAGATTTCGGTTAATGCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

125

Amino Acids

13.43

Weight (kDa)

7.69

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19160
malus_domestica	MD05G1176800.v1.1 MD08G1027700.v1.1 MD15G1392700.v1.1
prunus_persica	Prupe.5G066600_v2.0.a1 Prupe.6G288900_v2.0.a1 Prupe.6G290200_v2.0.a1 Prupe.6G290300_v2.0.a1 Prupe.8G203900_v2.0.a1
pyrus_communis	pycom02g09230 pycom05g16300 pycom08g01930 pycom08g02190 pycom09g11740
rosa_multiflora	Rmu_sc0005354.1_g000004
rosa_roxburghii	Rroxscaffold_6G00397120
rosa_samantha	Rh7AG207700 Rh7CG220000 Rh7DG214800
rosa_wichuraiana	Rw7G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	205
AclWI	GGATC	2 cut(s)	182, 275
AcoI	YGGCCR	1 cut(s)	331
AdeI	CACNNNGTG	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	4 cut(s)	124, 157, 181, 252
AjnI	CCWGG	2 cut(s)	9, 328
AleI	CACNNNNGTG	1 cut(s)	68
AluBI	AGCT	1 cut(s)	255
AluI	AGCT	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	182, 275
AoxI	GGCC	1 cut(s)	331
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AsuHPI	GGTGA	3 cut(s)	55, 113, 259
BalI	TGGCCA	1 cut(s)	333
BarI	GAAGNNNNNNTAC	2 cut(s)	232, 264
BccI	CCATC	2 cut(s)	137, 199
BciT130I	CCWGG	2 cut(s)	11, 330
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	258
Bme1390I	CCNGG	2 cut(s)	11, 330
BmrFI	CCNGG	2 cut(s)	11, 330
BmsI	GCATC	3 cut(s)	8, 208, 331
BpuEI	CTTGAG	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	10, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	140, 277
BseBI	CCWGG	2 cut(s)	11, 330
BseDI	CCNNGG	2 cut(s)	10, 328
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseNI	ACTGG	2 cut(s)	140, 277
BseRI	GAGGAG	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	311, 315
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	311, 315
BsnI	GGCC	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	187, 280
BspANI	GGCC	1 cut(s)	333
BspPI	GGATC	2 cut(s)	182, 275
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	140, 277
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	10, 328
BssMI	GATC	2 cut(s)	187, 280
Bst2UI	CCWGG	2 cut(s)	11, 330
Bst4CI	ACNGT	2 cut(s)	97, 325
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	191
BstKTI	GATC	2 cut(s)	190, 283
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	187, 280
BstNI	CCWGG	2 cut(s)	11, 330
BstSCI	CCNGG	2 cut(s)	9, 328
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	333
BtgZI	GCGATG	2 cut(s)	180, 354
BtsCI	GGATG	1 cut(s)	191
BtsI	GCAGTG	2 cut(s)	28, 334
BtsIMutI	CAGTG	3 cut(s)	28, 270, 334
Cac8I	GCNNGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	161
CviJI	RGCY	4 cut(s)	35, 161, 255, 333
CviKI_1	RGCY	4 cut(s)	35, 161, 255, 333
DpnI	GATC	2 cut(s)	189, 282
DpnII	GATC	2 cut(s)	187, 280
DraIII	CACNNNGTG	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EcoRII	CCWGG	2 cut(s)	9, 328
FaiI	YATR	2 cut(s)	186, 231
FaqI	GGGAC	2 cut(s)	311, 315
FokI	GGATG	1 cut(s)	178
FspBI	CTAG	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	1 cut(s)	162
HinfI	GANTC	1 cut(s)	303
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	3 cut(s)	55, 113, 259
Hpy166II	GTNNAC	1 cut(s)	117
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	100, 292
HpyCH4III	ACNGT	2 cut(s)	97, 325
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	21, 321
HpySE526I	ACGT	1 cut(s)	126
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	187, 280
LpnPI	CCDG	8 cut(s)	23, 96, 121, 175, 258, 315, 330, 342
LweI	GCATC	3 cut(s)	8, 208, 331
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	2 cut(s)	25, 101
MalI	GATC	2 cut(s)	189, 282
MboI	GATC	2 cut(s)	187, 280
MboII	GAAGA	4 cut(s)	27, 49, 240, 364
MflI	RGATCY	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	1 cut(s)	290
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	297
MnlI	CCTC	3 cut(s)	59, 71, 206
Mox20I	TGGCCA	1 cut(s)	333
MroNI	GCCGGC	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	2 cut(s)	68, 339
Msp20I	TGGCCA	1 cut(s)	333
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	11, 330
MvaI	CCWGG	2 cut(s)	11, 330
NaeI	GCCGGC	1 cut(s)	163
NdeII	GATC	2 cut(s)	187, 280
NgoMIV	GCCGGC	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	101
OliI	CACNNNNGTG	1 cut(s)	68
PdiI	GCCGGC	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	205
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	9, 328
PspGI	CCWGG	2 cut(s)	9, 328
PsuI	RGATCY	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	68, 339
SaqAI	TTAA	1 cut(s)	363
Sau3AI	GATC	2 cut(s)	187, 280
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	2 cut(s)	11, 330
SetI	ASST	3 cut(s)	92, 129, 257
SfaNI	GCATC	3 cut(s)	8, 208, 331
SmiMI	CAYNNNNRTG	2 cut(s)	68, 339
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	1 cut(s)	290
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	9, 328
TaaI	ACNGT	2 cut(s)	97, 325
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	2 cut(s)	129, 296
TasI	AATT	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	3 cut(s)	28, 277, 341
TseFI	GTSAC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	3 cut(s)	32, 183, 240
TspRI	CASTG	3 cut(s)	28, 277, 341
Van91I	CCANNNNNTGG	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.