Prupe.6G290300_v2.0.a1

Basic blue

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
26797123 .. 26797838
716 bp
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UTR
Exon/CDS
Intron
Prupe.6G290300.1

Sequence Viewer

Length: 387 bp
ATGTCTATTGGAATGAGCAAACTTGTGGTCATTGGAATTAGTCTTTTTGTATGCTTGCTGTTACAATGTGAAGAAATCTATGGAAAAGAATATTTAGTGGGGGATGAGAAAAGATGGAATCCAGATACTAATTTATCTAGTTGGCCTGAAGGCAAAAAGTTCAAGGCTGGAGATGTATTGAATTTTCAGTACACCAGTCACTTATTCGACGTAGTTGCTCTTGGCAATTATCCAGGGTACGAGGCATGTGACCCTTATCCTGTTCCAAAGAAAATATATTCTTCTGGAAACGATTATGTGGTATTAGAGAAAGGCACAAACTCCTTCGTACCTTTTGATGTATCTTATTGCAAGCGTGGAATGAAACTTCAAGTTGAGGCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

14.42

Weight (kDa)

5.18

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 3 cut(s) 191, 239, 330
AgsI TTSAA 3 cut(s) 163, 181, 371
AjnI CCWGG 1 cut(s) 232
AoxI GGCC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 181
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
BccI CCATC 1 cut(s) 108
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 1 cut(s) 234
BfaI CTAG 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 233
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 195
BshFI GGCC 1 cut(s) 145
BsnI GGCC 1 cut(s) 145
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 373
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 56, 353
BstDEI CTNAG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 109
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 232
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 56, 353
Csp6I GTAC 3 cut(s) 190, 238, 329
CviAII CATG 1 cut(s) 246
CviJI RGCY 3 cut(s) 145, 167, 380
CviKI_1 RGCY 3 cut(s) 145, 167, 380
CviQI GTAC 3 cut(s) 190, 238, 329
DdeI CTNAG 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 249
FaiI YATR 5 cut(s) 52, 81, 247, 277, 297
FatI CATG 1 cut(s) 245
FokI GGATG 1 cut(s) 116
FspBI CTAG 1 cut(s) 138
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 145
Hin1II CATG 1 cut(s) 249
HinfI GANTC 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 192
Hpy188III TCNNGA 2 cut(s) 122, 285
Hpy8I GTNNAC 1 cut(s) 192
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 2 cut(s) 143, 334
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 351
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 1 cut(s) 249
LpnPI CCDG 8 cut(s) 135, 153, 159, 208, 219, 246, 270, 273
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 3 cut(s) 60, 197, 248
MboII GAAGA 2 cut(s) 83, 273
MluCI AATT 4 cut(s) 36, 130, 181, 226
MnlI CCTC 2 cut(s) 235, 370
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
NlaIII CATG 1 cut(s) 249
NmuCI GTSAC 2 cut(s) 197, 248
NspI RCATGY 1 cut(s) 249
PfeI GAWTC 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
RsaI GTAC 3 cut(s) 191, 239, 330
RsaNI GTAC 3 cut(s) 190, 238, 329
ScrFI CCNGG 1 cut(s) 234
SetI ASST 2 cut(s) 213, 334
Sse9I AATT 4 cut(s) 36, 130, 181, 226
SspI AATATT 1 cut(s) 92
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 232
TaiI ACGT 1 cut(s) 213
TaqI TCGA 1 cut(s) 207
TasI AATT 4 cut(s) 36, 130, 181, 226
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 1 cut(s) 118
TseFI GTSAC 2 cut(s) 197, 248
Tsp45I GTSAC 2 cut(s) 197, 248
TspDTI ATGAA 1 cut(s) 377
XapI RAATTY 1 cut(s) 181
XceI RCATGY 1 cut(s) 249
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.