Rroxscaffold_6G00397120

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
18778995 .. 18784850
5856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397120.1

Sequence Viewer

Length: 234 bp
ATGTCTTGTAAGAATACTTTGCTCATTGGATTTGGCCTCAGCCTTGCCTCCTTGTTGTTCCAATGCCAAGAAATACATGGGAAGGAATTCTTGGTCGGTGATGACAAAGGTAGAGCCCCCATCCCGGCATATCCGACTGGCCAAATGGCAAGACGTTCACACCCAAATAAACTGATCTATAGCAGACCGCAAACCGGACTGTCTTGCCTTCTTTTTGAATCAAAAGTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.49

Weight (kDa)

9.26

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 124, 194
AgsI TTSAA 1 cut(s) 218
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AoxI GGCC 2 cut(s) 34, 139
ApoI RAATTY 1 cut(s) 86
Asp700I GAANNNNTTC 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 110
BalI TGGCCA 1 cut(s) 141
BanII GRGCYC 1 cut(s) 118
BbvCI CCTCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 125
Bpu10I CCTNAGC 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 194
Bse1I ACTGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 124, 194
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 142
BshFI GGCC 2 cut(s) 36, 141
BsiSI CCGG 2 cut(s) 125, 195
BslI CCNNNNNNNGG 2 cut(s) 124, 194
BsnI GGCC 2 cut(s) 36, 141
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 188
BspANI GGCC 2 cut(s) 36, 141
BspCNI CTCAG 1 cut(s) 51
BsrI ACTGG 1 cut(s) 142
BssMI GATC 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 178
BsuRI GGCC 2 cut(s) 36, 141
BtsCI GGATG 1 cut(s) 120
CviAII CATG 1 cut(s) 77
CviJI RGCY 4 cut(s) 36, 42, 116, 141
CviKI_1 RGCY 4 cut(s) 36, 42, 116, 141
DdeI CTNAG 1 cut(s) 38
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 118
FaeI CATG 1 cut(s) 80
FaiI YATR 3 cut(s) 78, 130, 180
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 1 cut(s) 76
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 118
HaeIII GGCC 2 cut(s) 36, 141
HapII CCGG 2 cut(s) 125, 195
Hin1II CATG 1 cut(s) 80
HinfI GANTC 1 cut(s) 218
HpaII CCGG 2 cut(s) 125, 195
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 135
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 76, 218
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4IV ACGT 1 cut(s) 154
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 1 cut(s) 80
Kzo9I GATC 1 cut(s) 174
LpnPI CCDG 3 cut(s) 123, 138, 208
MaeII ACGT 1 cut(s) 154
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 1 cut(s) 86
MluNI TGGCCA 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 2 cut(s) 47, 58
Mox20I TGGCCA 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 86
MscI TGGCCA 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 141
MspI CCGG 2 cut(s) 125, 195
MspR9I CCNGG 1 cut(s) 125
NciI CCSGG 1 cut(s) 125
NdeII GATC 1 cut(s) 174
NlaIII CATG 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 218
Sau3AI GATC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 118
SetI ASST 2 cut(s) 112, 157
SfcI CTRYAG 1 cut(s) 178
Sse9I AATT 1 cut(s) 86
SsiI CCGC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 201
TaiI ACGT 1 cut(s) 157
TasI AATT 1 cut(s) 86
TfiI GAWTC 1 cut(s) 218
XapI RAATTY 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.