MD08G1027700.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0011563
Physical Location & Seq
Reverse (-)
2022532 .. 2022945
414 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1027700.v1.1.491

Sequence Viewer

Length: 180 bp
ATGGTAGCTGCTGTACGGGACAAATATTTGTTCGAGAAGTGTGACTTATATGCCGGCGTGATAAAACTATACACTTCAGGAAACGATCATGCGGTACTGGAGAAGGGCACAATCTACTTCGCACCTTATCCGTCTCCCTACTGTGAAAATGGAATGAAACTTACAGTTCATGTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

60

Amino Acids

6.66

Weight (kDa)

6.04

Isoelectric Point (pI)

19.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 2 cut(s) 15, 96
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 8
BaeGI GKGCMC 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 138
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
BpmI CTGGAG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 53
BssMI GATC 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 143, 166
BstC8I GCNNGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 53
Csp6I GTAC 2 cut(s) 14, 95
CviAII CATG 2 cut(s) 89, 170
CviJI RGCY 1 cut(s) 8
CviKI_1 RGCY 1 cut(s) 8
CviQI GTAC 2 cut(s) 14, 95
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 92, 173
FaiI YATR 5 cut(s) 49, 51, 70, 90, 171
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FaqI GGGAC 1 cut(s) 32
FatI CATG 2 cut(s) 88, 169
Fnu4HI GCNGC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 119
HapII CCGG 1 cut(s) 54
Hin1II CATG 2 cut(s) 92, 173
HpaII CCGG 1 cut(s) 54
Hpy188III TCNNGA 2 cut(s) 34, 78
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 2 cut(s) 143, 166
Hsp92II CATG 2 cut(s) 92, 173
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 63, 67, 83
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 110
MroNI GCCGGC 1 cut(s) 53
MspI CCGG 1 cut(s) 54
NaeI GCCGGC 1 cut(s) 55
NdeII GATC 1 cut(s) 85
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 2 cut(s) 92, 173
NmuCI GTSAC 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 55
PkrI GCNGC 1 cut(s) 10
RsaI GTAC 2 cut(s) 15, 96
RsaNI GTAC 2 cut(s) 14, 95
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 1 cut(s) 85
SduI GDGCHC 1 cut(s) 110
SetI ASST 2 cut(s) 10, 127
SgeI CNNG 7 cut(s) 29, 46, 66, 70, 90, 101, 110
SsiI CCGC 1 cut(s) 92
SspI AATATT 1 cut(s) 26
TaaI ACNGT 2 cut(s) 143, 166
TaqI TCGA 1 cut(s) 33
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 158, 170
TspGWI ACGGA 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.