Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011563

Physical Location & Seq

Genomic Coordinates Reverse (-)

8111671 .. 8112810

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G066600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCTGGGACAAGAGTTAAAGCACAGAGCAGAGCTTTGGTCATCATATTTGGCCTTCTCTGCTTGCTTTTGCAAAGTGAAGAATCCCACCATGGAACTGAATATGTAGTGGGAGATGACAAGGGCTGGGACCTGTATCCGGAGGTATCCAATTGGGGGAAAGACAAGCACTTCAAGGCTGGAGATGTCTTGGTTTTCAAATATAGCAACCCATTATTTAGCGTGGCGGCTGTGGATGCAAAAGGGTACCAAAGTTGTAGTGCAAAAGGCCATCTTAAGAAGTTATACAACTCTGGGGACGATCATGTCGTGTTAAAGAAGGGTCAAAACTACTTTATTTGTAATGTTATAGATTACTGTGGATATGGAATGAGAATTGCTGTTCATGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009856 GO:0009908 GO:0016020 GO:0022414 GO:0031012 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044421 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046658 GO:0048046 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051704 GO:0061458 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

132

Amino Acids

14.56

Weight (kDa)

7.69

Isoelectric Point (pI)

23.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19160
malus_domestica	MD05G1176800.v1.1 MD08G1027700.v1.1 MD15G1392700.v1.1
prunus_persica	Prupe.5G066600_v2.0.a1 Prupe.6G288900_v2.0.a1 Prupe.6G290200_v2.0.a1 Prupe.6G290300_v2.0.a1 Prupe.8G203900_v2.0.a1
pyrus_communis	pycom02g09230 pycom05g16300 pycom08g01930 pycom08g02190 pycom09g11740
rosa_multiflora	Rmu_sc0005354.1_g000004
rosa_roxburghii	Rroxscaffold_6G00397120
rosa_samantha	Rh7AG207700 Rh7CG220000 Rh7DG214800
rosa_wichuraiana	Rw7G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
Acc65I	GGTACC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	246
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	139, 156
AflII	CTTAAG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	175, 199
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	2 cut(s)	52, 268
Asp718I	GGTACC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	130
BaeI	ACNNNNGTAYC	2 cut(s)	238, 271
BanI	GGYRCC	1 cut(s)	246
BccI	CCATC	1 cut(s)	279
BciVI	GTATCC	2 cut(s)	147, 157
BfrI	CTTAAG	1 cut(s)	275
BfuI	GTATCC	2 cut(s)	147, 157
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	131, 248
BmsI	GCATC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 156
BseAI	TCCGGA	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	139, 156
BseYI	CCCAGC	1 cut(s)	126
BshFI	GGCC	2 cut(s)	54, 270
BshNI	GGYRCC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	3 cut(s)	22, 143, 311
BslI	CCNNNNNNNGG	2 cut(s)	139, 156
BsmFI	GGGAC	3 cut(s)	22, 143, 311
BsnI	GGCC	2 cut(s)	54, 270
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	301
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	2 cut(s)	54, 270
BspEI	TCCGGA	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	131, 248
BspT107I	GGYRCC	1 cut(s)	246
BspTI	CTTAAG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	359
BstAFI	CTTAAG	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	65
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 236, 386
BsuI	GTATCC	2 cut(s)	147, 157
BsuRI	GGCC	2 cut(s)	54, 270
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	3 cut(s)	92, 305, 386
CviJI	RGCY	6 cut(s)	35, 54, 126, 179, 230, 270
CviKI_1	RGCY	6 cut(s)	35, 54, 126, 179, 230, 270
CviQI	GTAC	1 cut(s)	247
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	3 cut(s)	95, 308, 389
FaiI	YATR	9 cut(s)	47, 93, 105, 204, 286, 306, 350, 366, 387
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FaqI	GGGAC	3 cut(s)	22, 143, 311
FatI	CATG	3 cut(s)	91, 304, 385
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	228
GsaI	CCCAGC	1 cut(s)	130
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	54, 270
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	3 cut(s)	95, 308, 389
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	140
Hpy188III	TCNNGA	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	65, 313
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	4 cut(s)	73, 239, 263, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 236, 386
Hsp92II	CATG	3 cut(s)	95, 308, 389
Kpn2I	TCCGGA	1 cut(s)	139
KpnI	GGTACC	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	301
LpnPI	CCDG	5 cut(s)	112, 146, 153, 165, 279
LweI	GCATC	1 cut(s)	226
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	1 cut(s)	92
MfeI	CAATTG	1 cut(s)	151
MluCI	AATT	2 cut(s)	151, 375
MnlI	CCTC	1 cut(s)	136
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	3 cut(s)	18, 276, 314
MspCI	CTTAAG	1 cut(s)	275
MspI	CCGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	151
MwoI	GCNNNNNNNGC	3 cut(s)	60, 236, 386
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	95, 308, 389
NlaIV	GGNNCC	2 cut(s)	131, 248
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	131, 248
PspPI	GGNCC	1 cut(s)	130
PspPPI	RGGWCCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	3 cut(s)	18, 276, 314
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	130
SetI	ASST	3 cut(s)	37, 135, 147
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	151, 375
SsiI	CCGC	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	359
TasI	AATT	2 cut(s)	151, 375
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	3 cut(s)	18, 276, 314
Tru9I	TTAA	3 cut(s)	18, 276, 314
TspDTI	ATGAA	1 cut(s)	374
Vha464I	CTTAAG	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.