MD05G1339500.v1.1

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014820
Physical Location & Seq
Reverse (-)
46035612 .. 46042307
6696 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1339500.v1.1.491

Sequence Viewer

Length: 792 bp
ATGACATTCATCGCTAAGGACAATAATTTTTTCAAGAGCTATTCAGACTGTCTGTATAGTGATGCGTCTTTGCTTGAAAACGAGAAACAAAAGATGAAGCTTCCGTTGCCGAAGATCTTTGGCAAAGTCCAAGAGAACCTCAAATTTGACCATCCAAAATTAATTTCAATTCTATTTAGACTGTATAGTGACACGTCTTTGCTTGAAAACGAGAAACAAAAGATGAAGCTTCCGTTGCCGAATATCTTTAGCAAAGTCCAAGAGAACCTCAAATTTGACCCTCCAAAATTAATTTCAAGGGATACATCTTCTTGTTTAAGAGACGACGAATTCGGGCGTCAAGCAGTTGCAGGCATAAACCCTCTGAGCATAGAAAGGCTTACAGTTTTCCCACCAGTAAGCAAACTTGATCCATCCATGGCTCACAAGAGTATATTGAAAAAAAGCAAGTTGTTCATACTAGACTATCATGACATGTTTCTTCCATTTCTCAACCAAATAAACAATTTAGATGACCGAAAAGCTTATGGAACTCGTGCGATTTTCTTCTTGACCTCATTGGGAACTTTAAAGCCAATTGCTATTGAGCTGAGCTTGCCTCCGACAAAGTCAGGTTCAGCATCCAAGCAGGTTCTCACACCTCCAGTTGATGCTACGACAAATTGGCTTTGGCAACTTGGCAAAGCCCATGTCTGCTCCAATGATGTCGGTGCTCATCAACTAATTCATCATTGGTTATGCGTTCATGCATGCATGGAACCACTTATAATAGCAGCTCATCGCCATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

264

Amino Acids

29.93

Weight (kDa)

9.09

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipoxygenase PF00305 36 - 262 4.3e-70 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 767
Acc36I ACCTGC 1 cut(s) 619
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 3 cut(s) 143, 272, 329
AcyI GRCGYC 1 cut(s) 337
AflIII ACRYGT 2 cut(s) 192, 474
AgsI TTSAA 6 cut(s) 34, 77, 168, 206, 297, 439
AjiI CACGTC 1 cut(s) 195
AjuI GAANNNNNNNTTGG 4 cut(s) 148, 180, 277, 309
AluBI AGCT 7 cut(s) 39, 100, 229, 524, 589, 594, 776
AluI AGCT 7 cut(s) 39, 100, 229, 524, 589, 594, 776
Alw21I GWGCWC 1 cut(s) 715
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 1 cut(s) 404
ApeKI GCWGC 1 cut(s) 773
ApoI RAATTY 3 cut(s) 143, 272, 329
ArsI GACNNNNNNTTYG 4 cut(s) 314, 346, 675, 707
AseI ATTAAT 2 cut(s) 161, 290
BauI CACGAG 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 715
BbvI GCAGC 1 cut(s) 785
BccI CCATC 2 cut(s) 159, 421
BciVI GTATCC 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 1 cut(s) 461
BfuAI ACCTGC 1 cut(s) 619
BfuI GTATCC 1 cut(s) 295
BglII AGATCT 1 cut(s) 114
BisI GCNGC 1 cut(s) 774
BlpI GCTNAGC 1 cut(s) 590
BlsI GCNGC 1 cut(s) 775
BmgBI CACGTC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 759
BmsI GCATC 3 cut(s) 52, 629, 640
BplI GAGNNNNNCTC 2 cut(s) 583, 615
BpmI CTGGAG 1 cut(s) 627
Bpu10I CCTNAGC 1 cut(s) 15
Bpu1102I GCTNAGC 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 417
Bse1I ACTGG 2 cut(s) 395, 644
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 3 cut(s) 151, 413, 620
BseMII CTCAG 2 cut(s) 356, 581
BseNI ACTGG 2 cut(s) 395, 644
BseXI GCAGC 1 cut(s) 785
BsiHKAI GWGCWC 1 cut(s) 715
BsmAI GTCTC 1 cut(s) 315
BsmBI CGTCTC 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 715
Bsp143I GATC 2 cut(s) 114, 409
Bsp1720I GCTNAGC 1 cut(s) 590
Bsp19I CCATGG 1 cut(s) 417
BspCNI CTCAG 2 cut(s) 357, 582
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 759
BspMI ACCTGC 1 cut(s) 619
BspPI GGATC 1 cut(s) 404
BsrI ACTGG 2 cut(s) 395, 644
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 2 cut(s) 114, 409
BssNI GRCGYC 1 cut(s) 337
BssSI CACGAG 1 cut(s) 534
BssT1I CCWWGG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 534
Bst4CI ACNGT 3 cut(s) 50, 183, 385
BstACI GRCGYC 1 cut(s) 337
BstC8I GCNNGC 3 cut(s) 352, 596, 751
BstDEI CTNAG 3 cut(s) 15, 365, 590
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 3 cut(s) 151, 413, 620
BstKTI GATC 2 cut(s) 117, 412
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 2 cut(s) 114, 409
BstMWI GCNNNNNNNGC 3 cut(s) 106, 235, 595
BstNSI RCATGY 2 cut(s) 478, 753
BstV1I GCAGC 1 cut(s) 785
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
BsuI GTATCC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 417
BtgZI GCGATG 1 cut(s) 764
BtrI CACGTC 1 cut(s) 195
BtsCI GGATG 3 cut(s) 151, 413, 620
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 3 cut(s) 352, 596, 751
CciI TCATGA 1 cut(s) 469
CseI GACGC 2 cut(s) 54, 326
CviAII CATG 7 cut(s) 418, 470, 475, 689, 746, 750, 754
DdeI CTNAG 3 cut(s) 15, 365, 590
DpnI GATC 2 cut(s) 116, 411
DpnII GATC 2 cut(s) 114, 409
DraI TTTAAA 1 cut(s) 570
Eco130I CCWWGG 1 cut(s) 417
EcoRI GAATTC 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 2 cut(s) 751, 755
ErhI CCWWGG 1 cut(s) 417
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 7 cut(s) 421, 473, 478, 692, 749, 753, 757
FatI CATG 7 cut(s) 417, 469, 474, 688, 745, 749, 753
Fnu4HI GCNGC 1 cut(s) 774
FokI GGATG 3 cut(s) 138, 400, 607
Fsp4HI GCNGC 1 cut(s) 774
FspBI CTAG 1 cut(s) 461
GluI GCNGC 1 cut(s) 774
GsuI CTGGAG 1 cut(s) 627
HgaI GACGC 2 cut(s) 54, 326
Hin1I GRCGYC 1 cut(s) 337
Hin1II CATG 7 cut(s) 421, 473, 478, 692, 749, 753, 757
HindIII AAGCTT 3 cut(s) 98, 227, 522
Hpy188I TCNGA 3 cut(s) 46, 366, 603
Hpy188III TCNNGA 3 cut(s) 34, 470, 550
Hpy99I CGWCG 1 cut(s) 329
HpyCH4III ACNGT 3 cut(s) 50, 183, 385
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 350, 749, 753
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 235, 595
HpyF3I CTNAG 3 cut(s) 15, 365, 590
HpySE526I ACGT 1 cut(s) 194
Hsp92I GRCGYC 1 cut(s) 337
Hsp92II CATG 7 cut(s) 421, 473, 478, 692, 749, 753, 757
Kzo9I GATC 2 cut(s) 114, 409
LmnI GCTCC 1 cut(s) 701
LpnPI CCDG 5 cut(s) 336, 408, 597, 614, 657
Lsp1109I GCAGC 1 cut(s) 785
LweI GCATC 3 cut(s) 52, 629, 640
MaeI CTAG 1 cut(s) 461
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 116, 411
MboI GATC 2 cut(s) 114, 409
MboII GAAGA 4 cut(s) 124, 300, 473, 538
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 715
MmeI TCCRAC 1 cut(s) 626
MnlI CCTC 7 cut(s) 149, 278, 291, 372, 565, 609, 651
Mph1103I ATGCAT 2 cut(s) 751, 755
MseI TTAA 4 cut(s) 161, 290, 317, 569
MunI CAATTG 1 cut(s) 576
MwoI GCNNNNNNNGC 3 cut(s) 106, 235, 595
NcoI CCATGG 1 cut(s) 417
NdeII GATC 2 cut(s) 114, 409
NlaIII CATG 7 cut(s) 421, 473, 478, 692, 749, 753, 757
NlaIV GGNNCC 1 cut(s) 759
NmuCI GTSAC 1 cut(s) 188
NsiI ATGCAT 2 cut(s) 751, 755
NspI RCATGY 2 cut(s) 478, 753
PaeI GCATGC 1 cut(s) 753
PagI TCATGA 1 cut(s) 469
PciI ACATGT 1 cut(s) 474
PflFI GACNNNGTC 1 cut(s) 607
PkrI GCNGC 1 cut(s) 775
PscI ACATGT 1 cut(s) 474
PshBI ATTAAT 2 cut(s) 161, 290
PsiI TTATAA 1 cut(s) 767
PspN4I GGNNCC 1 cut(s) 759
PsuI RGATCY 1 cut(s) 114
PsyI GACNNNGTC 1 cut(s) 607
SaqAI TTAA 4 cut(s) 161, 290, 317, 569
SatI GCNGC 1 cut(s) 774
Sau3AI GATC 2 cut(s) 114, 409
SduI GDGCHC 1 cut(s) 715
SfaNI GCATC 3 cut(s) 52, 629, 640
SphI GCATGC 1 cut(s) 753
SspMI CTAG 1 cut(s) 461
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 3 cut(s) 50, 183, 385
TaiI ACGT 1 cut(s) 197
TaqII GACCGA 1 cut(s) 531
Tru1I TTAA 4 cut(s) 161, 290, 317, 569
Tru9I TTAA 4 cut(s) 161, 290, 317, 569
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 773
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 5 cut(s) 110, 239, 445, 716, 734
TspGWI ACGGA 2 cut(s) 93, 222
Tth111I GACNNNGTC 1 cut(s) 607
VspI ATTAAT 2 cut(s) 161, 290
XapI RAATTY 3 cut(s) 143, 272, 329
XceI RCATGY 2 cut(s) 478, 753
XspI CTAG 1 cut(s) 461
Zsp2I ATGCAT 2 cut(s) 751, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.