Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014820

Physical Location & Seq

Genomic Coordinates Reverse (-)

3470659 .. 3472110

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTTCAACTTGCTTGCTTATCTACTGAAATCGTTGGTTCAACACATTAGACCAGAGCTACAAGATAGATTTGACAAAACTCATCAGAGTTTAACAGCTTTCAAGATGTACTCAACCTCTATGAAGGAGGGATTCCGTTGCCGGCCGGAAGGTTTATTAAAGGATATTGGCGACAAAATTCCTTTGCGAATGATCAAGGAAATTTTCCGAATCGACGGTGAACGATTCCTTAGATTACCGGTGCCTCAAGTGATCAAAGGCGATAGGACTGCTTGGAGGACTGACGAAGAATTTGCCAGAGAAATGCTGGCTGGAGTCAACCCTGTAACCATTCGTCGCCTTCAAACGTTTCCACCAGCAAGCAAACTAGATCCAAATGTTTATGGTGATCACAGCAGTACCATAACAGAACACCACATCAAGAATAACTTGGATGGGCTAACGGTGCATCAGGCACTCAGGGACAACAAGTTATTCATATTAGACCATCATGATGCCTTCATGCCGTACCTGAGGCGGATAAAATCGACTGAAAACAAGATCTATGGCAGCAGGACACTCCTTTTCTTGAAAAGTGATGGGACTTTGAAGCCATTGGTGATTGAACTAAGCTTGCCTCATCCTGATGGAGATCAATTTGGTTGCACTAGCAAAGTATATACACCAGCTGAACTTGGTGTTGAGAGCTCCATATGGCAACTGGCTAAGGCTTATGCGGCTGTAAATGACTCTGAATTTCATCAACTGATCAGTCACTGGTATTATTACTCTACTCCTGCCAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0044424 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

262

Amino Acids

30.25

Weight (kDa)

8.71

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	4 - 254	9.3e-86	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014820)

Species	Orthologous Gene IDs
malus_domestica	MD05G1339500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0308151
rosa_laevigata	RLG00000025409
rosa_multiflora	Rmu_co8047918.1_g000001 Rmu_co8430331.1_g000001 Rmu_sc0001665.1_g000008 Rmu_sc0004189.1_g000039 Rmu_sc0005706.1_g000008 Rmu_sc0019919.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085130 Rroxscaffold_7G00160430 Rroxscaffold_7G00160510
rosa_samantha	Rh5CG072100 Rh5CG072700 Rh5DG010100 Rh5DG063800 Rh6AG473300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AciI	CCGC	2 cut(s)	517, 716
AclI	AACGTT	1 cut(s)	347
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	4 cut(s)	177, 201, 290, 734
AfaI	GTAC	3 cut(s)	110, 400, 509
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	7 cut(s)	7, 41, 103, 344, 571, 589, 605
AluBI	AGCT	5 cut(s)	58, 98, 612, 668, 687
AluI	AGCT	5 cut(s)	58, 98, 612, 668, 687
Alw21I	GWGCWC	1 cut(s)	689
AlwI	GGATC	1 cut(s)	365
AlwNI	CAGNNNCTG	1 cut(s)	756
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	549
ApoI	RAATTY	4 cut(s)	177, 201, 290, 734
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AsiGI	ACCGGT	1 cut(s)	238
AsuHPI	GGTGA	3 cut(s)	230, 398, 610
AxyI	CCTNAGG	1 cut(s)	512
BaeI	ACNNNNGTAYC	2 cut(s)	382, 415
BanI	GGYRCC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	689
BbvI	GCAGC	1 cut(s)	561
BccI	CCATC	4 cut(s)	428, 495, 572, 620
BceAI	ACGGC	1 cut(s)	490
BcgI	CGANNNNNNTGC	4 cut(s)	251, 275, 285, 309
BclI	TGATCA	4 cut(s)	192, 252, 388, 747
BfaI	CTAG	2 cut(s)	368, 648
BglII	AGATCT	1 cut(s)	540
BisI	GCNGC	2 cut(s)	550, 717
BlsI	GCNGC	2 cut(s)	551, 718
BmiI	GGNNCC	1 cut(s)	243
BmsI	GCATC	2 cut(s)	457, 484
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	630
BsaWI	WCCGGW	1 cut(s)	238
Bse118I	RCCGGY	2 cut(s)	141, 238
Bse1I	ACTGG	2 cut(s)	705, 761
Bse21I	CCTNAGG	1 cut(s)	512
Bse8I	GATNNNNATC	1 cut(s)	630
BseGI	GGATG	2 cut(s)	439, 619
BseJI	GATNNNNATC	1 cut(s)	630
BseMII	CTCAG	2 cut(s)	472, 503
BseNI	ACTGG	2 cut(s)	705, 761
BseX3I	CGGCCG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	561
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	1 cut(s)	241
BshTI	ACCGGT	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	689
BsiSI	CCGG	3 cut(s)	142, 146, 239
BslFI	GGGAC	2 cut(s)	476, 595
BsmFI	GGGAC	2 cut(s)	476, 595
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	689
Bsp143I	GATC	7 cut(s)	192, 252, 370, 388, 540, 631, 747
BspACI	CCGC	2 cut(s)	517, 716
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	2 cut(s)	471, 504
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	241
BsrFI	RCCGGY	2 cut(s)	141, 238
BsrI	ACTGG	2 cut(s)	705, 761
BssAI	RCCGGY	2 cut(s)	141, 238
BssMI	GATC	7 cut(s)	192, 252, 370, 388, 540, 631, 747
Bst4CI	ACNGT	2 cut(s)	218, 445
BstC8I	GCNNGC	5 cut(s)	15, 143, 309, 361, 614
BstDEI	CTNAG	5 cut(s)	230, 458, 512, 608, 705
BstF5I	GGATG	2 cut(s)	439, 619
BstKTI	GATC	7 cut(s)	195, 255, 373, 391, 543, 634, 750
BstMBI	GATC	7 cut(s)	192, 252, 370, 388, 540, 631, 747
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	445, 716
BstV1I	GCAGC	1 cut(s)	561
BstX2I	RGATCY	2 cut(s)	370, 540
BstYI	RGATCY	2 cut(s)	370, 540
BstZI	CGGCCG	1 cut(s)	143
Bsu36I	CCTNAGG	1 cut(s)	512
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	439, 619
BtsIMutI	CAGTG	1 cut(s)	754
Cac8I	GCNNGC	5 cut(s)	15, 143, 309, 361, 614
CaiI	CAGNNNCTG	1 cut(s)	756
CciI	TCATGA	1 cut(s)	490
Cfr10I	RCCGGY	2 cut(s)	141, 238
Csp6I	GTAC	3 cut(s)	109, 399, 508
CspAI	ACCGGT	1 cut(s)	238
CviAII	CATG	2 cut(s)	491, 502
CviQI	GTAC	3 cut(s)	109, 399, 508
DdeI	CTNAG	5 cut(s)	230, 458, 512, 608, 705
DpnI	GATC	7 cut(s)	194, 254, 372, 390, 542, 633, 749
DpnII	GATC	7 cut(s)	192, 252, 370, 388, 540, 631, 747
EaeI	YGGCCR	1 cut(s)	143
EagI	CGGCCG	1 cut(s)	143
EciI	GGCGGA	1 cut(s)	532
Ecl136II	GAGCTC	1 cut(s)	687
EclXI	CGGCCG	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	689
Eco52I	CGGCCG	1 cut(s)	143
Eco53kI	GAGCTC	1 cut(s)	687
Eco81I	CCTNAGG	1 cut(s)	512
EcoICRI	GAGCTC	1 cut(s)	687
EcoT38I	GRGCYC	1 cut(s)	689
FaeI	CATG	2 cut(s)	494, 505
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	2 cut(s)	476, 595
FatI	CATG	2 cut(s)	490, 501
FauNDI	CATATG	1 cut(s)	692
FbaI	TGATCA	4 cut(s)	192, 252, 388, 747
Fnu4HI	GCNGC	2 cut(s)	550, 717
FokI	GGATG	2 cut(s)	446, 606
FriOI	GRGCYC	1 cut(s)	689
Fsp4HI	GCNGC	2 cut(s)	550, 717
FspBI	CTAG	2 cut(s)	368, 648
GluI	GCNGC	2 cut(s)	550, 717
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	3 cut(s)	142, 146, 239
Hin1II	CATG	2 cut(s)	494, 505
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	610
HinfI	GANTC	5 cut(s)	132, 210, 225, 315, 728
HpaII	CCGG	3 cut(s)	142, 146, 239
HphI	GGTGA	3 cut(s)	230, 398, 610
Hpy166II	GTNNAC	2 cut(s)	221, 319
Hpy188I	TCNGA	3 cut(s)	87, 209, 733
Hpy188III	TCNNGA	5 cut(s)	103, 421, 491, 568, 623
Hpy8I	GTNNAC	2 cut(s)	221, 319
Hpy99I	CGWCG	2 cut(s)	218, 339
HpyAV	CCTTC	4 cut(s)	118, 143, 350, 508
HpyCH4III	ACNGT	2 cut(s)	218, 445
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	2 cut(s)	448, 645
HpyF10VI	GCNNNNNNNGC	2 cut(s)	445, 716
HpyF3I	CTNAG	5 cut(s)	230, 458, 512, 608, 705
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	2 cut(s)	494, 505
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Ksp22I	TGATCA	4 cut(s)	192, 252, 388, 747
Kzo9I	GATC	7 cut(s)	192, 252, 370, 388, 540, 631, 747
LmnI	GCTCC	1 cut(s)	692
Lsp1109I	GCAGC	1 cut(s)	561
LweI	GCATC	2 cut(s)	457, 484
MaeI	CTAG	2 cut(s)	368, 648
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	2 cut(s)	325, 752
MalI	GATC	7 cut(s)	194, 254, 372, 390, 542, 633, 749
MboI	GATC	7 cut(s)	192, 252, 370, 388, 540, 631, 747
MboII	GAAGA	1 cut(s)	299
MflI	RGATCY	2 cut(s)	370, 540
MhlI	GDGCHC	1 cut(s)	689
MluCI	AATT	5 cut(s)	177, 201, 290, 635, 734
MlyI	GAGTC	2 cut(s)	324, 722
MnlI	CCTC	6 cut(s)	121, 127, 255, 270, 507, 627
MroNI	GCCGGC	1 cut(s)	141
MseI	TTAA	2 cut(s)	92, 158
MslI	CAYNNNNRTG	2 cut(s)	492, 624
MspA1I	CMGCKG	1 cut(s)	668
MspI	CCGG	3 cut(s)	142, 146, 239
MwoI	GCNNNNNNNGC	2 cut(s)	445, 716
NaeI	GCCGGC	1 cut(s)	143
NdeI	CATATG	1 cut(s)	692
NdeII	GATC	7 cut(s)	192, 252, 370, 388, 540, 631, 747
NgoMIV	GCCGGC	1 cut(s)	141
NlaIII	CATG	2 cut(s)	494, 505
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	752
PagI	TCATGA	1 cut(s)	490
PdiI	GCCGGC	1 cut(s)	143
PfeI	GAWTC	3 cut(s)	132, 210, 225
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	551, 718
PleI	GAGTC	2 cut(s)	323, 722
PpsI	GAGTC	2 cut(s)	323, 722
Psp124BI	GAGCTC	1 cut(s)	689
Psp1406I	AACGTT	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	756
PsuI	RGATCY	2 cut(s)	370, 540
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	3 cut(s)	110, 400, 509
RsaNI	GTAC	3 cut(s)	109, 399, 508
RseI	CAYNNNNRTG	2 cut(s)	492, 624
SacI	GAGCTC	1 cut(s)	689
SaqAI	TTAA	2 cut(s)	92, 158
SatI	GCNGC	2 cut(s)	550, 717
Sau3AI	GATC	7 cut(s)	192, 252, 370, 388, 540, 631, 747
SchI	GAGTC	2 cut(s)	324, 722
SduI	GDGCHC	1 cut(s)	689
SetI	ASST	9 cut(s)	60, 100, 119, 154, 350, 513, 614, 670, 689
SfaNI	GCATC	2 cut(s)	457, 484
SmiMI	CAYNNNNRTG	2 cut(s)	492, 624
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	5 cut(s)	177, 201, 290, 635, 734
SsiI	CCGC	2 cut(s)	517, 716
SspMI	CTAG	2 cut(s)	368, 648
SstI	GAGCTC	1 cut(s)	689
TaaI	ACNGT	2 cut(s)	218, 445
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	2 cut(s)	213, 527
TasI	AATT	5 cut(s)	177, 201, 290, 635, 734
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	3 cut(s)	132, 210, 225
Tru1I	TTAA	2 cut(s)	92, 158
Tru9I	TTAA	2 cut(s)	92, 158
TscAI	CASTG	1 cut(s)	761
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	1 cut(s)	549
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	4 cut(s)	137, 466, 490, 728
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	761
XapI	RAATTY	4 cut(s)	177, 201, 290, 734
XcmI	CCANNNNNNNNNTGG	2 cut(s)	304, 697
XspI	CTAG	2 cut(s)	368, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.