Rmu_sc0005706.1_g000008

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005706.1
Physical Location & Seq
Forward (+)
28460 .. 30090
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005706.1_g000008.1.cds

Sequence Viewer

Length: 543 bp
atgccgtacctgaggcggaaaaactcgaccgaaaacaagatctatggcagcaggacagtactactccttttcttgaaaagtgatgggactttgaagccattggtgattgaactaagcttgcctcatcgtaatggagatcaatttggttgcactagcaaagtatgtacaccagctgaacatggtgttgagagctccatatggcaactggctaaggcttatgcggctgtaaatgactctggatttcatccaactgatcagtcactgagggccgagatggctgtcaaggatgccaattctccacacggtgttcgcctactgatagaggactacccatatgctgttgatggactgaatatttgggtcatggggacaaaaagaatgaaccctggtggcctcaaatgcatactcgtgatgggctcatcgaaacatgcactatcatcatttggatgcctctgcgctccatgcagccgtcaacttcggacaatactcttttgctggacaccttccaaaccgaccaactataagcaggagattcatgcctga

Protein Analysis

180

Amino Acids

19.93

Weight (kDa)

9.11

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 16, 221
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 3 cut(s) 8, 60, 166
AgsI TTSAA 3 cut(s) 76, 94, 110
AjnI CCWGG 1 cut(s) 385
AluBI AGCT 3 cut(s) 117, 173, 192
AluI AGCT 3 cut(s) 117, 173, 192
Alw21I GWGCWC 1 cut(s) 194
AlwNI CAGNNNCTG 1 cut(s) 262
AoxI GGCC 2 cut(s) 267, 391
ApeKI GCWGC 2 cut(s) 48, 465
ArsI GACNNNNNNTTYG 2 cut(s) 339, 371
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 115
AxyI CCTNAGG 1 cut(s) 11
BanII GRGCYC 2 cut(s) 194, 419
BauI CACGAG 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 60, 477
BccI CCATC 4 cut(s) 77, 268, 338, 406
BceAI ACGGC 1 cut(s) 453
BciT130I CCWGG 1 cut(s) 387
BclI TGATCA 1 cut(s) 253
BfaI CTAG 1 cut(s) 153
BglI GCCNNNNNGGC 1 cut(s) 275
BglII AGATCT 1 cut(s) 39
BisI GCNGC 3 cut(s) 49, 222, 466
BlsI GCNGC 3 cut(s) 50, 223, 467
BmcAI AGTACT 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 387
BmgT120I GGNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 387
BmsI GCATC 2 cut(s) 277, 437
Bpu10I CCTNAGC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 385
Bse1I ACTGG 1 cut(s) 210
Bse21I CCTNAGG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 3 cut(s) 244, 292, 452
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 210
BseXI GCAGC 2 cut(s) 60, 477
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 2 cut(s) 269, 393
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 194
BslFI GGGAC 2 cut(s) 100, 382
BsmFI GGGAC 2 cut(s) 100, 382
BsnI GGCC 2 cut(s) 269, 393
Bsp1286I GDGCHC 2 cut(s) 194, 419
Bsp1407I TGTACA 1 cut(s) 164
Bsp143I GATC 3 cut(s) 39, 136, 253
BspACI CCGC 2 cut(s) 16, 221
BspANI GGCC 2 cut(s) 269, 393
BspCNI CTCAG 1 cut(s) 255
BsrGI TGTACA 1 cut(s) 164
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 3 cut(s) 39, 136, 253
BssSI CACGAG 1 cut(s) 407
Bst2BI CACGAG 1 cut(s) 407
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 58, 305
BstAUI TGTACA 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 4 cut(s) 11, 113, 210, 263
BstF5I GGATG 3 cut(s) 244, 292, 452
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 3 cut(s) 42, 139, 256
BstMBI GATC 3 cut(s) 39, 136, 253
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 4 cut(s) 221, 275, 399, 462
BstNI CCWGG 1 cut(s) 387
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 385
BstV1I GCAGC 2 cut(s) 60, 477
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 11
BsuRI GGCC 2 cut(s) 269, 393
BtsCI GGATG 3 cut(s) 244, 292, 452
BtsIMutI CAGTG 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 119
CaiI CAGNNNCTG 1 cut(s) 262
CfoI GCGC 1 cut(s) 458
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 3 cut(s) 7, 59, 165
CviAII CATG 5 cut(s) 179, 364, 428, 462, 536
CviQI GTAC 3 cut(s) 7, 59, 165
DdeI CTNAG 4 cut(s) 11, 113, 210, 263
DpnI GATC 3 cut(s) 41, 138, 255
DpnII GATC 3 cut(s) 39, 136, 253
DraIII CACNNNGTG 1 cut(s) 305
EciI GGCGGA 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 192
Eco24I GRGCYC 2 cut(s) 194, 419
Eco53kI GAGCTC 1 cut(s) 192
Eco81I CCTNAGG 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 385
EcoT22I ATGCAT 1 cut(s) 404
EcoT38I GRGCYC 2 cut(s) 194, 419
FaeI CATG 5 cut(s) 182, 367, 431, 465, 539
FaqI GGGAC 2 cut(s) 100, 382
FatI CATG 5 cut(s) 178, 363, 427, 461, 535
FauNDI CATATG 2 cut(s) 197, 334
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 3 cut(s) 49, 222, 466
FokI GGATG 3 cut(s) 231, 299, 459
FriOI GRGCYC 2 cut(s) 194, 419
Fsp4HI GCNGC 3 cut(s) 49, 222, 466
FspBI CTAG 1 cut(s) 153
GlaI GCGC 1 cut(s) 457
GluI GCNGC 3 cut(s) 49, 222, 466
HaeIII GGCC 2 cut(s) 269, 393
HhaI GCGC 1 cut(s) 458
Hin1II CATG 5 cut(s) 182, 367, 431, 465, 539
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HincII GTYRAC 1 cut(s) 473
HindII GTYRAC 1 cut(s) 473
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 2 cut(s) 233, 532
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 167, 473
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 3 cut(s) 73, 237, 409
Hpy8I GTNNAC 2 cut(s) 167, 473
HpyAV CCTTC 1 cut(s) 513
HpyCH4III ACNGT 2 cut(s) 58, 305
HpyCH4V TGCA 4 cut(s) 150, 402, 431, 465
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 275, 399, 462
HpyF3I CTNAG 4 cut(s) 11, 113, 210, 263
Hsp92II CATG 5 cut(s) 182, 367, 431, 465, 539
HspAI GCGC 1 cut(s) 456
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 3 cut(s) 39, 136, 253
LmnI GCTCC 2 cut(s) 197, 463
LpnPI CCDG 9 cut(s) 23, 37, 183, 191, 222, 372, 399, 481, 512
Lsp1109I GCAGC 2 cut(s) 60, 477
LweI GCATC 2 cut(s) 277, 437
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 258
MalI GATC 3 cut(s) 41, 138, 255
MboI GATC 3 cut(s) 39, 136, 253
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 2 cut(s) 194, 419
MluCI AATT 2 cut(s) 140, 292
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 6 cut(s) 6, 132, 258, 316, 404, 461
Mph1103I ATGCAT 1 cut(s) 404
MslI CAYNNNNRTG 3 cut(s) 129, 407, 445
MspA1I CMGCKG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 4 cut(s) 221, 275, 399, 462
NdeI CATATG 2 cut(s) 197, 334
NdeII GATC 3 cut(s) 39, 136, 253
NlaIII CATG 5 cut(s) 182, 367, 431, 465, 539
NmeAIII GCCGAG 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 258
NsiI ATGCAT 1 cut(s) 404
NspI RCATGY 1 cut(s) 431
PfeI GAWTC 1 cut(s) 532
PkrI GCNGC 3 cut(s) 50, 223, 467
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp124BI GAGCTC 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspPI GGNCC 1 cut(s) 267
PstNI CAGNNNCTG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 3 cut(s) 8, 60, 166
RsaNI GTAC 3 cut(s) 7, 59, 165
RseI CAYNNNNRTG 3 cut(s) 129, 407, 445
SacI GAGCTC 1 cut(s) 194
SatI GCNGC 3 cut(s) 49, 222, 466
Sau3AI GATC 3 cut(s) 39, 136, 253
Sau96I GGNCC 1 cut(s) 267
ScaI AGTACT 1 cut(s) 60
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 387
SduI GDGCHC 2 cut(s) 194, 419
SetI ASST 5 cut(s) 12, 119, 175, 194, 505
SfaNI GCATC 2 cut(s) 277, 437
SmiMI CAYNNNNRTG 3 cut(s) 129, 407, 445
Sse9I AATT 2 cut(s) 140, 292
SsiI CCGC 2 cut(s) 16, 221
SspI AATATT 1 cut(s) 355
SspMI CTAG 1 cut(s) 153
SstI GAGCTC 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 385
TaaI ACNGT 2 cut(s) 58, 305
TaqI TCGA 2 cut(s) 26, 422
TaqII GACCGA 1 cut(s) 44
TasI AATT 2 cut(s) 140, 292
TatI WGTACW 2 cut(s) 58, 164
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 1 cut(s) 532
TscAI CASTG 1 cut(s) 267
TseFI GTSAC 1 cut(s) 258
TseI GCWGC 2 cut(s) 48, 465
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 3 cut(s) 233, 395, 524
TspRI CASTG 1 cut(s) 267
XceI RCATGY 1 cut(s) 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XspI CTAG 1 cut(s) 153
ZrmI AGTACT 1 cut(s) 60
Zsp2I ATGCAT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.