Rh5CG072700

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014820
Physical Location & Seq
Forward (+)
5425592 .. 5425918
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG072700.1

Sequence Viewer

Length: 327 bp
ATGGTTGTGGTAACTTTTCAGGCATTGGAAGAAAACAAGCTGTTCATACTAGACTATCATGACATTTTCCTTCCGTTTATCAACCAAATAAATGCTATGGATGACCGAAAAGCTTATGCAACACGTACAATTTTCTTCCTCACCTCATTGGGAACATTGAAGCCCATTGCTATTGAGCTCAGTCTCCATCAAACCAATTCAGATTCACCATCCAAGCAGGTTCTCACTCCTCCAGTTGATGCTACAACAAATTGGCTTTGGGAACTTGGCAAAGCCCATGTATGCTCCAATGATTCCTGCGTTCATCAACTCATTCATCACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

108

Amino Acids

12.37

Weight (kDa)

5.76

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipoxygenase PF00305 7 - 108 1.5e-44 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 208
AfaI GTAC 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 122
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 3 cut(s) 40, 113, 178
AluI AGCT 3 cut(s) 40, 113, 178
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 133, 198
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BccI CCATC 2 cut(s) 195, 217
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 208
BmsI GCATC 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 216
BsaAI YACGTR 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 233, 326
Bse3DI GCAATG 1 cut(s) 165
BseGI GGATG 2 cut(s) 106, 209
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 193
BseNI ACTGG 2 cut(s) 233, 326
BseRI GAGGAG 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 2 cut(s) 233, 326
BstBAI YACGTR 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 2 cut(s) 106, 209
BstMAI GTCTC 1 cut(s) 188
BtsCI GGATG 2 cut(s) 106, 209
BtsIMutI CAGTG 1 cut(s) 319
BveI ACCTGC 1 cut(s) 208
CciI TCATGA 1 cut(s) 58
Csp6I GTAC 1 cut(s) 126
CviAII CATG 2 cut(s) 59, 278
CviJI RGCY 6 cut(s) 40, 113, 163, 178, 256, 275
CviKI_1 RGCY 6 cut(s) 40, 113, 163, 178, 256, 275
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 2 cut(s) 62, 281
FaiI YATR 6 cut(s) 47, 60, 98, 117, 279, 283
FatI CATG 2 cut(s) 58, 277
FokI GGATG 2 cut(s) 113, 196
FriOI GRGCYC 1 cut(s) 180
FspBI CTAG 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 216
Hin1II CATG 2 cut(s) 62, 281
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 2 cut(s) 203, 293
HphI GGTGA 2 cut(s) 133, 198
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 2 cut(s) 62, 281
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 5 cut(s) 5, 203, 246, 307, 310
LweI GCATC 1 cut(s) 229
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 10
MboII GAAGA 2 cut(s) 41, 127
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 3 cut(s) 129, 196, 250
MnlI CCTC 3 cut(s) 149, 154, 240
NlaIII CATG 2 cut(s) 62, 281
PagI TCATGA 1 cut(s) 58
PfeI GAWTC 2 cut(s) 203, 293
Ppu21I YACGTR 1 cut(s) 125
Psp124BI GAGCTC 1 cut(s) 180
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SacI GAGCTC 1 cut(s) 180
SduI GDGCHC 1 cut(s) 180
SetI ASST 6 cut(s) 42, 115, 127, 146, 180, 222
SfaNI GCATC 1 cut(s) 229
Sse9I AATT 3 cut(s) 129, 196, 250
SspMI CTAG 1 cut(s) 50
SstI GAGCTC 1 cut(s) 180
TaiI ACGT 1 cut(s) 127
TaqII GACCGA 1 cut(s) 120
TasI AATT 3 cut(s) 129, 196, 250
TfiI GAWTC 2 cut(s) 203, 293
TscAI CASTG 1 cut(s) 326
TspDTI ATGAA 3 cut(s) 34, 293, 305
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 326
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.