Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8047918.1

Orthogroup ID

OG0014820

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 521

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8047918.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ttgaagcctttggcaattgagttaagccttccacatccacaaggggagcatcatggtgctgtcagcaaagttttcactccagcagaagatggcatcgaggcttcagtttggcagctggccaaagcttacgctgctgtaaatgattctggctatcatcaacttatcagccactggttaaacacccatgctgtaatagagccatttataattgcaacaaatagacagttgagtgtgcttcacccaatacataagcttctgcaaccacacttccgggacacgatgaacataaatgccctggccaggcaaatcctaatcaatgctggaggggtgcttgagaagacagtcttcccagctcaatatgccatggaaatgtctgccgttatttataaaaactgggtattcaccgagcaagcactacctgctgacttgctcaagaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016491 GO:0016701 GO:0016702 GO:0022622 GO:0030258 GO:0031347 GO:0031348 GO:0032501 GO:0032502 GO:0034440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0051213 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1900366 GO:1905392 GO:1905393 GO:1990136 GO:2000068

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

146

Amino Acids

16.3

Weight (kDa)

6.82

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014820)

Species	Orthologous Gene IDs
malus_domestica	MD05G1339500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0308151
rosa_laevigata	RLG00000025409
rosa_multiflora	Rmu_co8047918.1_g000001 Rmu_co8430331.1_g000001 Rmu_sc0001665.1_g000008 Rmu_sc0004189.1_g000039 Rmu_sc0005706.1_g000008 Rmu_sc0019919.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085130 Rroxscaffold_7G00160430 Rroxscaffold_7G00160510
rosa_samantha	Rh5CG072100 Rh5CG072700 Rh5DG010100 Rh5DG063800 Rh6AG473300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	206, 387
Acc36I	ACCTGC	1 cut(s)	427
AcoI	YGGCCR	2 cut(s)	117, 297
AcuI	CTGAAG	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	4
AjnI	CCWGG	2 cut(s)	294, 299
AluBI	AGCT	4 cut(s)	115, 125, 253, 353
AluI	AGCT	4 cut(s)	115, 125, 253, 353
AlwNI	CAGNNNCTG	1 cut(s)	171
AoxI	GGCC	2 cut(s)	117, 297
ApeKI	GCWGC	2 cut(s)	112, 131
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	230, 394
BalI	TGGCCA	2 cut(s)	119, 299
BbsI	GAAGAC	2 cut(s)	337, 344
BbvI	GCAGC	2 cut(s)	118, 124
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	296, 301
BcnI	CCSGG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	427
BisI	GCNGC	2 cut(s)	113, 132
BlsI	GCNGC	2 cut(s)	114, 133
Bme1390I	CCNGG	3 cut(s)	272, 296, 301
BmrFI	CCNGG	3 cut(s)	272, 296, 301
BmrI	ACTGGG	1 cut(s)	403
BmsI	GCATC	2 cut(s)	58, 102
BmuI	ACTGGG	1 cut(s)	403
BpiI	GAAGAC	2 cut(s)	337, 344
BpmI	CTGGAG	2 cut(s)	63, 342
BpuEI	CTTGAG	2 cut(s)	353, 416
BpuMI	CCSGG	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	294, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	2 cut(s)	176, 398
BseBI	CCWGG	2 cut(s)	296, 301
BseDI	CCNNGG	2 cut(s)	294, 363
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	176, 398
BseXI	GCAGC	2 cut(s)	118, 124
BseYI	CCCAGC	1 cut(s)	349
BshFI	GGCC	2 cut(s)	119, 299
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	119, 299
Bsp19I	CCATGG	1 cut(s)	363
BspANI	GGCC	2 cut(s)	119, 299
BspMI	ACCTGC	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	176, 398
BssECI	CCNNGG	2 cut(s)	294, 363
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	296, 301
Bst4CI	ACNGT	2 cut(s)	225, 343
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	117, 411
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 359, 419
BstNI	CCWGG	2 cut(s)	296, 301
BstSCI	CCNGG	3 cut(s)	270, 294, 299
BstV1I	GCAGC	2 cut(s)	118, 124
BstV2I	GAAGAC	2 cut(s)	337, 344
BsuRI	GGCC	2 cut(s)	119, 299
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	169
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	2 cut(s)	117, 411
CaiI	CAGNNNCTG	1 cut(s)	171
CviAII	CATG	3 cut(s)	53, 185, 364
EaeI	YGGCCR	2 cut(s)	117, 297
Eco130I	CCWWGG	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	87
EcoRII	CCWGG	2 cut(s)	294, 299
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	3 cut(s)	56, 188, 367
FaiI	YATR	8 cut(s)	54, 186, 206, 249, 287, 360, 365, 387
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	3 cut(s)	52, 184, 363
Fnu4HI	GCNGC	2 cut(s)	113, 132
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	2 cut(s)	113, 132
GluI	GCNGC	2 cut(s)	113, 132
GsaI	CCCAGC	1 cut(s)	353
GsuI	CTGGAG	2 cut(s)	63, 342
HaeIII	GGCC	2 cut(s)	119, 299
HapII	CCGG	1 cut(s)	271
Hin1II	CATG	3 cut(s)	56, 188, 367
HindIII	AAGCTT	2 cut(s)	123, 251
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	2 cut(s)	230, 394
Hpy188III	TCNNGA	1 cut(s)	433
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	225, 343
HpyCH4V	TGCA	2 cut(s)	212, 259
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 359, 419
Hsp92II	CATG	3 cut(s)	56, 188, 367
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	2 cut(s)	118, 124
LweI	GCATC	2 cut(s)	58, 102
MboII	GAAGA	3 cut(s)	98, 337, 349
MfeI	CAATTG	1 cut(s)	15
MlsI	TGGCCA	2 cut(s)	119, 299
MluCI	AATT	2 cut(s)	15, 207
MluNI	TGGCCA	2 cut(s)	119, 299
MnlI	CCTC	3 cut(s)	91, 317, 429
Mox20I	TGGCCA	2 cut(s)	119, 299
MscI	TGGCCA	2 cut(s)	119, 299
MseI	TTAA	2 cut(s)	23, 176
MslI	CAYNNNNRTG	2 cut(s)	54, 368
Msp20I	TGGCCA	2 cut(s)	119, 299
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	3 cut(s)	272, 296, 301
MunI	CAATTG	1 cut(s)	15
MvaI	CCWGG	2 cut(s)	296, 301
MwoI	GCNNNNNNNGC	3 cut(s)	131, 359, 419
NciI	CCSGG	1 cut(s)	272
NcoI	CCATGG	1 cut(s)	363
NlaIII	CATG	3 cut(s)	56, 188, 367
PfeI	GAWTC	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	2 cut(s)	114, 133
PsiI	TTATAA	2 cut(s)	206, 387
Psp6I	CCWGG	2 cut(s)	294, 299
PspFI	CCCAGC	1 cut(s)	349
PspGI	CCWGG	2 cut(s)	294, 299
PstNI	CAGNNNCTG	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	115
RseI	CAYNNNNRTG	2 cut(s)	54, 368
SaqAI	TTAA	2 cut(s)	23, 176
SatI	GCNGC	2 cut(s)	113, 132
ScrFI	CCNGG	3 cut(s)	272, 296, 301
SetI	ASST	6 cut(s)	117, 127, 255, 355, 421, 440
SfaNI	GCATC	2 cut(s)	58, 102
SmiMI	CAYNNNNRTG	2 cut(s)	54, 368
SmlI	CTYRAG	2 cut(s)	332, 431
SmoI	CTYRAG	2 cut(s)	332, 431
Sse9I	AATT	2 cut(s)	15, 207
StyD4I	CCNGG	3 cut(s)	270, 294, 299
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	225, 343
TaqI	TCGA	1 cut(s)	96
TasI	AATT	2 cut(s)	15, 207
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	23, 176
Tru9I	TTAA	2 cut(s)	23, 176
TscAI	CASTG	1 cut(s)	176
TseI	GCWGC	2 cut(s)	112, 131
TspDTI	ATGAA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.